G74889 (colgalt1,LOC106607427,LOC106600909)


Basic Information

Item Value
gene id G74889
gene name colgalt1,LOC106607427,LOC106600909
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5019196 ~ 5020801 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110831
CCGAGCGGAATGTGTGTAGACCTTTAATTGCTGTCCTGATGATACgacagaaaaacagacaatGAGGCGTTTATGGTTACTGGCTACGACTGAGGAAGTAACCGCTTGAAACACCACCGAAGAGGTTAATGGTATCACAAGgcctaaaaataacaacatccTTCAAGTTAAAATAACATGCTTCATGCCTTACAATAACAACATGTTTCATGtctcttttattattgttaagaaCGACTACGTTCATTTCTGGATTGTGAACAccgcataaaaaaatattagttacGTGTGattatttcaggttttttttctttcagattgaTTGAACTGTTCTAAAAACATCAGTGGACAGATTAACAAAATATCCTTAAGATAAAATCCTTCATAGCTCctgttttcttcttattttttaacCTAAGAAGGATTAAAAGAATTTAGAGTTGTATCATTTGCTCAGCAGTagatcctctgtagtgaatgggtgccgtcagaatgagagtcaaaacagctgataaaaacatcagaataatccacacgACTTGAGTCTATCAGTTAATGCGTTATGTAATTCATATAAACAGATCTATTATTAGGGCACTTCTGGACATAATACATAAGCCCTATAATAAAGTTTCCTCCAGTGAAAACATCCATCTCCTGTCGTCCTCTCTaatcaaaatccaccaacatattattattcatactaATCTGTGCACATTCTCATGTTTTAGACAAGGCTGGAGGACGTTATGGATTATGAACACATATTGTGGCCAGAAGTCatgatttaaagttaaaatgccataataatgcatttgtttcttacaaacccAAAGCTTTtaacttcacaagatgttaattgatgtttttaatcagctcttTGGGactctcatcctgacggcaccccttcactgcagaggatccattggtgagtaAGTGAAATAATGTtgaatttctccaaatcggCTCTGGTGAAGAACAAAGTCCTCTATATcacggatggcctgagggtgagtacattttcagtcatttttttttatttttaggtgaactaatTCTATATGAATCTTTCAAGACTTGCCCTTAAGTACATCCTTACAAACTTTACATTTAGTATACCTGCTAACTTCTCTCCTAAGAAGATATTCAGGAATGTTCCTGGTGTTTTTAAATCACAGGATACAGTGAAGAACAGATCAGAAAGCGCAGTCCGGCAAATTTGATCTCCAAATAAAAGGGACAAATGATTAAacgcaaaaatatatttttttcaggcaaacataaaaaaaaaatttctgaaAATGCCTCTTCTGGTCAGATATATTGTGCTTATAGAGCGGAGGACTTTGCCCCCAGAAGCAAGTCTAATGGTGTGTCCAAAACAATTTCTCTCATAGTTCGTCTCGAGCTGTTCTGTCCAGAGGAGACTGGAGCACATCTGAGTTTTGGGCCTCTGTGCTGATTTCAGCCTGTTCCCGGGTTTTACCCGAGCGCTTCCTGTCCCAGTCTGTGCGCACTTTCTCATTGTCCCACACAGTGGAGGTTTCTGTGTCACTGATGTACCCAGGTTCACCCGTGTAATGTGTAGGAAACACAAGCAAGGGCT
>TU110833
aaaaataacaacatccTTCAAGTTAAAATAACATGCTTCATGCCTTACAATAACAACATGTTTCATGtctcttttattattgttaagaaCGACTACGTTCATTTCTGGATTGTGAACAccgcataaaaaaatattagttacGTGTGattatttcaggttttttttctttcagattgaTTGAACTGTTCTAAAAACATCAGTGGACAGATTAACAAAATATCCTTAAGATAAAATCCTTCATAGCTCctgttttcttcttattttttaacCTAAGAAGGATTAAAAGAATTTAGAGTTGTATCATTTGCTCAGCAGTagatcctctgtagtgaatgggtgccgtcagaatgagagtcaaaacagctgataaaaacatcagaataatccacacgACTTGAGTCTATCAGTTAATGCGTTATGTAATTCATATAAACAGATCTATTATTAGGGCACTTCTGGACATAATACATAAGCCCTATAATAAAGTTTCCTCCAGTGAAAACATCCATCTCCTGTCGTCCTCTCTaatcaaaatccaccaacatattattattcatactaATCTGTGCACATTCTCATGTTTTAGACAAGGCTGGAGGACGTTATGGATTATGAACACATATTGTGGCCAGAAGTCatgatttaaagttaaaatgccataataatgcatttgtttcttacaaacccAAAGCTTTtaacttcacaagatgttaattgatgtttttaatcagctcttTGGGactctcatcctgacggcaccccttcactgcagaggatccattggtgagtaAGTGAAATAATGTtgaatttctccaaatcggCTCTGGTGAAGAACAAAGTCCTCTATATcacggatggcctgagggtgagtacattttcagtcatttttttttatttttaggtgaactaatTCTATATGAATCTTTCAAGACTTGCCCTTAAGTACATCCTTACAAACTTTACATTTAGTATACCTGCTAACTTCTCTCCTAAGAAGATATTCAGGAATGTTCCTGGTGTTTTTAAATCACAGGATACAGTGAAGAACAGATCAGAAAGCGCAGTC
>TU110834
CCGAGCGGAATGTGTGTAGACCTTTAATTGCTGTCCTGATGATACgacagaaaaacagacaatGAGGCGTTTATGGTTACTGGCTACGACTGAGGAAGTAACCGCTTGAAACACCACCGAAGAGGTTAATGGTATCACAAGgcctaaaaataacaacatccTTCAAGTTAAAATAACATGCTTCATGCCTTACAATAACAACATGTTTCATGtctcttttattattgttaagaaCGACTACGTTCATTTCTGGATTGTGAACAccgcataaaaaaatattagttacGTGTGattatttcaggttttttttctttcagattgaTTGAACTGTTCTAAAAACATCAGTGGACAGATTAACAAAATATCCTTAAGATAAAATCCTTCATAGCTCctgttttcttcttattttttaacCTAAGAAGGATTAAAAGAATTTAGAGTTGTATCATTTGCTCAGCAGTagatcctctgtagtgaatgggtgccgtcagaatgagagtcaaaacagctgataaaaacatcagaataatccacacgACTTGAGTCTATCAGTTAATGCGTTATGTAATTCATATAAACAGATCTATTATTAGGGCACTTCTGGACATAATACATAAGCCCTATAATAAAGTTTCCTCCAGTGAAAACATCCATCTCCTGTCGTCCTCTCTaatcaaaatccaccaacatattattattcatactaATCTGTGCACATTCTCATGTTTTAGACAAGGCTGGAGGACGTTATGGATTATGAACACATATTGTGGCCAGAAGTCatgatttaaagttaaaatgccataataatgcatttgtttcttacaaacccAAAGCTTTtaacttcacaagatgttaattgatgtttttaatcagctcttTGGGactctcatcctgacggcaccccttcactgcagaggatccattggtgagtaAGTGAAATAATGTtgaatttctccaaatcggCTCTGGTGAAGAACAAAGTCCTCTATATcacggatggcctgagggtgagtacattttcagtcatttttttttatttttaggtgaactaatTCTATATGAATCTTTCAAGACTTGCCCTTAAGTACATCCTTACAAACTTTACATTTAGTATACCTGCTAACTTCTCTCCTAAGAAGATATTCAGGAATGTTCCTGGTGTTTTTAAATCACAGGATACAGTGAAGAACAGATCAGAAAGCGCAGTC

