LOC122352486 (LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209)


Basic Information

Item Value
gene id LOC122352486
gene name LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6454065 ~ 6472107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111380
GAGTCACCGAGAGCTCAGCCGCCGCCATCGAACAACGGGAGGTCTGCTCCAGCCCGTTTCCACCGCCATGTCTTCGTACTCGTCTTCAGACTCTCACCGGGTCAGCCCCGCCGTGAGCGGCGTCAAGTTCGACACGGCGCACCGCAAGAAAGCGTCGCCGAACATCTTCGAGAACGTCAACCAGGACGTCCTGGTGAAACTCTTCGAGAAAGCAGGAGACCTGAAGGCGGCGGAGAGAGCCAGGAGCATCCTCGCGCTGCACCAGGACCCCGAGGGCATCTCCAAGGCGCTCATGGCTCTTCAGCAGGACAAGAAAGACAAATTTATGCTCATTACCGGACTGACGCGCCAGTCGATACGGTTCCGATGAGAGGTTTTCGTTGGGGAGCTGTGCGAGATGCGTGCACGGAGAAAGAAACCCGGAGCCTGGCGCTCCTCGAGGCTTTGTGCTGAACTTGTGACTTACAGAGCCATGCTGGCGTGCTGAGAAAATACAGAGAGGGGAGGCTAAACTGATCCAGGGCGGGAAAGATGAGCTTGAAGACACCTGAGCGTCGATGCTTTTTGACACCAAGAAGAGAACGTTTGAAATATGGCCTGATGGCACGGGTGAAATTAGCTTGTGAAGAGATTCAATATCAGCAGTGTCGTTTCAAAATGA
>XM_043249895.1
TGTCAAGAGGCAATTTCTTGTAGAAAGTTTGTTAGAAAACATCTGAACTAAAATGGACCGAAGGGTGTCATTGTTTGAGGTCGTTTATAATGAGCCCGTTACTCATTAATGAAGTTCGCGTCTGCGTCAGAGCGCTGTCCCTCAACGCGTCCCGCTGAACGCGACGCGGGTAAAGTTGGGCGTTCACTTTCCGTCCGCGTGACATCACCTCGAAAGGGAATTCTCACGCTCGGCAGGTCCCCTATAAAACCGGCTCTTATCTCCAACGCCGGAGTCACCGAGAGCTCAGCCGCCGCCATCGAACAACGGGAGGTCTGCTCCAGCCCGTTTCCACCGCCATGTCTTCGTACTCGTCTTCAGACTCTCACCGGGTCAGCCCCGCCGTGAGCGGCGTCAAGTTCGACACGGCGCACCGCAAGAAAGCGTCGCCGAACATCTTCGAGAACGTCAACCAGGACGTCCTGGTGAAACTCTTCGAGAAAGCAGGAGACCTGAAGGCGGCGGAGAGAGCCAGGAGCATCCTCGCGCTGCACCAGGACCCCGAGGGCATCTCCAAGGCGCTCATGGCTCTTCAGCAGGACAAGAAAGACAAATTTATGCTCATTACCGGACTGACGCGCCAGTCGATACGGTTCCGATGAGAGGTTTTCGTTGGGGAGCTGTGCGAGATGCGTGCACGGAGAAAGAAACCCGGAGCCTGGCGCTCCTCGAGGCTTTGTGCTGAACTTGTGACTTACAGAGCCATGCTGGCGTGCTGAGAAAATACAGAGAGGGGAGGCTAAACTGATCCAGGGCGGGAAAGATGAGCTTGAAGACACCTGAGCGTCGATGCTTTTTGACACCAAGAAGAGAACGTTTGAAATATGGCCTGATGGCACGGGTGAAATTAGCTTGTGAAGAGATTCAATATCAGCAGTGTCGTTTTGCCATGTTACAGTATGcttggaaaaaatttttaataaaattgttttgataATCCAA

Function

NR:

description
PREDICTED: protein C8orf4 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111380 False 661 TUCP 0.56 2 6454336 6472107
XM_043249895.1 True 981 mRNA 0.53 1 6454065 6455045

Neighbor

gene id symbol gene type direction distance location
ppp3ccb ppp3ccb,LOC107720725,LOC107678020,LOC107553709,LOC107586120,LOC107705087 coding upstream 7143 6422217 ~ 6446922 (+)
dmtn dmtn,LOC107586118,LOC107687659,LOC108440562,LOC108276891 coding upstream 48834 6385518 ~ 6405231 (+)
xpo7 xpo7,LOC107586117,LOC107678024,LOC107553697 coding upstream 58427 6363614 ~ 6395638 (+)
LOC122352409 LOC107696015,LOC107743582,LOC107721879,LOC107687770 coding upstream 176941 6275720 ~ 6277124 (+)
LOC122352406 NA coding upstream 298336 6154560 ~ 6155729 (+)
golga7 golga7,LOC107553707,LOC107678053,LOC107586122,LOC107687624,LOC108276767 coding downstream 30211 6502318 ~ 6506085 (+)
r3hcc1 LOC107678027,LOC107553705,LOC107720724,LOC107687605,LOC107586124,LOC107705083 coding downstream 34943 6507050 ~ 6515927 (+)
letm2 letm2,LOC107678006,LOC107687501,LOC107572715,LOC107586128,LOC107705077,LOC107720574 coding downstream 130270 6602377 ~ 6610875 (+)
si:dkey-81j8.6 LOC107720718,LOC107678005,LOC107572716,LOC107708650 coding downstream 141923 6614030 ~ 6624214 (+)
prnpb NA coding downstream 153325 6625432 ~ 6626598 (+)
G75192 NA non-coding upstream 249144 6179206 ~ 6204921 (+)
LOC122352660 NA non-coding upstream 263625 6186147 ~ 6190440 (+)
G75102 NA non-coding upstream 478507 5942274 ~ 5975558 (+)
G75097 NA non-coding upstream 546538 5907179 ~ 5907527 (+)
G75083 NA non-coding upstream 732038 5663157 ~ 5722027 (+)
G75230 NA non-coding downstream 69981 6542088 ~ 6544245 (+)
G75236 LOC107678050 non-coding downstream 106065 6578172 ~ 6579929 (+)
G75361 NA non-coding downstream 171929 6644036 ~ 6655910 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding downstream 262825 6734932 ~ 6759645 (+)
G75498 NA non-coding downstream 893310 7365417 ~ 7366605 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 364478 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 891980 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 953677 5498647 ~ 5500388 (+)
G74965 NA other upstream 1195242 5256838 ~ 5258823 (+)
LOC122352567 ywhah,LOC107562560,LOC107744159,LOC107713377,LOC107555530,LOC107688000 other upstream 1203928 5238279 ~ 5250137 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other downstream 509385 6981492 ~ 6993621 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other downstream 670186 7142293 ~ 7150581 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 681479 7153586 ~ 7163223 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 725430 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 888877 7360984 ~ 7365331 (+)

Expression


Co-expression Network