si:ch73-234b20.5 (si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734)


Basic Information

Item Value
gene id si:ch73-234b20.5
gene name si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3596606 ~ 3604216 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110212
GAAGCTCTGTTTGCAAATGAGTTCTCTAATGTTTCATCCTGTTCGTTGTTCGCACTTGCGTTGTGGCTCACAGGAATGAGCTTCCCTAAAAAATCCTGTCCTTGAGGCAGTGGTCGCAGTCtgactttaacaaaaaaaaaaaacgtctggCAGCTACAGTTGGGCGTTTGAGGAGGTTTCAGTGAAGTTTCAGAATGGCTGACTACAACACCGAACCACAAGCGCCCAGCAAACTCAATCAAGTTCAGGATCAAGTCAATGATGTTAAAGTCATTCTCAAAGACAACATCAACAAAGTCCTAGAGAGAGGAGAGCGGTTAGACGACCTGATCGGCAAGACAGATGATCTGCAGGCCACGGCTGACTCGTTTCAAAGGACATCCACACGTGTTGCCAGAAAGATGTGGTGGAGAAATACCAAGATGATGATTATAATTGGTGTGGTAGTGCTCGCCATCATCATTTTAATCATCCTGTTAGCAACAAACGTCATTCCCACCTAATACAACCCAGACATCCATTTCAGTcatttgtatacacacacacacacacacacacacacaaagaattACTTTTTTACTCTAAAAGAAACTGGATTCATTTATGTATAGGTAAATTActatttttgacatttcatgTAAAATTCTATATAAATCCGGGGGTGAATATGTATGGGGTGTACgcatatgaattatgaatttttaCTTGTCAGAGTTTACTTGTTATCTTTATATAATGGGACTGAAAACAAGGGAAAGATGCTTTTATTGTTAGTAGCCTTCCTTTGAAAGgatatcattcattcattccaaaAACCATTTCAGCTACAATTACATTTCATGACAAACCTGCATACCTCCAATGAACCTTCATCACGTTATGACAGTGACTGATTCCTGAAACATTTCTCATGTTTTACCTAATGTGCTCAGGAAACTGATTTTATACACTGAGCGTCTTCTGGGCTGGGTTGAATTTCGAGTATGTTTcattgtatatttacatttcaattcaAACCCTTCAGTAAGTAATCTGTCTTTGTCAAGAGGACGTATGGCCTGTACAGATAATACGTTCTATATAGGAAATACTGATTAGCATGTACttattgtgtaaaaataagtacataaaatgaatttaaaggaacagttcacccaaaagtgaattACTTTCCTAATGGAAATGACGGAAGAGAACTCCAGTGTCAGTAAATGAAAGATAATCCAGACTATCTCACTCCAAAATGAGCACCATTTCCTTATTACTCATGACGAAATTATGTATTTACTTCAATATCACAATtacaaatattgtatttaacaCTTGATTTTTAagcagaaagactgaaatagaattttactgtaaaaggtAATCCAatgtttaaattacaaaatatattggtAACACCGGTAGTCTTTATGaataatacaatacatattttcataaaCAATCACGTTACACTTTTTGAAGGTGCGACTATAAATAGGTATCACTATGGTTATTACAATTGCTCGCGAGATcatacaatgcattataaattgtGTTTGAAAAGCAGTTTATTTCCCTTACAATGCAAAGCTTTATTAGTGATTATATTCGTTTTGTTATTCTAACGGCGGGCGTATTTTATAGCTGGTGTAATCTTGACAACGGCAGCAATATTTGACATCAAGCAGAGTAAAAGACGACGAAAGTCttcgtttttgggtgagctatgaCTTTAATCTCTGCAGAAACAACAGGCGGAAAGATtcatacactttattttgtactttccAATGGTTTACATGACTCTGTAGCAAAATACTGCaatatgaaatgaatattaaacgACCTACGCCATGTACGCACTTGTAAGCAATAAATTAATAGGCCTGTATAcaaataatttctaaatgatTTGGGCTCTCTATAGTTCACCGTACtcgacacagaaacgcctaagAGCAAACATAGCAGGGAATACGATTAGAAACGTACACAAGCTACaacaaattaaacacaaaaacaaatattctggACGTCATAGTTTTGGAAATAACACTTGAAATATTCTTTATTGTGTGTCCTTCAAAGCAACCTCAGATTTGAAACGAACTTGTGAAATAAATGGCGACCAAAGTGTAGCAACGTGTGGATCAACTCCATATTTAATAAGTCTGGCCCTCTTGTTTTCTCCTCTCAGGGTTGACTTTCGATTTGCTCGtccatctgaaaaacaaaaaagaaaatagcaaTTACGCTTGGGAAGTACGCAAACTCATAAAATGTACAGGAATCCcaattctttaataaattcgATAAGGAGACAAGACAGGACTTCGAAATTGAATGATAGCAAATACAAtagtgttaaattaaaaacttgtGGAATCATAACATTTAAGGCGCGACCTTGAATCGAtgaaaattaaaagacaaaaaggaaaGCATTACAAGCATAACAGTGTGACCTTTCCAAGATttcaaaaggttaaaaaaagagaatctGTTAGATGAAATTAACACGGTTTACAGGTGAAGCTTTTTCCACCGCTGTCAGTagaatacaaatacaatacaatacaaatattaaaaaaaaaagcacttctcCGGCGCAGCGGCATCCGAGTACAAACCGGCTTTTAGCTCATGGACTACAGGATATTACAGCTACACGAGctacaaataaagaaaagcaaGCATTACAGGTAAGATTAGATTAGAAGTGCATATTAAAACACTGGAAAGTCCAGAGAAAGCCGTATCCTTCAAAAAGTCAACAGTTAATTTTAATTCCGGCTCTCGTGTCATATTTTACCATTACTTGATGGTGCCTGGAAAAAATGGCATTacattatgatatattattacatacgaCCAATCCCAAGAAGTTTTAGgaggaacattttaatacaaaaaaataaataaaaatagagtaagaatacacacaaaacaaaaacagaagatAAAAGCTTGACGTgtccttttttatgtttttgttgctgtagttgttttgtttttacaattcgTATACAGGATGTTGGAAGACCATACCAAATGGGAGCATTCGAGAGCGTACGCCTCTCGTACCCTGTCCGCATTGAGCGGGCCTGAGACAATCGGGAAGTCAGCTCATGGCCTGCAAGGAAGTCCCCGCTGGCAGGTACAAACAAGGTATATGTCAGAGTTAGGAGACAACATTCTTCGGTTTTCTTTCCTTGTAATTCCATATTTTCTGGTATTTTCCCATTTTAGCAGTACTGTACCTGTtaatttttacagttaaaaacaaacaaaaaaaaaatggcaagacACAGCCAAAAGCCAGCTGTTACATTACTGCCAACATAGTCTCTATGTTACCACTACTGTAAAGCACTTCAGGGTGCTGTGAAactttagagaaaaacaaaaattaagcaacgtccattacaaaaaaaaaagtttacaaatGGTGATTTAGAGACTAAAGATGCATCGTCCGCGAGCAACGCAACAACGTACCTGCACAATTTCTCGTTAATACGGCTTGTAACTGTTTTGATGGCCGCCTCGCCTCGGGGATTTGCCGTAGCCGCTCTGCTGATCTAGAGTTAGgagcacaaaacacaaacaacgcAGATGTCTACGGTTAAACGTGTTGGCACACGGGCGCTCGAGAAAGGcggaaaacagaaaacaacctCTTAGCAATTTGGGTTTTAGAGCCAATCTCATGACACTTGCGGGATACTTACGTTAATTGTATTCAAACATTCTTTCAAAATACTGTATTCTGAAAATGTGGTGAGAGACACAGATCTGTGGCGtaaatgaatgtttgaaaactgtttattattttctaaaaacgACCACCGTCCGGCGGTCATTTCTTGCATGGCCTACAGATTTACACGTCCAATGAATTCAAAGGCACTTTGACAGATGTGTTTTGAAGCTAAGACATCCCTTTCTATATTTAGCACCatagttattataatacatatgtACAGTATAGCTTTGTGCAAGCAAGCCTTCCCTGTAGGACAAAAAGCAACTGCAGCAATGTTCTAGAGTTTTCTCTCGAAGCGTAAGGCATGTATGATACAAGCATGTGCATTCTGCTCAGATAATTTAGTGCACAACTGTCATAGTCCGGGTCGAGTACCGACAATCCACGATACAATATTTCCTTAGTTTTTTCATCTGTGCGTTCACAAACAGTATTACATACTGCTGTAGTCACCATATCCGTAGTAGTTGTTGTAACCCGAGTAATCATAGCCCCCGTATCCACCATAGCCTTGATTGTTGTAGCCATAGTTCCCGTAATTTCCATAACCTTGATTCCAGTAATTTCCGTATCCCTGGTTCCAATTTTGATTGGGACC
