LOC122353137 (palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382)


Basic Information

Item Value
gene id LOC122353137
gene name palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3337339 ~ 3377784 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110254
CAGGAATCTAGTTTTAGTTTCTCTTCTGCTCTCCACCGGACAGATGCGGTGAATTACAACTGCTCCCAGATCCCGGACCTCCCAGAACTGAACTCCCAAACTCCCGTCTCAGCTTCAGGGGATCAGCAACCGCCAAGAAAATCTGCATTATACGCCATGGAGATCAGCGTCGAGAAGGACCGGAAAACGGGTGAAAGCAAGATCCTCTCGGCCTCTGCGGTCAGCCCACGTGACGCTCACCAGAGGGGCGTCAAAGTCTACGACGACGGCCGCAAAGTGATCTACGAGGTGCGTTCTGGGGGATCTACAACACTGGAGAATGGCACGCACCCCTGGAGCCCCGGCGAGGTGGACGAGCTCATGCAACAAGTGGGCCAGTCCCAGCAACGAAGCGACGGAGCCCGGGTCACCGTCACACCCGCTGAGCCCCAGACAACTACAGGACAGGTCAGCTCCAAGCAAGACCACAAACAATCCCCGAGGAAAGGCTACCAAGGTGAGGTCACGGAGACTCCACAGGCCTCTGCCGACAAACCGGTGACCATGATCTTCATGGGCTACCACAGCGTCGAGGACGAGGAGGAATCCAAGAAGCTGCTTGGCTTCGACGGCACCATCAAGGCTGAGATCGTCCTAATCGATGAGGACGATGAGAAATCTCTTCGGGAGAAGACCGTCACTGATATCTCCACCATCGATGGAAACGCCGCTGACCTTGTGTCGGGCCGGCCTCTGTCCGATACCACCGAACTGTCCTCAGAAGGCAAAGATGAAAGCTCGACCAAGGAACTGCCACCCACAGG
>XM_043251049.1
CGGGACCCCAGAGCTGAGCAAACAAGCGAGACGGACGCTTCGACTGTCAGCCATCTGAGGAATGCGGAGGCTCGCGTATCAGCACAGTGATCCTGCAGAACCTAGAGAAGCTAGACAGAGCGGAAGCTGCAAGCTGTAGCATCCAGCATTAATCTGATATCTCAGGAAAAGGTGGAGGAGAGCCGTCAGTCTCAAGGTGATGCTGGTAACAGCGGCGCAGAGCAGACGAGGAAAACCAGAGAACGAGGAAGAGGGAGAAGACGCAGCCATGATGGGCACACCTCTACGGAGGAAAGCCCCGGCATATGAGATGGCTGAAGCTGAACTTCACAAGGAAAGGCTCCAAGCCCTGGCGGAAAAACGGAAAAGACAAGCCGAGATAGAGGACAAAAGGCGACAACTCGATGAACTTGTTCTACAACTTCAACATTTTaagTCCAAAGCCATGAGGGAGAGGTGGCTTCTCCAGGGGACACCAGCGGTGCcacaagaggaagaagaaggcCGGAGAAAACAGGTTGAGCAAGACGAACATCACGCTAAGACACTAGAAGATGCTATTCATAGATTGGAATCAGAAATCAGTCTTTTGGAGAATGAAGAATCACAGATATCAGCTAAAGAACAAGTTCTCAGAGAGCGATCATGGGAAACAGAGAGATCTATTGAAGATCTCCAGAAGAGTCTTCAGAATCAAGATGGAGATGCGGTGAATTACAACTGCTCCCAGATCCCGGACCTCCCAGAACTGAACTCCCAAACTCCCGTCTCAGCTTCAGGGGATCAGCAACCGCCAAGAAAATCTGCATTATACGCCATGGAGATCAGCGTCGAGAAGGACCGGAAAACGGGTGAAAGCAAGATCCTCTCGGCCTCTGCGGTCAGCCCACGTGACGCTCACCAGAGGGGCGTCAAAGTCTACGACGACGGCCGCAAAGTGATCTACGAGGTGCGTTCTGGGGGATCTACAACACTGGAGAATGGCACGCACCCCTGGAGCCCCGGCGAGGTGGACGAGCTCATGCAACAAGTGGGCCAGTCCCAGCAACGAAGCGACGGAGCCCGGGTCACCGTCACACCCGCTGAGCCCCAGACAACTACAGGACAGGTCAGCTCCAAGCAAGACCACAAACAATCCCCGAGGAAAGGCTACCAAGGTGAGGTCACGGAGACTCCACAGGCCTCTGCCGACAAACCGGTGACCATGATCTTCATGGGCTACCACAGCGTCGAGGACGAGGAGGAATCCAAGAAGCTGCTTGGCTTCGACGGCACCATCAAGGCTGAGATCGTCCTAATCGATGAGGACGATGAGAAATCTCTTCGGGAGAAGACCGTCACTGATATCTCCACCATCGATGGAAACGCCGCTGACCTTGTGTCGGGCCGGCCTCTGTCCGATACCACCGAACTGTCCTCAGAAGGCAAAGATGAAAGCTCGACCAAGGAACTGCCACCCACAGGTATTGAAAAAAAACGCTGCCAGTGCTGTGCTGTCATGTGACCTTTCT

Function

symbol description
palm2 Predicted to be involved in regulation of cell shape. Predicted to be located in membrane. Orthologous to human PALM2AKAP2 (PALM2 and AKAP2 fusion).

NR:

description
PREDICTED: paralemmin-2-like isoform X5

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU110254 False 803 TUCP 0.57 2 3337388 3339929
XM_043251049.1 True 1511 mRNA 0.54 10 3337339 3377784

Neighbor

gene id symbol gene type direction distance location
LOC122352385 LOC101886557 coding downstream 76724 3259677 ~ 3260615 (-)
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding downstream 120528 3167723 ~ 3216811 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding downstream 372906 2898351 ~ 2964433 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding downstream 486611 2829977 ~ 2850728 (-)
musk musk,LOC107653500 coding downstream 528353 2796845 ~ 2808986 (-)
snx30 snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846 coding upstream 196512 3574296 ~ 3586506 (-)
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding upstream 212483 3590267 ~ 3594821 (-)
hnrnpdl hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490 coding upstream 230183 3607967 ~ 3612283 (-)
tmem150c tmem150c,LOC107558260 coding upstream 239731 3617515 ~ 3625783 (-)
sec31a LOC107715884,LOC107702588 coding upstream 266285 3644069 ~ 3663881 (-)
G74459 NA non-coding downstream 287821 3049232 ~ 3049518 (-)
G74455 NA non-coding downstream 447391 2889445 ~ 2889948 (-)
G74436 NA non-coding downstream 555823 2780642 ~ 2781516 (-)
G74367 NA non-coding downstream 877187 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 882477 2453158 ~ 2454862 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 72753 3450537 ~ 3454994 (-)
G74551 NA non-coding upstream 209651 3587435 ~ 3587894 (-)
G74574 NA non-coding upstream 321821 3699605 ~ 3700769 (-)
G74614 LOC107715880,LOC107702582,LOC107558262,LOC107560412,LOC107670041,LOC107737037 non-coding upstream 402275 3780059 ~ 3834370 (-)
G74609 NA non-coding upstream 443607 3821391 ~ 3824596 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 570144 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1139910 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 1490437 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1849331 1483399 ~ 1488008 (-)
G74031 NA other downstream 1863461 1466751 ~ 1473878 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 223828 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 527830 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 1641523 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3160338 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 3250641 6628425 ~ 6631188 (-)

Expression


Co-expression Network