cntfr (cntfr,LOC107554853,LOC107738850,LOC107756542,LOC107554231)


Basic Information

Item Value
gene id cntfr
gene name cntfr,LOC107554853,LOC107738850,LOC107756542,LOC107554231
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2589096 ~ 2705724 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110053
CTTTGCCtgagacgcacacacatacacacacactacacgcCTTTGCCTACAGAACAGCAACTTTCTGTACTGGAGCTTCTCTGATCTACCCAAACACACATGCGCGCGCACTTTCACATCTGTGTGCAGCTACAGAGGACAAGACACAGGCATTAAGGAGCGGAGGAAGATAAGGCAAGAGACGGAAGCAAACGCTTTTAAatgGCCAACATTGTGACGTCCTTCTGCTGTGTGGTGCTTGCAGCCGTGGTGGTGGTTTATGCCCAAAGGCGCAGCCAGCAAGGTGCCAGGATTCAGTATGAAAGAATAGGAAGTGATGTCACTATGCAGTGCGGTTCGCTGGACAACGACGCCTCTGTAACATGGAAGGTGAACGGTACCGACGTGAAGGCCCGTAGGCGGGAAGAAGGGCCGCGGCTCATCCTGATGGAAGTAAACATGAGTAGCAACGGCCTCTACAGCTGCTTCCAGAACCCCGACGGCCAGCGCCGCGACCAGATCAATCTCCGCGTTGGACTTCCTCCGAAGGAACCGCAGGTGGCGTGTCGATCAAACACCTATCCCAAAGGCTTCTACTGCAGTTGGCACCTTCAGCATCCCACCTACATCCCTACGGACTTCGAAGTCGATGTCCAacacAACCAAAGGCCCCTGGAGGTGACGAGGGATGAAGTTCATAAAAACAGATGCCATGTGAAGTTTCCGGAGCTTTTCTCCAGCTTTCCTTACCGGGTCAACGTCACGGCGGTGAACTCGCTGGGTCGAGCGTCCAACGCCATCAGCTTCGAGGAGTCTTCGATAGTGAAACCCGACCCCCCTGAGAAGGTGGTGGCCAAACCCGTAGCCAACAATGCACGAAGACTAGAGGTGACCTGGAACAGTCCCAGCACGTGGCCCGATGTGGAGACCTTCCCGCTGAAGTACTTCCTGCGCTACCGGCCGCTCATCCGAGACCAGTGGCAG
>XM_043249794.1
TGCGAGTTTAAAAGTGCTTTGGTTTCCCTTCAGCCAGTGCAGTGTGAGCCTTTGCCtgagacgcacacacatacacacacactacacgcCTTTGCCTACAGAACAGCAACTTTCTGTACTGGAGCTTCTCTGATCTACCCAAACACACATGCGCGCGCACTTTCACATCTGTGTGCAGCTACAGAGGACAAGACACAGGCATTAAGGAGCGGAGGAAGATAAGGCAAGAGACGGAAGCAAACGCTTTTAAatgGCCAACATTGTGACGTCCTTCTGCTGTGTGGTGCTTGCAGCCGTGGTGGTGGTTTATGCCCAAAGGCGCAGCCAGCAAGGTGCCAGGATTCAGTATGAAAGAATAGGAAGTGATGTCACTATGCAGTGCGGTTCGCTGGACAACGACGCCTCTGTAACATGGAAGGTGAACGGTACCGACGTGAAGGCCCGTAGGCGGGAAGAAGGGCCGCGGCTCATCCTGATGGAAGTAAACATGAGTAGCAACGGCCTCTACAGCTGCTTCCAGAACCCCGACGGCCAGCGCCGCGACCAGATCAATCTCCGCGTTGGACTTCCTCCGAAGGAACCGCAGGTGGCGTGTCGATCAAACACCTATCCCAAAGGCTTCTACTGCAGTTGGCACCTTCAGCATCCCACCTACATCCCTACGGACTTCGAAGTCGATGTCCAacacAACCAAAGGCCCCTGGAGGTGACGAGGGATGAAGTTCATAAAAACAGATGCCATGTGAAGTTTCCGGAGCTTTTCTCCAGCTTTCCTTACCGGGTCAACGTCACGGCGGTGAACTCGCTGGGTCGAGCGTCCAACGCCATCAGCTTCGAGGAGTCTTCGATAGTGAAACCCGACCCCCCTGAGAAGGTGGTGGCCAAACCCGTAGCCAACAATGCACGAAGACTAGAGGTGACCTGGAACAGTCCCAGCACGTGGCCCGATGTGGAGACCTTCCCGCTGAAGTACTTCCTGCGCTACCGGCCGCTCATCCGAGACCAGTGGCAGCACAATACAGGGGTCAAAGTGGGTTGCTGTGATTTGGTTCCATTGTCAGCTCTCCACATGACTCCAATTGTGTCCCTCAGCTCTACAGAATGA

Function

symbol description
cntfr Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within positive regulation of axon regeneration. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including central nervous system; cranial ganglion; hindbrain neural plate; immature eye; and pectoral fin musculature. Orthologous to human CNTFR (ciliary neurotrophic factor receptor).

