CI01000000_11650257_11652811 (CDX1, CDX4)


Basic Information

Item Value
gene id CI01000000_11650257_11652811
gene name CDX1, CDX4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11649904 ~ 11654726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_11650257_11652811.mRNA
ACCATCACAAATCTGCCAAAAACTGTCCTACTTTTGCATAGCTCACTCGATCATTCAGACATGGGATGATTTATCATTCAGTTATAATAGTCTGTTTGTTAATCAAAAGTTTAGTGGACAAATGGCAAGCTAAAATTAAATTAGTATAGTCATCTGCAGTTCAGTTATATTACTTTATAAAGATGAGACATGGATTTATAGATTGCCTCCTTGAAAAATGTTGAAAATGATTGTGCAGTTCTTAAAAATAAAACAAATGAACTCATAGGTGAGAGACTTCATGGGATTATATATATATATATATATATATATATATACATACACACATGAACAACAGTGTTAATTTAAAAAAGTAATTTAATAGTTTTAAGTGGAGCATATATGTCACACCACAGGACATGTCAACTAGAAGTATTTAAAGTAAAATAACTACACGCATATATCTACATTTTAACCTAATTTAATGCTATCTATACTTGAATAATATTTAAGCCAACTGAAATATAAAAAGTATGGCCTACCACAGAATAGCCGAGTCTGCCTGTTACAAATAATTTTAATTGGTTTAGCACATTTAATGCATTTTTATATGTGCCTTTTTAAAATGAACGAATGTAAAATAAATTCTAGTTGTGCGTAAAACATTTGAAGAGATCTTTTTAATAACTCAAGTCAAAACACACTCATTTTAACATGAAATGTACTGTCCTTATGCCCTAACATCTGAGACAAGACAGTCAAGCCTGAACAAGCTACTGTCTGAATATGTTAATGATTAAAATACCCCAGAATCCTCGCAGTAAAATGAATTAACAACTCGTTAAATCTTTCGACTACATGGCGACACGCACGACACACTGTCGTCGCATGGGTACTGTAGGTGATACCTCACATTTCCATAAACCGGAATTAGCTGTGAAGTGTGACCCGAGAGTGTCATGGTGTGAGGGATGCGGAATGTGAAAAGTTCGCCTTACTTCAAGACACCTTCTCCCGCTTTGCACCTCTTTTACAAGAGTATCCTTTAACAAATACGCATGGACTCTGGAGGCGAGAAAGCGGCATGGGTACTATGCAGATGTGACGTTCCCATATCCACAGGTTTAGCTTCATTAGAGAGACAAGAGCAGTAAAACTTCAAGCGGCCATTAATCGCTGAATGATGCTGCAGCTTATTTCACTTTTATGGTTAACACTTTTTAACAATAAAATTAAGTTTATTATTATTATTGTTATTAGACCTACTGTTATACTTGCTTTATAAATACATTATAAATATAGGCTATAATAAAAAATAATTTATTAGTATATTAAAAAAATAAATACATCTGTAGCCAAATAGTTAATATCAAATATTATTATAAAAAAAGTCAAGTTCGTTATTTGCCTGTTTGACCTTTTTCGGTATTTGGAGTTTAAGTCGAACTTCACAAAACACGTTTCAAAATGGCTGCTTTGAGGATAGAAAATCACTTTGAACTGAATATTTTTTTCACAGAGTAATGTATTGATTCCTAAAGTCATATAGCCTAGAGTCAGTCTGAATATTGTTGAATATTACAGAAGGGGTATAAGTCTGAGGTGATGCGAAAATCTGGCGCTAGGGGAATCTGAGGGCTTGGTGGTGTTATTGGCTGGTCATTTGAATGCAAATCGAGAGGTTTTGAAGTCGTGGCTGACGTCAGGAGGGCTTGGTTATACCTTTGCCAGCACCACCTTGACAACAGAGTCACATCATGTTTGATTGAAGCACGTCAAGGACTACGTCGCGTGACCTGGAGATCATTTTGGACTACCACCCTTGAGATAAACAGTAAAAGTTTTGAGTCAGGCCTTGTTTTTAAAGTGATATTTGGTTTGATGCATGGCTGGCATGTTGCCTTAAAAAAGTTATTTTAGGGGTTTCTTTCGAATCATGTACGTTGGATACCTTTTGGATAAGGAGGGAAGCATGTATCACCAAGGAGCTGTGCGACGATCTGGCATCAGTCTTCCACCACAGAATTTTGTCTCCACATCTCAGTATTCAGATTTTACAGGATACCATCATGTGCCCAACATGGACACACACGCGCAGTCAGCGGGGGCATGGGGCGCTCCTTACGGCGCACCGAGAGAGGACTGGGGCGCCTACAGCCTCGGACCTCCAAACACCATTTCTGCACCTATGAGCAATTCATCCCCGGGACAAGTTTCCTACTGCTCGCCTGATTATAATGCCATGCACGGCCCTGGATCAGCAGTGCTGCCTCCACCACCTGAAAACATTTCTGTGGCCCAACTTTCCCCTGAGAGAGAAAGGCGTAATTCATACCAGTGGATGAGCAAAACCGTCCAGTCGTCATCAACCGGCAAAACAAGAACGAAGGAGAAATATCGAGTGGTATACACAGACCACCAGAGACTGGAGCTGGAGAAAGAGTTTCATTTTAATCGCTACATCACAATCAGAAGAAAATCCGAACTGGCAGTAAACCTCGGGCTTTCAGAGAGACAGGTAAAGATTTGGTTTCAGAACCGCAGAGCCAAGGAAAGGAAATTAATCAAAAAGAAAATGGGTCAGTCTGACGGGAGCGGAGGATCAGTCCACAGCGATCCAGGTTCTGTCAGTCCCCTACCGGTACCAGGGTCGCTGAGTCCATCAGATATACACGGTTCTCTGTACCCACCCCCAGGAATGAACGCCTTACCATCAATGAGGAACATACAGCAAGTTACTGTCACTCAGTGAACTCGAACTTGGAACGTCCAACTTTAACTGAGCACTCCAACACGCTGAAAGGACAGAACCGAAGCGGACCACTCACGTGGTCAAAAAGGATTAACTATTACGTGACGAGCATCAAGGCGCGTGTTGTGGATTACAACAGAAAAATCACGTCTTAAATGCAACGAAATGCTGGAGGCTCTTCAAATATTGTTTTAATAGAATAGTTTTTAAAATTAAGAAACAAAAAACATACAAAAACCTTGTTCGTCTGACCCAGAGACTAAATATTTTAATGGTTTGTTTGTGTTTGCTCGATTAAGATATAAATATCATTTTCTGTATGTGGTGAGTGTATCTAAATGTTTGTAAATAAA

