LOC122352691


Basic Information

Item Value
gene id LOC122352691
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2169319 ~ 2170549 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU109961
TTTAAGACACAGTACCACAGATACCAAAGGAAATACAGACTGGGACAATAACTGAGCAGGAACATCTGTGCAAGGTTCTTTTGAAGCTTTTGATTTGCAGGATGAAGACTTTACATGCAATGCTACTGATGCTGTTCGTCGCATCAGTTTTTTCAATGCCAGGTTATCGGCGCAGAAGATCTGATTCATCAGAAGAATCGGAGGGTTCGGATGAAAATGATTCAATGGGAGCGTTCAGTGAGGAGTCAGAGTCAGTTGAGAATTCAGATGAGTCTAATGAATCTTCTGAGGAAATCATCAGAGTTGTTACAGCTCCTCCAACCATCACGACATGAGGCTCATAAGACATCACAAGCTGTGTCACTGGGGATCTGACAACTAAAATAATGGGCAAGAATAATAAAATCGTTAAAATATCTTGTATTTCTACTGTTTAATCatcttttaatgcaaaaaaaacacattaaatgagTAATGGTtcataataacatatatatatattacttttaaattgcattttcctATTATGATTTTAAGtgctcattcaaaataaaaaaaaaatccttcgtGCAACCAATTGTCATAA
>TU109962
ACACGTATGTTCTATGTTTTTCCAATGTATTTAAGTCGTAAGATGTTTAGGTAttagaattagggatgtagaatatagtcatgcatgttaataagcagctTGTTAGTAGTGAGAACTGGTCCTCATACCAAAGTGTTTCCAAACCCAgtcattttgttctgtttcCACTTTCCTTGTGTCAATAAAACAATACTGCCACATTTAGATCCGATCTCTCATCTTAAGTGCAAACAGACTGTGCCCAACATTACATTTTGGagccattaaataaaatattttctggtaaatattttctatttcgCAAGGTCTGGTAGAGACCCGGACGTTGCATGAATGTTTTCTCGTCACAGCATCGTCATGGAAATTGCACCAAGCCCTGGTTTACTCACATCCATCCAGTATTTAAGACACAGTACCACAGATACCAAAGGAAATACAGACTGGGACAATAACTGAGCAGGAACATCTGTGCAAGCTTTTGATTTGCAGGATGAAGACTTTACATGCAATGCTACTGATGCTGTTCGTCGCATCAGTTTTTTCAATGCCAGGTTATCGGCGCAGAAGATCTGATTCATCAGAAGAATCGGAGGGTTCGGATGAAAATGATTCAATGGGAGCGTTCAGTGAGGAGTCAGAGTCAGTTGAGAATTCAGATGAGTCTAATGAATCTTCTGAGGAAATCATCAGAGTTGTTACAGCTCCTCCAACCATCACGACATGAGGCTCATAAGACATCACAAGCTGTGTCACTGGGGATCTGACAACTAAAATAATGGGCAAGAATAATAAAATCGTTAAAATATCTTGTATTTCTACTGTTTAATCatcttttaatgcaaaaaaaacacattaaatgagTAATGGTtcataataacatatatatatattacttttaaattgcattttcctATTATGATTTTAAGtgctcattcaaaataaaaaaaaaatccttcgtGCAACCAATTGTCATAA
>TU109963
TTTAAGACACAGTACCACAGATACCAAAGGAAATACAGACTGGGACAATAACTGAGCAGGAACATCTGTGCAAGCTTTTGATTTGCAGGATGAAGACTTTACATGCAATGCTACTGATGCTGTTCGTCGCATCAGTTTTTTCAATGCCAGGTTATCGGCGCAGAAGATCTGATTCATCAGAAGAATCGGAGGGTTCGGATGAAAATGATTCAATGGGAGCGTTCAGTGAGGAGTCAGAGTCAGTTGAGAATTCAGATGAGTCTAATGAATCTTCTGAGGAAATCATCAGAGTTGTTACAGCTCCTCCAACCATCACGACATGAGGCTCATAAGACATCACAAGCTGTGTCACTGGGGATCTGACAACTAAAATAATGGGCAAGAATAATAAAATCGTTAAAATATCTTGTATTTCTACTGTTTAATCatcttttaatgcaaaaaaaacacattaaatgagTAATGGTtcataataacatatatatatattacttttaaattgcattttcctATTATGATTTTAAGtgctcattcaaaataaaaaaaaaatccttcgtGCAACCAATTGTCATAA
>XR_006251907.1
GACGTTGCATGAATGTTTTCTCGTCACAGCATCGTCATGGAAATTGCACCAAGCCCTGGTTTACTCACATCCATCCAGTATTTAAGACACAGTACCACAGATACCAAAGGAAATACAGACTGGGACAATAACTGAGCAGGAACATCTGTGCAAGGTTCTTTTGAAGCTTTTGATTTGCAGGATGAAGACTTTACATGCAATGCTACTGATGCTGTTCGTCGCATCAGTTTTTTCAATGCCAGGTTATCGGCGCAGAAGATCTGATTCATCAGAAGAATCGGAGGGTTCGGATGAAAATGATTCAATGGGAGCGTTCAGTGAGGAGTCAGAGTCAGTTGAGAATTCAGATGAGTCTAATGAATCTTCTGAGGAAATCATCAGAGTTGTTACAGCTCCTCCAACCATCACGACATGAGGCTCATAAGACATCACAAGCTGTGTCACTGGGGATCTGACAACTAAAATAATGGGCAAGAATAATAAAATCGTTAAAATATCTTGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU109961 False 586 lncRNA 0.36 3 2169319 2170148
TU109962 True 975 lncRNA 0.37 3 2169319 2170549
TU109963 False 574 lncRNA 0.36 3 2169319 2170148
XR_006251907.1 False 503 lncRNA 0.42 3 2169482 2170228

