G75236 (LOC107678050)


Basic Information

Item Value
gene id G75236
gene name LOC107678050
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6578172 ~ 6579929 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111374
AGCGGGTGGGAACGCGGTCCTTTTTAACGGGATGAAACTTATAGAGCCAGAGTTCCTCAGGCTGGATCTCACGGCTGAATGGAGGAAGCTCCTCAGTCACGCTACAAGAGCATAAAAACAGCCTGAGAGAACAATCCTCATCTccacaaaacagacaaacacaggcACGGCTCAAGAGACCGGAAAATCTTCCCACGCAGCTGCGAGAGAACCTGTCGCTAGTATCACGGGGCGACGGCTCTTTAAAACCGAGCAAAAGACTAGCATAATAGGTTACGAAAGACGAGGTTACTGGTTAGATCGGTCAAACCCACAAATGCAGATGAAGGCCCGTAGCATCTATTCGATCGAGCGGAAAGATTACTTACAGAAAAACACCTAAAAGCAGCAGCCGCATAACAACTTCAGCAATAAAGCCATTATCAAAACTCTTCCTCATCTTTGGTCCTGGTTTGTCATCGACGACGCCCTCACCTAAAACTGAGCAACCGGAGCACCGCTAGAGAGCGTGTCGTGGGAGACAAACTGATTGGTAATCTGTGGGATGTTCTGCCACCAGCCGCGCGACCCTCCGCGACACATCTGTGATATTTGCTTACGAACATTTCCGCAAACACGACATCGCGCATCTTCCGTCTTTTGTCTGCAGTTCGGAGTTGAATACCGACCTTCGGATTCTTTCCTTTTCCGTCTAAACCGCCGCCTTGTCGGCTGTTGAGAGCAGCCACCGGAGCAGAATTTCGTGAGGTCTATCATATATATTTGACATGTCCAGCAGCAGCTAAGCGCCGTACTGAACAGCGATGAAGAGCTCTGACGAGGCAGTCCGTGCACTAACATAACACGTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111374 True 849 lncRNA 0.50 2 6578172 6579929

Neighbor

gene id symbol gene type direction distance location
r3hcc1 LOC107678027,LOC107553705,LOC107720724,LOC107687605,LOC107586124,LOC107705083 coding upstream 62245 6507050 ~ 6515927 (+)
golga7 golga7,LOC107553707,LOC107678053,LOC107586122,LOC107687624,LOC108276767 coding upstream 72087 6502318 ~ 6506085 (+)
ppp3ccb ppp3ccb,LOC107720725,LOC107678020,LOC107553709,LOC107586120,LOC107705087 coding upstream 131250 6422217 ~ 6446922 (+)
dmtn dmtn,LOC107586118,LOC107687659,LOC108440562,LOC108276891 coding upstream 172941 6385518 ~ 6405231 (+)
xpo7 xpo7,LOC107586117,LOC107678024,LOC107553697 coding upstream 182534 6363614 ~ 6395638 (+)
letm2 letm2,LOC107678006,LOC107687501,LOC107572715,LOC107586128,LOC107705077,LOC107720574 coding downstream 22448 6602377 ~ 6610875 (+)
si:dkey-81j8.6 LOC107720718,LOC107678005,LOC107572716,LOC107708650 coding downstream 34101 6614030 ~ 6624214 (+)
prnpb NA coding downstream 45503 6625432 ~ 6626598 (+)
LOC122352574 trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC108437819,LOC105905985,LOC106603261 coding downstream 483732 7063661 ~ 7076378 (+)
LOC122352576 etf1b,etf1,LOC107552075,LOC107678033,LOC108437808 coding downstream 496632 7076561 ~ 7082454 (+)
G75230 NA non-coding upstream 33927 6542088 ~ 6544245 (+)
G75192 NA non-coding upstream 373251 6179206 ~ 6204921 (+)
LOC122352660 NA non-coding upstream 387732 6186147 ~ 6190440 (+)
G75102 NA non-coding upstream 602614 5942274 ~ 5975558 (+)
G75097 NA non-coding upstream 670645 5907179 ~ 5907527 (+)
G75361 NA non-coding downstream 64107 6644036 ~ 6655910 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding downstream 155003 6734932 ~ 6759645 (+)
G75498 NA non-coding downstream 785488 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 818116 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 819499 7399428 ~ 7400033 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 106065 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 488585 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 1016087 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 1077784 5498647 ~ 5500388 (+)
G74965 NA other upstream 1319349 5256838 ~ 5258823 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other downstream 401563 6981492 ~ 6993621 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 562364 7142293 ~ 7150581 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 573657 7153586 ~ 7163223 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 617608 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 781055 7360984 ~ 7365331 (+)

Expression


Co-expression Network