Function

symbol description
cdx4 Enables DNA binding activity and chromatin binding activity. Acts upstream of or within several processes, including animal organ development; anterior/posterior pattern specification; and embryonic foregut morphogenesis. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; endoderm; germ ring; mesoderm; and presumptive mesoderm. Orthologous to human CDX4 (caudal type homeobox 4).
cdx1 Enables DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and methyl-CpG binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
Cdx4 protein

GO:

id name namespace
GO:0021903 rostrocaudal neural tube patterning biological_process

KEGG:

id description
K09312 CDX1_4; homeobox protein CDX1/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_11650257_11652811.mRNA True 3084 mRNA 0.39 3 11649904 11654726

Neighbor

gene id symbol gene type direction distance location
CI01000000_11644676_11648034 CHIC1 coding downstream 1870 11644046 ~ 11648034 (-)
CI01000000_11603826_11605350 SLC25A43 coding downstream 44554 11603800 ~ 11605350 (-)
CI01000000_11600258_11602519 SLC25A5.L, SLC25A6, SLC25A5, ANTS6 coding downstream 47324 11599982 ~ 11602580 (-)
CI01000000_11587766_11588330 NA coding downstream 61574 11587316 ~ 11588330 (-)
CI01000000_11584045_11586744 UBE2A, UBE2B, UBE2AL coding downstream 62922 11583971 ~ 11586982 (-)
CI01000000_11661528_11696310 NA coding upstream 6287 11661013 ~ 11696310 (-)
CI01000000_11721762_11759751 DLG3 coding upstream 66841 11721567 ~ 11759751 (-)
CI01000000_11788953_11800880 NA coding upstream 134177 11788903 ~ 11801346 (-)
CI01000000_11815586_11816295 NA coding upstream 160241 11814967 ~ 11817364 (-)
CI01000000_11821402_11828549 NA coding upstream 166597 11821323 ~ 11828549 (-)
G8255 NA non-coding downstream 28485 11621182 ~ 11621419 (-)
G8254 NA non-coding downstream 29087 11620559 ~ 11620817 (-)
G8253 NA non-coding downstream 29537 11620101 ~ 11620367 (-)
G8246 NA non-coding downstream 30159 11618854 ~ 11619745 (-)
G8251 NA non-coding downstream 34939 11614726 ~ 11614965 (-)
G8243 NA non-coding upstream 111230 11765956 ~ 11784772 (-)
CI01000000_11894953_11903178 UPF3B non-coding upstream 223794 11893917 ~ 11904097 (-)
G8278 NA non-coding upstream 242435 11897161 ~ 11897363 (-)
G8241 NA non-coding upstream 306269 11960995 ~ 11965822 (-)
G8245 NA non-coding upstream 331470 11986196 ~ 11995776 (-)
G8125 NA other downstream 608995 11040269 ~ 11040909 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other downstream 822309 10824324 ~ 10825464 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 1235391 10407395 ~ 10409950 (-)
G3931 NA other downstream 5246379 6157013 ~ 6403525 (-)
G3716 NA other downstream 5649135 6000407 ~ 6000769 (-)
G8699 NA other upstream 1630598 13272585 ~ 13311429 (-)
G9036 NA other upstream 2072074 13726800 ~ 13727090 (-)
G9602 NA other upstream 2686276 14341002 ~ 14346534 (-)
CI01000000_14200000_14436182 TENM2 other upstream 2730631 14200000 ~ 14436253 (-)
G10672 NA other upstream 4571561 16226287 ~ 16231126 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_007981 cdx4 coding NC_007125.7 CM002898.2 32961718 ~ 32965169 (-)