LOC122352404 (LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489)


Basic Information

Item Value
gene id LOC122352404
gene name LOC107670527,LOC107567246,LOC107587997,LOC107757377,LOC107711240,LOC107672489
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5116866 ~ 5123373 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110851
GGCACTATGGCATCATATTCGTCACCGAAACACCATACCCTCCATCTTTGCACAAACCGTGGCTCGGCACCCGGACAAGCCCGCGCTTGTGTACGAAGCCACAGGAGAAACGTGGACTTTCTCCCACTTAGATCAGATCTCCAATGCTGTGGCCCAATGGGCTCTGAGCCAGGGCTGGACCTCAGGAGATGTGGTGGCCCTGTTCATGGAGAGCCGGCCGCTCCAAGTGGCCCTCTGGCTGGGCCTGGCCAAAGTAGGCGTCGAGGCCGCTCTGATCAACTTTAACCTCCGACGGGATTCACTCCTGCACTGCATGGGGGTGTCAGCATCCCGAGCGCTGGTTTTCGGAGCAGAGCTAGCAGACGCGGTGTATGAAGTGAGCTCCTCTTTGAGTGAGAGTATGGTGCGGTTCAGCACGGGAGACCTCAGACCAGACCAGATGGCCGCTCTGAAATGTCACCCCCTTGACTCCATTCTGGCATCGGCCCCTCGAAACCCACCACTCTGTACCGTGTCCAAGGGCTTCAATGATCGTTTGTTCTATATCTACACTTCTGGCACCACAGGACTCCCAAAAGCTGCTATAGTGGTGCACAGTCGATATTACAGGATTGCTGCTTTCGGCTACCATTCTTTTCGAATGCAGCCAGATGACATTATCTATGATTGTTTACCCCTCTACCATTCAGCAGGTAATATTATGGGGGTTGGCCAGTGTTTGATTCACGGTATAACCGTGGTGGTCAAGAAGAAGTTCTCCGCGAGTCGCTTCTGGGAAGACTGCATCAAA
>TU110852
ACCAACTCCGGCTTCATGTTGCTCCCAAACGGCCAGTCCTTGTTAGTAAACACAtagtttgtcaaaaaaaaaaagttgctgcACGCGAAGGGAAGATACTTAGTGAGTAGCGTGACGTCTGAATGTAACAGAGTATCGTAGCGAGTATTCCCGCCCTCTGTGTTCTCGGTCGCTCGTGTTATTTTTATAGGGGTCAGTAGTTTGGACATAACTGTGGTCAGTCAACCTCTAACCGCACTGCAAGGTCGTCCCATGTCTTGACAGATCAGGGCTGACTGAACTACATCTCTCTACCATAGGATGCACTATGTGGCGAGTGGCTCCCTGTCCTTGGGGTCCCTGGGCCTGCTCCGTCTGTTTGGGGCATCCTGGTCCTGGAGCCTTGCAGCAGGTTTGAGTGTTTACTTGGGAACTGGAGGCTGGAGGTACCTGTATGTGGTGGTTCGTACGGCTAAAAGGGACATCAAGTGagtgactgaaaaaaaataaaacataaactggTTGCCTGGTCTTATCTGGTCTTCCAGGGTGGTCAAAACTGGTTTGCGGTCTGGTTTTTAATCACTTCTTTAGCTGGGCGACAGCAAAAACCAACTTGGCCAGGCTGgcagaccagcttaaaccagcaaagaaG
>TU110913
GGGATCACCGTGGTGCTGAGGAGGAAGTTTTCTGTGTCTGAGTTTTGGAACGACTGTCGGGAACACGAGGTGACGGTCATCCAGTACATCGGAGAGGTCATGCGTTACTTGTGCAACGCACCCAAGAGCGAGCGTGAGCGGGATCACCGTGTGCGTCTGGCTCTGGGGATCGGCATCCGAGCGGACACATGGGAGGACTTCCTGCGCCGCTTCGGGAACGTGTGCATCTGTGAGTGCTACGGAGCCACCGAAGGAAACATCGGATTCATCAACTACACCGGGAAGACCGGCTCCATCGGGAGAGTGACCGCCATCCACAAGatgctCACCCCTTACGCCTTCATTCGTTTTAATCCGGAGACGGAGGAGCCGCTGCGAGACTCTAACGGACTCTGTGTGGAGGTCTCTCCAGGTGAAACCGGGCTGCTGGTGGCAAAGATCAATAAGATCGCTCCGTTCAGTGGTTACGCTAAAAACCCGGCGcaaacagagaagaagaagctgaggaACGTCTTTAAGAGAGGAGATGTGTACTTCAACACCGGAGATCTCATATTAGCCGACCGCGACGGCTTCCTTTACTTCCAGGACCGCGTTGGAGACACGTTCCGATGGAAAGGAGAAAACGTGGCCACGACTGAAGTGTCTGAGGTTTTGCTGATGCTGGATTCTGTGGAAGCTGCAAACGTCTACGGTGTGAGAGTATCAGGTCATGAGGGACGGATCGGGATGGCAGCTCTCAAACTCAGAGACGGGAAGGAGTTTGACCGATCtgctacatacacacacctgaAGAAGCTCCTGCCGGCCTACGCCAGACCTCACTTCATCAGGatac