Function

symbol description
colgalt1 Enables procollagen galactosyltransferase activity. Involved in positive regulation of collagen fibril organization. Located in endoplasmic reticulum lumen.

NR:

description
PREDICTED: procollagen galactosyltransferase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110831 True 1606 lncRNA 0.38 1 5019196 5020801
TU110833 False 1066 lncRNA 0.34 1 5019341 5020406
TU110834 False 1211 lncRNA 0.36 1 5019196 5020406

Neighbor

gene id symbol gene type direction distance location
hint1 hint1,LOC107665476,LOC107684867 coding upstream 104581 4912471 ~ 4914615 (+)
ppp2cb ppp2cb,LOC107758729,LOC105021738 coding upstream 112928 4891590 ~ 4906268 (+)
LOC122353166 tex15,LOC107715856 coding upstream 131627 4866714 ~ 4887569 (+)
purg purg,LOC107715864,LOC107758727,LOC107564122,LOC107682501,LOC107102481 coding upstream 143535 4869185 ~ 4875661 (+)
fut10 fut10,LOC107681479,LOC107564112,LOC107740796 coding upstream 669496 4345213 ~ 4349700 (+)
LOC122352870 NA coding downstream 11353 5032154 ~ 5034484 (+)
LOC122352868 LOC107587995,LOC107711162,LOC107672432,LOC107757375,LOC107587996 coding downstream 14232 5035033 ~ 5038505 (+)
LOC122352867 LOC107711243,LOC107672495,LOC107587952,LOC107757372,LOC107567248,LOC107670491 coding downstream 18045 5038846 ~ 5045538 (+)
si:dkey-210j14.3 LOC107672496,LOC107757375,LOC107711244,LOC107711245 coding downstream 25450 5046251 ~ 5049149 (+)
LOC122352997 LOC107711241,LOC107672456,LOC107588012,LOC107670466,LOC107757355,LOC107567234 coding downstream 37696 5058497 ~ 5067537 (+)
G74882 NA non-coding upstream 16754 5000682 ~ 5002442 (+)
G74873 NA non-coding upstream 69339 4949549 ~ 4949857 (+)
G74871 NA non-coding upstream 77894 4940998 ~ 4941302 (+)
G74870 NA non-coding upstream 91057 4927879 ~ 4928139 (+)
G74868 NA non-coding upstream 91474 4927495 ~ 4927722 (+)
G74902 LOC107560569,LOC107739969 non-coding downstream 53127 5073928 ~ 5074206 (+)
G74906 NA non-coding downstream 66479 5087280 ~ 5087591 (+)
G74908 NA non-coding downstream 76843 5097644 ~ 5098564 (+)
G74914 NA non-coding downstream 86984 5107785 ~ 5108114 (+)
G74958 NA non-coding downstream 214798 5235599 ~ 5235955 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other upstream 490194 4481267 ~ 4529002 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 898749 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 1324600 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 1351190 3663912 ~ 3668006 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 1414980 3596606 ~ 3604216 (+)
LOC122352404 LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489 other downstream 96065 5116866 ~ 5123373 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 217478 5238279 ~ 5250137 (+)
G74965 NA other downstream 236037 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 477846 5498647 ~ 5500388 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other downstream 539850 5560651 ~ 5562085 (+)

Expression


Co-expression Network