>XM_043250483.1
GGAGGGGAAGCTCTGTTTGCAAATGAGTTCTCTAATGTTTCATCCTGTTCGTTGTTCGCACTTGCGTTGTGGCTCACAGGAATGAGCTTCCCTAAAAAATCCTGTCCTTGAGGCAGTGGTCGCAGTCtgactttaacaaaaaaaaaaaacgtctggCAGCTACAGTTGGGCGTTTGAGGAGGTTTCAGTGAAGTTTCAGAATGGCTGACTACAACACCGAACCACAAGCGCCCAGCAAACTCAATCAAGTTCAGGATCAAGTCAATGATGTTAAAGTCATTCTCAAAGACAACATCAACAAAGTCCTAGAGAGAGGAGAGCGGTTAGACGACCTGATCGGCAAGACAGATGATCTGCAGGCCACGGCTGACTCGTTTCAAAGGACATCCACACGTGTTGCCAGAAAGATGTGGTGGAGAAATACCAAGATGATGATTATAATTGGTGTGGTAGTGCTCGCCATCATCATTTTAATCATCCTGTTAGCAACAAACGTCATTCCCACCTAATACAACCCAGACATCCATTTCAGTcatttgtatacacacacacacacacacacacacacaaagaattACTTTTTTACTCTAAAAGAAACTGGATTCATTTATGTATAGGTAAATTActatttttgacatttcatgTAAAATTCTATATAAATCCGGGGGTGAATATGTATGGGGTGTACgcatatgaattatgaatttttaCTTGTCAGAGTTTACTTGTTATCTTTATATAATGGGACTGAAAACAAGGGAAAGATGCTTTTATTGTTAGTAGCCTTCCTTTGAAAGgatatcattcattcattccaaaAACCATTTCAGCTACAATTACATTTCATGACAAACCTGCATACCTCCAATGAACCTTCATCACGTTATGACAGTGACTGATTCCTGAAACATTTCTCATGTTTTACCTAATGTGCTCAGGAAACTGATTTTATACACTGAGCGTCTTCTGGGCTGGGTTGAATTTCGAGTATGTTTcattgtatatttacatttcaattcaAACCCTTCAGTAAGTAATCTGTCTTTGTCAAGAGGACGTATGGCCTGTACAGATAATACGTTCTATATAGGAAATACTGATTAGCATGTACttattgtgtaaaaataagtacataaaatgaatttaaaggaacagttcacccaaaagtgaattACTTTCCTAATGGAAATGACGGAAGAGAACTCCAGTGTCAGTAAATGAAAGATAATCCAGACTATCTCACTCCAAAATGAGCACCATTTCCTTATTACTCATGACGAAATTATGTATTTACTTCAATATCACAATtacaaatattgtatttaacaCTTGATTTTTAagcagaaagactgaaatagaattttactgtaaaaggtAATCCAatgtttaaattacaaaatatattggtAACACCGGTAGTCTTTATGaataatacaatacatattttcataaaCAATCACGTTACACTTTTTGAAGGTGCGACTATAAATAGGTATCACTATGGTTATTACAATTGCTCGCGAGATcatacaatgcattataaattgtGTTTGAAAAGCAGTTTATTTCCCTTACAATGCAAAGCTTTATTAGTGATTATATTCGTTTTGTTATTCTAACGGCGGGCGTATTTTATAGCTGGTGTAATCTTGACAACGGCAGCAATATTTGACATCAAGCAGAGTAAAAGACGACGAAAGTCttcgtttttgggtgagctatgaCTTTAATCTCTGCAGAAACAACAGGCGGAAAGATtcatacactttattttgtactttccAATGGTTTACATGACTCTGTAGCAAAATACTGCaatatgaaatgaatattaaacgACCTACGCCATGTACGCACTTGTAAGCAATAAATTAATAGGCCTGTATAcaaataa