>XM_043249821.1
CTGGCACTATGGCATCATATTCGTCACCGAAACACCATACCCTCCATCTTTGCACAAACCGTGGCTCGGCACCCGGACAAGCCCGCGCTTGTGTACGAAGCCACAGGAGAAACGTGGACTTTCTCCCACTTAGATCAGATCTCCAATGCTGTGGCCCAATGGGCTCTGAGCCAGGGCTGGACCTCAGGAGATGTGGTGGCCCTGTTCATGGAGAGCCGGCCGCTCCAAGTGGCCCTCTGGCTGGGCCTGGCCAAAGTAGGCGTCGAGGCCGCTCTGATCAACTTTAACCTCCGACGGGATTCACTCCTGCACTGCATGGGGGTGTCAGCATCCCGAGCGCTGGTTTTCGGAGCAGAGCTAGCAGACGCGGTGTATGAAGTGAGCTCCTCTTTGAGTGAGAGTATGGTGCGGTTCAGCACGGGAGACCTCAGACCAGACCAGATGGCCGCTCTGAAATGTCACCCCCTTGACTCCATTCTGGCATCGGCCCCTCGAAACCCACCACTCTGTACCGTGTCCAAGGGCTTCAATGATCGTTTGTTCTATATCTACACTTCTGGCACCACAGGACTCCCAAAAGCTGCTATAGTGGTGCACAGTCGATATTACAGGATTGCTGCTTTCGGCTACCATTCTTTTCGAATGCAGCCAGATGACATTATCTATGATTGTTTACCCCTCTACCATTCAGCAGGTAATATTATGGGGGTTGGCCAGTGTTTGATTCACGGTATAACCGTGGTGGTCAAGAAGAAGTTCTCCGCGAGTCGCTTCTGGGAAGACTGCATCAAACATCATCAGATGGAGAGATTTAAGTCATTCATTCGTCTGTCTGTGCTTTCAGGGATCACCGTGGTGCTGAGGAGGAAGTTTTCTGTGTCTGAGTTTTGGAACGACTGTCGGGAACACGAGGTGACGGTCATCCAGTACATCGGAGAGGTCATGCGTTACTTGTGCAACGCACCCAAGAGCGAGCGTGAGCGGGATCACCGTGTGCGTCTGGCTCTGGGGATCGGCATCCGAGCGGACACATGGGAGGACTTCCTGCGCCGCTTCGGGAACGTGTGCATCTGTGAGTGCTACGGAGCCACCGAAGGAAACATCGGATTCATCAACTACACCGGGAAGACCGGCTCCATCGGGAGAGTGACCGCCATCCACAAGatgctCACCCCTTACGCCTTCATTCGTTTTAATCCGGAGACGGAGGAGCCGCTGCGAGACTCTAACGGACTCTGTGTGGAGGTCTCTCCAGGTGAAACCGGGCTGCTGGTGGCAAAGATCAATAAGATCGCTCCGTTCAGTGGTTACGCTAAAAACCCGGCGcaaacagagaagaagaagctgaggaACGTCTTTAAGAGAGGAGATGTGTACTTCAACACCGGAGATCTCATATTAGCCGACCGCGACGGCTTCCTTTACTTCCAGGACCGCGTTGGAGACACGTTCCGATGGAAAGGAGAAAACGTGGCCACGACTGAAGTGTCTGAGGTTTTGCTGATGCTGGATTCTGTGGAAGCTGCAAACGTCTACGGTGTGAGAGTATCAGGTCATGAGGGACGGATCGGGATGGCAGCTCTCAAACTCAGAGACGGGAAGGAGTTTGACCGATCtgctacatacacacacctgaAGAAGCTCCTGCCGGCCTACGCCAGACCTCACTTCATCAGGatacaggtcacacacacacatgaacacacccAAGAACACTCCATAATACACacccatgaacacacacacacactcactgtctCACACACtatcactcacactctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU110851 False 790 TUCP 0.54 5 5117851 5120654
TU110852 False 634 lncRNA 0.49 2 5116866 5117649
TU110913 False 838 TUCP 0.55 6 5121489 5123272
XM_043249821.1 True 1782 mRNA 0.54 11 5117849 5123373