Neighbor

gene id symbol gene type direction distance location
sh3bp2 sh3bp2,LOC107667261,LOC107705055,LOC107558670,LOC107743173,LOC106568140 coding downstream 44587 2107110 ~ 2124732 (-)
vldlr vldlr,LOC107705052,LOC107548665,LOC107558669,LOC107667264 coding downstream 64030 2086121 ~ 2105289 (-)
kcnv2a kcnv2a,kcnv2,LOC107726563,LOC107667263,LOC107558705,LOC107743156,LOC108428855 coding downstream 85129 2081915 ~ 2084190 (-)
trappc13 trappc13,LOC107667267,LOC107742971,LOC107705057,LOC107726564 coding downstream 96404 2063385 ~ 2072915 (-)
nln nln,LOC107667266,LOC107548669,LOC107705053,LOC107558702,LOC107743138 coding downstream 113262 2044162 ~ 2056057 (-)
parm1 NA coding upstream 11246 2181795 ~ 2186043 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding upstream 28434 2198983 ~ 2228990 (-)
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding upstream 181114 2351663 ~ 2360133 (-)
sigmar1 sigmar1,LOC107653128,LOC107573076 coding upstream 190219 2360768 ~ 2363564 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding upstream 611602 2782151 ~ 2787777 (-)
LOC122352693 NA non-coding downstream 1972 2166391 ~ 2167347 (-)
LOC122352694 NA non-coding downstream 6615 2162144 ~ 2162704 (-)
LOC122353011 NA non-coding downstream 292567 1869993 ~ 1876752 (-)
G74149 NA non-coding downstream 300373 1867972 ~ 1868946 (-)
G74109 NA non-coding downstream 463642 1705098 ~ 1705677 (-)
G74317 NA non-coding upstream 458 2171007 ~ 2174363 (-)
G74319 NA non-coding upstream 8657 2179206 ~ 2179433 (-)
G74320 LOC107743020,LOC107663454,LOC107738849,LOC107548654,LOC107558708,LOC107667276 non-coding upstream 17119 2187668 ~ 2190158 (-)
G74306 LOC107738848,LOC107743003,LOC107558707,LOC107663452,LOC107548653 non-coding upstream 20541 2191090 ~ 2193301 (-)
G74324 NA non-coding upstream 77599 2248148 ~ 2250881 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 322417 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 681311 1483399 ~ 1488008 (-)
G74031 NA other downstream 695441 1466751 ~ 1473878 (-)
G74058 NA other downstream 720433 1445323 ~ 1448886 (-)
si:dkeyp-41f9.4 NA other downstream 1281307 885156 ~ 888012 (-)
LOC122352692 NA other upstream 23536 2194085 ~ 2197429 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other upstream 546548 2717097 ~ 2767195 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 1166790 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 1431063 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1735065 3905614 ~ 3912742 (-)

Expression


Co-expression Network