zgc:113274 (LOC107715885,LOC107702590,LOC107720383,LOC107560406)


Basic Information

Item Value
gene id zgc:113274
gene name LOC107715885,LOC107702590,LOC107720383,LOC107560406
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3663912 ~ 3668006 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110245
CGGAAGCTCTCTGTGTTAGTACAAATCCTGGACCAGAAACTGCCAAACTGCATCACTTTATTGACTGGGGATGAGTAGAGACTAGAATGTATGGGTTGAGCGGGGGAAGATGAGCCGGTGGTAAGGTGAGACACCTGTGCATCCGAACTTCTGATTTGTCATGTGACCAAACAATCTGGAAGAGCACGAGCATATCCACCTGTCTGTAAATGCAAGAGAAAGGTGGAAAGCGATCATGCCGCGGAACTACATTCGTAAAACGGACTGGGGTTCAGTAACCTACGAGGAGCTGGAGAAAGCGTCCGTTGAAGTGAAGCGCGGGAAATCTATCAGAACAGTggcgaaagaaagaaagatcgGCAGGTCCACCTTGCAGCGCTACATGaagaaagcagaagaaaaaagagagaaaaccgTCGGCTACAGAGGAACGGCTGAAGCCAGGAGGATCTTGTCTGAGGAGCTAGAGGAGGAGCTCGCAGAAAACATGCGTGCTGGCTGAAGGCGTGAGCGGCCTCACGCCGAAGAAATGCAGGGAAATCGCTTTTGAATTCGCTCAGAAGAACAACATTCCCGTCCCCAACAACTGGGGAGAGCAGAGGTTAGCAGGTCGAGATTGGCTCAGTAGTTTCGTAGCCCGCCACAATCTCTACAGCCACGTAACCGAAGCAGCGTCTTTGGGAAGCTACGGACAGGTCATCAGTTTCAGTCTCATCAACCAGGACGAAATCAAGAAAGAAATCAAAGACGTTCCTGTCCCCGTTCATCAGACTTCAGAGGAGGACAGCGCTCAGATTTGTGATTCAGACCGAGAGCTGTTGGATGCGGACTTATTTCTGACATGATGTCATACGATGGAGCACGCTTTGATGCTTAATCaggttttctgtttgtttaggATTATATTTAACcaaataagtatttaaaaaattattatttcgaAATTCTACATGCAAAATAGGTTcagttaaaatgtgtatttatatattctttaagCTTGCAACGCCAAGGTTGTGGATGAACCATGAACCCCAT
>XM_043250030.1
CGACTCCCTCCCCCTCAGGCGACAAATTCCGGCGGAAGCTCTCTGTGTTAGTACAAATCCTGGACCAGAAACTGCCAAACTGCATCACTTTATTGACTGGGGATGAGTAGAGACTAGAATGTATGGGTTGAGCGGGGGAAGATGAGCCGGTGGTAAGGTGAGACACCTGTGCATCCGAACTTCTGATTTGTCATGTGACCAAACAATCTGGAAGAGCACGAGCATATCCACCTGTCTGTAAATGCAAGAGAAAGGTGGAAAGCGATCATGCCGCGGAACTACATTCGTAAAACGGACTGGGGTTCAGTAACCTACGAGGAGCTGGAGAAAGCGTCCGTTGAAGTGAAGCGCGGGAAATCTATCAGAACAGTggcgaaagaaagaaagatcgGCAGGTCCACCTTGCAGCGCTACATGaagaaagcagaagaaaaaagagagaaaaccgTCGGCTACAGAGGAACGGCTGAAGCCAGGAGGATCTTGTCTGAGGAGCTAGAGGAGGAGCTCGCAGAAAACATGCGGCTGGCTGAAGGCGTGAGCGGCCTCACGCCGAAGAAATGCAGGGAAATCGCTTTTGAATTCGCTCAGAAGAACAACATTCCCGTCCCCAACAACTGGGGAGAGCAGAGGTTAGCAGGTCGAGATTGGCTCAGTAGTTTCGTAGCCCGCCACAATCTCTACAGCCACGTAACCGAAGCAGCGTCTTTGGGAAGCTACGGACAGGTCATCAGTTTCAGTCTCATCAACCAGGACGAAATCAAGAAAGAAATCAAAGACGTTCCTGTCCCCGTTCATCAGACTTCAGAGGAGGACAGCGCTCAGATTTGTGATTCAGACCGAGAGCTGTTGGATGCGGACTTATTTCTGACATGATGTCATACGATGGAGCACGCTTTGATGCTTAATCaggttttctgtttgtttaggATTATATTTAACcaaataagtatttaaaaaattattatttcgaAATTCTACATGCAAAATAGGTTcagttaaaatgtgtatttatatattctttaagCTTGCAACGCCAAGGTTGTGGATGAACCATGAACCCCATAACAATTGTCTCTGTTTCTTTAATTCTGGGGGCTGGGGGTTAGTTATACTGTGCATTAAATTGTGTTTCGAGATATTAAATATGGTGCTTTCAGAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107715885