NR:

description
PREDICTED: ciliary neurotrophic factor receptor subunit alpha isoform X1

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110053 False 963 TUCP 0.55 6 2589145 2705339
XM_043249794.1 True 1105 mRNA 0.54 7 2589096 2705724

Neighbor

gene id symbol gene type direction distance location
galt galt,LOC107653127,LOC107667272,LOC107573074,LOC105911052,LOC107756536 coding upstream 135486 2363849 ~ 2453610 (+)
hdhd2 hdhd2,LOC107738843,LOC107743237 coding upstream 237430 2347998 ~ 2351666 (+)
ier3ip1 ier3ip1,LOC107738842,LOC107743093,LOC107653125,LOC106633120 coding upstream 241247 2346020 ~ 2347849 (+)
skor2 LOC107738854,LOC107558682,LOC107743073,LOC107653123 coding upstream 243569 2333644 ~ 2345527 (+)
cldn23.1 LOC107738848,LOC107743003,LOC107558707,LOC107663452,LOC107548653 coding upstream 395804 2191117 ~ 2193292 (+)
LOC122352383 musk,LOC107653500,LOC107756538,LOC107702603,LOC107723318 coding downstream 104848 2810572 ~ 2825957 (+)
LOC122353026 NA coding downstream 380487 3086211 ~ 3088976 (+)
LOC122352595 grin3a,LOC107710005,LOC107750958,LOC107653477,LOC107702562 coding downstream 439149 3144873 ~ 3161270 (+)
LOC122352986 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 coding downstream 566166 3271890 ~ 3308350 (+)
LOC122352557 plppr1,LOC107750956,LOC107653496,LOC107702599,LOC107710008,LOC102776600 coding downstream 708201 3413925 ~ 3455787 (+)
LOC122352387 NA non-coding upstream 13014 2520383 ~ 2576082 (+)
G74373 NA non-coding upstream 125686 2462995 ~ 2463410 (+)
G74372 NA non-coding upstream 126429 2462453 ~ 2462667 (+)
LOC122352630 NA non-coding upstream 226182 2353848 ~ 2362914 (+)
G74336 ier3ip1,LOC107738842,LOC107743093,LOC107653125,LOC106633120 non-coding upstream 239901 2346049 ~ 2349195 (+)
G74387 NA non-coding downstream 9332 2715056 ~ 2715351 (+)
G74388 NA non-coding downstream 9655 2715379 ~ 2716292 (+)
G74389 NA non-coding downstream 10798 2716522 ~ 2716757 (+)
G74392 NA non-coding downstream 74918 2780642 ~ 2781317 (+)
LOC122353153 NA non-coding downstream 881639 3587363 ~ 3587894 (+)
smad2 smad2,LOC107743055,LOC107653131 other upstream 338199 2231422 ~ 2250897 (+)
G74171 NA other upstream 388629 2194097 ~ 2200467 (+)
G74226 sh3bp2,LOC107743173,LOC107705055 other upstream 477402 2111196 ~ 2111694 (+)
LOC122352734 LOC107744074,LOC107597614,LOC107686419,LOC107685127,LOC101884949,LOC107713324,LOC107595548 other upstream 1505057 1077696 ~ 1084039 (+)
rbm18 rbm18,LOC107597621,LOC107595545,LOC107685132,LOC107686423 other upstream 1643236 934069 ~ 945860 (+)
il11ra LOC107756541,LOC107554229,LOC107750187,LOC107653503 other downstream 72135 2777859 ~ 2780475 (+)
LOC122352855 LOC107702575,LOC107715854,LOC107732942,LOC107569381,LOC107653476,LOC100002406 other downstream 863554 3569278 ~ 3574352 (+)
enoph1 enoph1,LOC107702573,LOC107715850,LOC107679042,LOC107731803 other downstream 882520 3588244 ~ 3617516 (+)
lyrm7 lyrm7,LOC107732862,LOC107715852 other downstream 882694 3588418 ~ 3590111 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other downstream 890882 3596606 ~ 3604216 (+)

Expression


Co-expression Network