G74689 (sh2d4a,LOC107740790,LOC107564121,LOC107715862,LOC107665475)


Basic Information

Item Value
gene id G74689
gene name sh2d4a,LOC107740790,LOC107564121,LOC107715862,LOC107665475
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4245198 ~ 4249108 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110518
CCGGCTGATAGCGCCGCTGTTGTTTGCGGTGTTTctgggtttgggtttgggtgGAGGGTTTGGGTTTGTGCTGCCGAAGGCTTTTGTCATGGCCGCGACGCGTCCTCTTTCCAGAGCTTTGAGTGAGCGCCTGCGGTGGTCCTCGATAGTTTGCTTGGCCAGGGATTGTCTGCGCACGTCTGCAGCTTTTGACTTCTGCACTGCCTTCAGGCTGATGTAGATCTGCTGCTTTCTCTCCTGCTCCAGCCTCCTCAGCTCCTCCTCAGCCTTACGCCTCTCCTCCATCTCCAGTTTCTGACAAAGAACAAGCCTCGAGGTCAGGACTGACCCAAACCGTTTCCCTCTTCATTTTGTTTGATACAAAAGTCGAGACGGGGAGCACCTTGAGCTCCATCTCCGCTCTCCTCTGCTCCTTCTGCTGAACCTCCTGCTCTGACAAAACCACCTTCTCTGGTTCGAGATACAGGCCAGAAAAGCGCTTCTCCAGCTCTGCCTCTTTCTTAGCCCtctctgcctctctctggGCCTGCAGGGCTGCTCTCTGGGCCATGATCTCATCACAGATTTGATTGTAGGGTTTGTCATCATGATGCTCTCCCATCACCCAAACCCACACATCGTCATCCAGACCCTTCATCCACGACACCATCTTTCCTGAAACTTTTTGACTTTAACGCGTGCAGCTTCCTCTTTCTCCATCCgcgtctctctttctctccatttccGGATCTGCTCCTCTCTCATCTTAAAGAACAGAATCTGCTTCTGTTCCTCATTCAGTTCGGCCAGCAGTTCCGGCTCGATGTACATGTCAGCCAATATCTGCTGCAGCATCTTCACGCCTCAGTAACACACACCTCCTTGACAAGCTCAAATACCTTCACTAAAAGGGA

Function

symbol description
sh2d4a Predicted to be active in cytoplasm. Orthologous to human SH2D4A (SH2 domain containing 4A).

NR:

description
PREDICTED: SH2 domain-containing protein 4A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110518 True 893 lncRNA 0.53 4 4245198 4249108

Neighbor

gene id symbol gene type direction distance location
slc38a9 slc38a9,LOC107564110,LOC107670042,LOC107740785,LOC107715861,LOC107566906,LOC107665474 coding upstream 3794 4231670 ~ 4241404 (+)
ddx4 LOC107665473,LOC107715859,LOC107740783,LOC107670045 coding upstream 15433 4209639 ~ 4229765 (+)
reep5 reep5,LOC107740782,LOC107715872,LOC107098485 coding upstream 113766 4126893 ~ 4131432 (+)
zgc:114200 zgc:114200,aph1a,LOC107572194,LOC107737132,LOC107670051,LOC107572192,LOC108427283 coding upstream 140411 4098046 ~ 4104787 (+)
tpm2 tpm2,LOC107670037,LOC107737084,LOC108276716,LOC108427282,LOC103044350,LOC108242564,LOC107572193,LOC107715874,LOC100710292,LOC106571564 coding upstream 148295 4081583 ~ 4096903 (+)
psd3l LOC107564111,LOC107715858,LOC107665472,LOC107740791,LOC107681482,LOC108427269 coding downstream 9412 4258520 ~ 4336441 (+)
fut10 fut10,LOC107681479,LOC107564112,LOC107740796 coding downstream 96105 4345213 ~ 4349700 (+)
LOC122353166 tex15,LOC107715856 coding downstream 617606 4866714 ~ 4887569 (+)
purg purg,LOC107715864,LOC107758727,LOC107564122,LOC107682501,LOC107102481 coding downstream 620077 4869185 ~ 4875661 (+)
ppp2cb ppp2cb,LOC107758729,LOC105021738 coding downstream 642482 4891590 ~ 4906268 (+)
G74686 NA non-coding upstream 43808 4197532 ~ 4201390 (+)
G74659 NA non-coding upstream 69080 4164958 ~ 4176118 (+)
G74681 zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107670048,LOC107564120,LOC107715868 non-coding upstream 84881 4155047 ~ 4160317 (+)
G74680 NA non-coding upstream 91919 4151458 ~ 4153279 (+)
G74667 NA non-coding upstream 122540 4120864 ~ 4122658 (+)
G74657 NA non-coding downstream 285492 4534600 ~ 4537373 (+)
G74704 NA non-coding downstream 346215 4595323 ~ 4596083 (+)
G74712 NA non-coding downstream 373449 4622557 ~ 4622766 (+)
G74814 NA non-coding downstream 430586 4679694 ~ 4680232 (+)
G74824 NA non-coding downstream 573280 4822388 ~ 4822962 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 124751 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 550602 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 577192 3663912 ~ 3668006 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 640982 3596606 ~ 3604216 (+)
lyrm7 lyrm7,LOC107732862,LOC107715852 other upstream 655087 3588418 ~ 3590111 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other downstream 232159 4481267 ~ 4529002 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 867758 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 989171 5238279 ~ 5250137 (+)
G74965 NA other downstream 1007730 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 1249539 5498647 ~ 5500388 (+)

Expression


Co-expression Network