LOC122352369 (colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993)


Basic Information

Item Value
gene id LOC122352369
gene name colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5019307 ~ 5028513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110872
TGAAAGCATTTTCAGCAGAGCCCTTGCTTGTGTTTCCTACACATTACACGGGTGAACCTGGGTACATCAGTGACACAGAAACCTCCACTGTGTGGGACAATGAGAAAGTGCGCACAGACTGGGACAGGAAGCGCTCGGGTAAAACCCGGGAACAGGCTGAAATCAGCACAGAGGCCCAAAACTCAGATGTGCTCCAGTCTCCTCTGGACAGAACAGCTCGAGACGAACTATGAGAGAAATTGTTTTGGACACACCATTAGACTTGCTTCTGGGGGCAAAGTCCTCCGCTCTATAAGCACAATATATCTGACCAGAAGAGGCATTttcagaaattttttttttatgtttgcctgaaaaaaatatatttttgcgtTTAATCATTTGTCCCTTTTATTTGGAGATCAAATTTGCCGGACTGCGCTTTCTGATCTGTTCTTCACTGTATCCTGTGATTTAAAAACACCAGGAACATTCCTGAATATCTTCTTAGGAGAGAAGTTAGCAGGTATACTAAATGTAAAGTTTGTAAGGATGTACTTAAGGGCAAGTCTTGAAAGATTCATATAGAattagttcacctaaaaataaaaaaaaatgactgaaaatgtactcaccctcaggccatccgtgATATAGAGGACTTTGTTCTTCACCAGAGccgatttggagaaattcaACATTATTTCACTtactcaccaatggatcctctgcagtgaaggggtgccgtcaggatgagagtCCCAaagagctgattaaaaacatcaattaacatcttgtgaagttaAAAGCTTTgggtttgtaagaaacaaatgcattattatggcattttaactttaaatcatGACTTCTGGCCACAATATGTGTTCATAATCCATAACGTCCTCCAGCCTTGTCTAAAACATGAGAATGTGCACAGATtagtatgaataataatatgttggtggattttgattAGAGAGGACGACAGGAGATGGATGTTTTCACTGGAGGAAACTTTATTATAGGGCTTATGTATTATGTCCAGAAGTGCCCTAATAATAGATCTGTTTATATGAATTACATAACGCATTAACTGATAGACTCAAGTcgtgtggattattctgatgtttttatcagctgttttgactctcattctgacggcacccattcactacagaggatctACTGCTGAGCAAATGATACAACTCTAAATTCTTTTAATCCTTCTTAGgttaaaaaataagaagaaaacagGAGCTATGAAGGATTTTATCTTAAGGATATTTTGTTAATCTGTCCACTGATGTTTTTAGAACAGTTCAAtcaatctgaaagaaaaaaaacctgaaataatCACACgtaactaatatttttttatgcggTGTTCACAATCCAGAAATGAACGTAGTCGttcttaacaataataaaagagaCATGAAACATGTTGTTATTGTAAGGCATGAAGCATGTTATTTTAACTTGAAggatgttgttatttttaggcCTTGTGATACC
>XM_043249781.1
TTTAACGCGCTCGTCTTCCAAACTGCAGTGTTGTCAATGCAGGCAGATTTTGGTCGGCggaattatttaaactaaagtTACCCGTGTTAACTTTCTGCCTCTGGGTGTAACAGTGTGGTTTTGCTTCGAGGGCTCGTATGCCTGTTTGTAAAGAGCGCTCGCTGTACAATGCTCCGCTTCGTGTTGTCGGTGTCGGCGCTGTGGTCCTGTTTGATGAACTCCGGACCAGCTGAAGGATACTTCCACGAAGAGCGCTGGAGCCCGGAGTCTCCTATATTAGCTCCCCGAGTAATGATCGCTCTCATCTGCCGTAACGCCCAGCACTCGCTGCCGCATTTCCTCGGTACTATCGAGCGCCTCGATTACCCTAAAGACCGGATCGCGCTGtgGGTGGCAACTGACCACAATATTGACAACACTACTTACCTGCTGCGAGACTGGCTCATCAATGTACAGAAACTATATCATAATGTGGAGTGGAGGCCAAAGGAGGAACCAAGGAAATATTATGATGAGGGAGGACCGAAGGATTGGACGAATGAGCGCTACGCCTACATCATGAAACTGCGGCAGGCAGCGCTCGAGTCTGCACGTGAGATGTGGGCAGACTATCTGATGaTGATTGATTGTGATAACCTCCTGATCAACCGAGACGTCTTGTGGAAgctgataaaagaaaacaagacaattgTGGCACCAATGATGGAGTCTCGTGCTGCATATTCAAACTTCTGGTGTGGAATGACATCCCAGGGCTACTATAAACGAACGCCTGCCTACATCCCCATGCGCAAGCAAGTGCGTAGAGGTTGCTTTGCAGTTCCCATGGTGCACTCCACTTACCTGGTTGATCTGCGGAAAGAAGCCTCCAGAATGCTTGCTTTTCACCCGCCACATCCAGACTACACCTGGGCCTTTGACGACATTATAGTCTTTGCTTTTTCAGCCCGGATGGCAGAGGTacaaatgtttctttgtaaCAGGGAGATTTATGGGCACCTCCCAGTGCCTCTTCGAGCtcacagcaccatgcaggacgaAGCAGACAGCTTCATTCATACTTTGATGGAGGTCAATGTGCGAAATCCTCCAGTTGAGCCTTCCAGATACTTGCCCAAACCTGTCAAAAGACCTGACAAAATGGACTTTGATGAGGTGTTTATGATCAACCTGAAGCGGCGGGTCGACCGTCGTGAGCGCATGCTAAGGTCCCTGAGAGAGCAAGAAATTGCCTGCAAGATTATAGCAGCTGTTGATGGCAAAGCTATGAACGTCAGTGAGATCAATGCTATGGCAATCCACATGCTTCCCGGCTACAGTGACCCCTACCATGGCAGACCTCTGACAAGAGGAGAGCTGGGCTGCTTCCTGTCCCACTATAACATCTGGAAAGAGATTGCAGACAGAGGCCTGAAGACCTCGCTGGTGCTTGAAGATGATTTGCGGTTTGAGATTTTCTTCAAGCGCCGCCTGCAGAATCTGATGCGAGAGGTGGAGAGTAAGGGTCTGGACTGGGACCTCATttaTATTGGGAGGAAGAGGATGCAGGTGGACCGACCAGAGAAGGCAGTACCAAACATTCGCAACTTGGTGGAGGCGGACTATTCCTATTGGACCTTGGGCTACATGATGTCATTACAAGGAGCCAAAAAGCTCCTCAAAGCAGAACCACTCAGTAAAATGTTACCTGTGGACGAGTTCCTTCCTATTATGTTTAATAAGCATCCTGTATCGGATTACATGGATCAGTTTGAGCGAGAGGACCTGAAAGCATTTTCAGCAGAGCCCTTGCTTGTGTTTCCTACACATTACACGGGTGAACCTGGGTACATCAGTGACACAGAAACCTCCACTGTGTGGGACAATGAGAAAGTGCGCACAGACTGGGACAGGAAGCGCTCGGGTAAAACCCGGGAACAGGCTGAAATCAGCACAGAGGCCCAAAACTCAGATGTGCTCCAGTCTCCTCTGGACAGAACAGCTCGAGACGAACTATGAGAGAAATTGTTTTGGACACACCATTAGACTTGCTTCTGGGGGCAAAGTCCTCCGCTCTATAAGCACAATATATCTGACCAGAAGAGGCATTttcagaaattttttttttatgtttgcctgaaaaaaatatatttttgcgtTTAATCATTTGTCCCTTTTATTTGGAGATCAAATTTGCCGGACTGCGCTTTCTGATCTGTTCTTCACTGTATCCTGTGATTTAAAAACACCAGGAACATTCCTGAATATCTTCTTAGGAGAGAAGTTAGCAGGTATACTAAATGTAAAGTTTGTAAGGATGTACTTAAGGGCAAGTCTTGAAAGATTCATATAGAattagttcacctaaaaataaaaaaaaatgactgaaaatgtactcaccctcaggccatccgtgATATAGAGGACTTTGTTCTTCACCAGAGccgatttggagaaattcaACATTATTTCACTtactcaccaatggatcctctgcagtgaaggggtgccgtcaggatgagagtCCCAaagagctgattaaaaacatcaattaacatcttgtgaagttaAAAGCTTTgggtttgtaagaaacaaatgcattattatggcattttaactttaaatcatGACTTCTGGCCACAATATGTGTTCATAATCCATAACGTCCTCCAGCCTTGTCTAAAACATGAGAATGTGCACAGATtagtatgaataataatatgttggtggattttgattAGAGAGGACGACAGGAGATGGATGTTTTCACTGGAGGAAACTTTATTATAGGGCTTATGTATTATGTCCAGAAGTGCCCTAATAATAGATCTGTTTATATGAATTACATAACGCATTAACTGATAGACTCAAGTcgtgtggattattctgatgtttttatcagctgttttgactctcattctgacggcacccattcactacagaggatctACTGCTGAGCAAATGATACAACTCTAAATTCTTTTAATCCTTCTTAGgttaaaaaataagaagaaaacagGAGCTATGAAGGATTTTATCTTAAGGATATTTTGTTAATCTGTCCACTGATGTTTTTAGAACAGTTCAAtcaatctgaaagaaaaaaaacctgaaataatCACACgtaactaatatttttttatgcggTGTTCACAATCCAGAAATGAACGTAGTCGttcttaacaataataaaagagaCATGAAACATGTTGTTATTGTAAGGCATGAAGCATGTTATTTTAACTTGAAggatgttgttatttttaggcCTTGTGATACCATTAACCTCTTCGGTGGTG