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110245 False 1035 TUCP 0.47 5 3663944 3667908
XM_043250030.1 True 1164 mRNA 0.46 6 3663912 3668006

Neighbor

gene id symbol gene type direction distance location
carm1l LOC107702592,LOC107715849,LOC107679043,LOC107573847 coding upstream 23051 3627167 ~ 3640861 (+)
LOC122352579 LOC107702598,LOC107715893,LOC107653494,LOC107732273 coding upstream 95415 3496746 ~ 3568497 (+)
LOC122352557 plppr1,LOC107750956,LOC107653496,LOC107702599,LOC107710008,LOC102776600 coding upstream 208125 3413925 ~ 3455787 (+)
LOC122352986 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 coding upstream 355562 3271890 ~ 3308350 (+)
LOC122352595 grin3a,LOC107710005,LOC107750958,LOC107653477,LOC107702562 coding upstream 502642 3144873 ~ 3161270 (+)
sptlc1 sptlc1,LOC107715883,LOC107720388,LOC107702586,LOC107683465,LOC107560407 coding downstream 29535 3697541 ~ 3708314 (+)
ror2 ror2,LOC107702585,LOC107683466 coding downstream 41660 3709666 ~ 3767673 (+)
nfil3 LOC107702584,LOC107558263,LOC107715881,LOC107720386,LOC107560408 coding downstream 100748 3768754 ~ 3772710 (+)
auh auh,LOC107720385 coding downstream 105504 3773510 ~ 3790180 (+)
ankrd55 ankrd55,LOC107702571,LOC107670032,LOC107737049 coding downstream 140008 3808014 ~ 3818485 (+)
LOC122353153 NA non-coding upstream 76018 3587363 ~ 3587894 (+)
G74392 NA non-coding upstream 882595 2780642 ~ 2781317 (+)
G74389 NA non-coding upstream 947155 2716522 ~ 2716757 (+)
G74388 NA non-coding upstream 947620 2715379 ~ 2716292 (+)
G74387 NA non-coding upstream 948561 2715056 ~ 2715351 (+)
G74585 NA non-coding downstream 100195 3768201 ~ 3768652 (+)
G74589 NA non-coding downstream 120751 3788757 ~ 3844512 (+)
G74596 LOC107715844 non-coding downstream 186310 3854316 ~ 3858952 (+)
G74626 NA non-coding downstream 223885 3891891 ~ 3893020 (+)
G74667 NA non-coding downstream 452858 4120864 ~ 4122658 (+)
enoph1 enoph1,LOC107702573,LOC107715850,LOC107679042,LOC107731803 other upstream 46396 3588244 ~ 3617516 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 59696 3596606 ~ 3604216 (+)
lyrm7 lyrm7,LOC107732862,LOC107715852 other upstream 73801 3588418 ~ 3590111 (+)
LOC122352855 LOC107702575,LOC107715854,LOC107732942,LOC107569381,LOC107653476,LOC100002406 other upstream 89560 3569278 ~ 3574352 (+)
il11ra LOC107756541,LOC107554229,LOC107750187,LOC107653503 other upstream 883437 2777859 ~ 2780475 (+)
cdc42se2 cdc42se2 other downstream 997 3669003 ~ 3694596 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other downstream 345028 4013034 ~ 4120447 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 813261 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 1448860 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 1570273 5238279 ~ 5250137 (+)

Expression


Co-expression Network