Function

symbol description
si:ch73-234b20.5 Predicted to enable SNAP receptor activity and syntaxin binding activity. Predicted to be involved in SNARE complex assembly and mucus secretion. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in mucin granule and plasma membrane. Is expressed in Kupffer's vesicle.

NR:

description
PREDICTED: vesicle-associated membrane protein 8-like isoform X1

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110212 True 4352 lncRNA 0.37 3 3596612 3604216
XM_043250483.1 False 1894 mRNA 0.36 3 3596606 3601752

Neighbor

gene id symbol gene type direction distance location
LOC122352579 LOC107702598,LOC107715893,LOC107653494,LOC107732273 coding upstream 28109 3496746 ~ 3568497 (+)
LOC122352557 plppr1,LOC107750956,LOC107653496,LOC107702599,LOC107710008,LOC102776600 coding upstream 140819 3413925 ~ 3455787 (+)
LOC122352986 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 coding upstream 288256 3271890 ~ 3308350 (+)
LOC122352595 grin3a,LOC107710005,LOC107750958,LOC107653477,LOC107702562 coding upstream 435336 3144873 ~ 3161270 (+)
LOC122353026 NA coding upstream 507630 3086211 ~ 3088976 (+)
carm1l LOC107702592,LOC107715849,LOC107679043,LOC107573847 coding downstream 22951 3627167 ~ 3640861 (+)
sptlc1 sptlc1,LOC107715883,LOC107720388,LOC107702586,LOC107683465,LOC107560407 coding downstream 93325 3697541 ~ 3708314 (+)
ror2 ror2,LOC107702585,LOC107683466 coding downstream 105450 3709666 ~ 3767673 (+)
nfil3 LOC107702584,LOC107558263,LOC107715881,LOC107720386,LOC107560408 coding downstream 164538 3768754 ~ 3772710 (+)
auh auh,LOC107720385 coding downstream 169294 3773510 ~ 3790180 (+)
LOC122353153 NA non-coding upstream 8712 3587363 ~ 3587894 (+)
G74392 NA non-coding upstream 815289 2780642 ~ 2781317 (+)
G74389 NA non-coding upstream 879849 2716522 ~ 2716757 (+)
G74388 NA non-coding upstream 880314 2715379 ~ 2716292 (+)
G74387 NA non-coding upstream 881255 2715056 ~ 2715351 (+)
G74585 NA non-coding downstream 163985 3768201 ~ 3768652 (+)
G74589 NA non-coding downstream 184541 3788757 ~ 3844512 (+)
G74596 LOC107715844 non-coding downstream 250100 3854316 ~ 3858952 (+)
G74626 NA non-coding downstream 287675 3891891 ~ 3893020 (+)
G74667 NA non-coding downstream 516648 4120864 ~ 4122658 (+)
lyrm7 lyrm7,LOC107732862,LOC107715852 other upstream 6495 3588418 ~ 3590111 (+)
LOC122352855 LOC107702575,LOC107715854,LOC107732942,LOC107569381,LOC107653476,LOC100002406 other upstream 22254 3569278 ~ 3574352 (+)
il11ra LOC107756541,LOC107554229,LOC107750187,LOC107653503 other upstream 816131 2777859 ~ 2780475 (+)
cntfr cntfr,LOC107554853,LOC107738850,LOC107756542,LOC107554231 other upstream 890882 2589096 ~ 2705724 (+)
smad2 smad2,LOC107743055,LOC107653131 other upstream 1345709 2231422 ~ 2250897 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other downstream 59696 3663912 ~ 3668006 (+)
cdc42se2 cdc42se2 other downstream 64787 3669003 ~ 3694596 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other downstream 408818 4013034 ~ 4120447 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 877051 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 1512650 5116866 ~ 5123373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G419350 NA non-coding CI01000304 null 2250825 ~ 2251046 (-)
rainbow trout (Oncorhynchus mykiss) LOC100305243 LOC106562364 misc NC_048576.1 CM023230.2 16634735 ~ 16638951 (-)