Function

symbol description
colgalt1 Enables procollagen galactosyltransferase activity. Involved in positive regulation of collagen fibril organization. Located in endoplasmic reticulum lumen.

NR:

description
PREDICTED: procollagen galactosyltransferase 1-like

GO: NA

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU110872 False 1494 lncRNA 0.37 1 5019326 5020819
XM_043249781.1 True 3278 mRNA 0.44 13 5019307 5028513

Neighbor

gene id symbol gene type direction distance location
LOC122352400 gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163 coding downstream 2156 5000684 ~ 5017151 (-)
ubxn8 ubxn8,LOC107715867 coding downstream 108125 4905881 ~ 4911182 (-)
LOC122353167 wrn,LOC107715857,LOC107573262,LOC107758726 coding downstream 151728 4823464 ~ 4867579 (-)
LOC122352396 tln1,LOC107715875,LOC107670039 coding downstream 392266 4590288 ~ 4627041 (-)
nrg1 nrg1,LOC107575152,LOC107681480 coding downstream 611370 4358660 ~ 4407937 (-)
LOC122352563 pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 coding upstream 792 5029305 ~ 5031460 (-)
LOC122352871 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494,LOC107567230 coding upstream 21485 5049998 ~ 5053764 (-)
ywhah ywhah,LOC107562560,LOC107713377,LOC107688000,LOC107555530 coding upstream 219647 5248160 ~ 5252719 (-)
depdc5 LOC107713378,LOC107562559,LOC107686465,LOC107687976 coding upstream 224524 5253037 ~ 5274154 (-)
rab36 rab36,LOC107686502,LOC107562552,LOC107744178,LOC107555516,LOC108427235 coding upstream 245958 5274471 ~ 5279198 (-)
G74915 NA non-coding downstream 57074 4961570 ~ 4962233 (-)
G74869 NA non-coding downstream 91690 4927205 ~ 4927617 (-)
G74861 NA non-coding downstream 114838 4903977 ~ 4904469 (-)
G74858 ppp2cb,zgc:56064,LOC105021738,LOC107758729,LOC107728270 non-coding downstream 122220 4891594 ~ 4897087 (-)
G74846 NA non-coding downstream 178646 4839217 ~ 4840661 (-)
G74935 NA non-coding upstream 30001 5058514 ~ 5059679 (-)
G74936 LOC107567234,LOC107670466,LOC107757355,LOC107672456,LOC107711241,LOC107588012 non-coding upstream 32087 5060600 ~ 5061090 (-)
G74937 LOC107711241,LOC107588012,LOC107672456,LOC107757355 non-coding upstream 35357 5063870 ~ 5064146 (-)
G74943 NA non-coding upstream 51435 5079948 ~ 5080179 (-)
G74944 NA non-coding upstream 67115 5095628 ~ 5096028 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 1106565 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 1411519 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 1641523 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 2252112 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 2821878 2194085 ~ 2197429 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 1509609 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 1599912 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 2148811 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 2495681 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 2502348 7530861 ~ 7544090 (-)

Expression


Co-expression Network