Neighbor

gene id symbol gene type direction distance location
LOC122352997 LOC107711241,LOC107672456,LOC107588012,LOC107670466,LOC107757355,LOC107567234 coding upstream 49329 5058497 ~ 5067537 (+)
si:dkey-210j14.3 LOC107672496,LOC107757375,LOC107711244,LOC107711245 coding upstream 67717 5046251 ~ 5049149 (+)
LOC122352867 LOC107711243,LOC107672495,LOC107587952,LOC107757372,LOC107567248,LOC107670491 coding upstream 71328 5038846 ~ 5045538 (+)
LOC122352868 LOC107587995,LOC107711162,LOC107672432,LOC107757375,LOC107587996 coding upstream 78361 5035033 ~ 5038505 (+)
LOC122352870 NA coding upstream 82382 5032154 ~ 5034484 (+)
sppl3 sppl3 coding downstream 209637 5333010 ~ 5357455 (+)
kcnn2 si:dkey-76p7.5,kcnn2,LOC106564970,LOC107687918,LOC107686472,LOC107567448,LOC106563202 coding downstream 288310 5411683 ~ 5446436 (+)
drg1 drg1,LOC107744129,LOC107567440,LOC107713382,LOC107555524,LOC107687909 coding downstream 323958 5447331 ~ 5451955 (+)
slc20a1b LOC107686476,LOC107744132,LOC107687859,LOC107713386,LOC107555522 coding downstream 341584 5464957 ~ 5477005 (+)
pigo pigo,LOC107713385,LOC107686475,LOC107744133,LOC107687847 coding downstream 359392 5482765 ~ 5491729 (+)
G74914 NA non-coding upstream 8752 5107785 ~ 5108114 (+)
G74908 NA non-coding upstream 18302 5097644 ~ 5098564 (+)
G74906 NA non-coding upstream 29275 5087280 ~ 5087591 (+)
G74902 LOC107560569,LOC107739969 non-coding upstream 42660 5073928 ~ 5074206 (+)
G74889 colgalt1,LOC106607427,LOC106600909 non-coding upstream 96065 5019196 ~ 5020801 (+)
G74958 NA non-coding downstream 112226 5235599 ~ 5235955 (+)
G74992 NA non-coding downstream 259766 5383139 ~ 5385855 (+)
G75007 NA non-coding downstream 332998 5456371 ~ 5458861 (+)
G75067 NA non-coding downstream 440330 5563703 ~ 5638236 (+)
G75076 NA non-coding downstream 519516 5642889 ~ 5643101 (+)
LOC122352783 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558 other upstream 587864 4481267 ~ 4529002 (+)
LOC122352388 tln1,LOC107715875,LOC107670039,LOC107568645,LOC107702558,LOC107737170 other upstream 996419 4013034 ~ 4120447 (+)
cdc42se2 cdc42se2 other upstream 1422270 3669003 ~ 3694596 (+)
zgc:113274 LOC107715885,LOC107702590,LOC107720383,LOC107560406 other upstream 1448860 3663912 ~ 3668006 (+)
si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 other upstream 1512650 3596606 ~ 3604216 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other downstream 114906 5238279 ~ 5250137 (+)
G74965 NA other downstream 133465 5256838 ~ 5258823 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other downstream 375274 5498647 ~ 5500388 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other downstream 437278 5560651 ~ 5562085 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other downstream 937818 6061191 ~ 6089587 (+)

Expression


Co-expression Network