sprn2 (LOC107578968,LOC107720715)


Basic Information

Item Value
gene id sprn2
gene name LOC107578968,LOC107720715
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 6628425 ~ 6631188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111552
GTGGTTGTTTACAGCAAAGAGTAGCTTGTCACAGTAAGGTTGAGCAGTTCAAGCGGTGAATAGAAGCCAGCGATCAGCACTATCACCAGGGAGCGCCAGTCGTGATGGGTAATCAGAAGATCCTGATCGTTTGGGTGTGGATGTTACTGTTGGCGTCGTTGCATCCCTGGGCGCACTGCAAGCGTGGAGGAGGTTTCGGTGGCAGGAGTAAGGGAGCGGGTCTGCCAGACAGAGCTCCTCCTTCCCAGAGCAAAGGCAGACAGGGCCTTAAGCTGGCAGGTGCTGCAGCCGCGGGGGCTCTCGGTGGAGCGGCCATCGGCTATGGGCTGGGCTCTTTGGGAAGGCCGAGGTATGGCTACGGCTACGATGGCTCCTCAGAGGGGGACAGGCGCTACGATGGACCGGGATACAATCGCACGGACTCGAGATATTACAGGAACAAAGGCAGCTCCGAACACGTGACCAGCGTCCTCATAATACTCGGAACGGTCACACACGTCTTCATGTGGGGATGAGTTCAGGGTTTGAGGCAGACGAGATGCAAAGAgggtttattttggatgcaatcaTTTTCGTTGGTAAAGTGTTTGATAGAGAGAAACCTAACGTACACCAGCAATATATTTGGAGAAATATGAAACTTATTAGACCGCACAAACTACTAGGTTACACAAACTACGGGTCAAATGTTAAAAGTGAAACTTAAAACGAAATTACATTGGCCTTGCAtacattttaacacacacacacacaccttgtgtGAATTACACTTATATACTCTGCACTTTGTAGTTCAGTTTGCTGTCTCTGTGAAcgtttgacagaaaaaaaaaatcaataaaacactgaCCATCGTTTAGTGATCTCACAGAACTTACCGGTATTTTGAGACAAATATGTGAATTATGCTTTACCGCCATCTTTGTACTTATCTGTTTGTATGGCAATTTAAGCTACTTAGCTACTTCTGAAAGCGACTAATGATGTATGATGATGTGCATATCCTATAATATATGTCCCAAATTGGTAGACCTGGACTgatttaaatatcagttttactatttaacatattcaaatattttagctATACGTGATGAATgtaaaattctatttaattcaTGTGTTGCTATACCACACAATTCTGCAATTATATGTCACTGTGGATTTTAATTTAGGATTTAATTTATTGGAGTCAAAAGTCATTCAATGCAACTGAATGACTTTTGACTATAGCTTTAAATAGCAATACAATTATTTGATGCAAACTCTTTTAGGGTTGGGCAAAATGAAAAGCAGCCTGACATAAAAGTGCTTTTGCTGTTCTTTTCGTTCCAGTGATATCATTTAATACGCTACTTTTGGTTTCAGGGTTTGAtttgtattttggttttaatgtcactgtgttCTCTTTGCTGTTTTCAgagtgaaatgaataaataattgaca
>TU111553
GTGGTTGTTTACAGCAAAGAGTAGCTTGTCACAGTAAGGTTGAGCAGTTCAAGCGGTGAATAGAAGCCAGCGATCAGCACTATCACCAGGGAGCGCCAGTCGTGATGGGTAATCAGAAGATCCTGATCGTTTGGGTGTGGATGTTACTGTTGGCGTCGTTGCATCCCTGGGCGCACTGCAAGCGTGGAGGAGGTTTCGGTGGCAGGAGTAAGGGAGCGGGTCTGCCAGACAGAGCTCCTCCTTCCCAGAGCAAAGGCAGACAGGGCCTTAAGCTGGCAGGTGCTGCAGCCGCGGGGGCTCTCGGTGGAGCGGCCATCGGCTATGGGCTGGGCTCTTTGGGAAGGCCGAGGTATGGCTACGGCTACGATGGCTCCTCAGAGGGGGACAGGCGCTACGATGGACCGGGATACAATCGCACGGACTCGAGATATTACAGGAACAAAGGCAGCTCCGAACACGTGACCAGCGTCCTCATAATACTCGGAACGGTCACACACGTCTTCATGTGGGGATGAGTTCAGGGTTTGAGGCAGACGAGATGCAAAGAgggtttattttggatgcaatcaTTTTCGTTGGTAAAGTGTTTGATAGAGAGAAACCTAACGTACACCAGCAATATATTTGGAGAAATATGAAACTTATTAGACCGCACAAACTACTAGGTTACACAAACTACGGGTCAAATGTTAAAAGTGAAACTTAAAACGAAATTACATTGGCCTTGCAtacattttaacacacacacacacaccttgtgtGAATTACACTTATATACTCTGCACTTTGTAGTTCAGTTTGCTGTCTCTGTGAAcgtttgacagaaaaaaaaaatcaataaaacactgaCCATCGTTTAGTGATCTCACAGAACTTACCGGTATTTTGAGACAAATATGTGAATTATGCTTTACCGCCATCTTTGTACTTATCTGTTTGTATGGCAATTTAAGCTACTTAGCTACTTCTGAAAGCGACTAATGATGTATGATGATGTGCATATCCTATAATATATGTCCCAAATTGGTAGACCTGGACTgatttaaatatcagttttactatttaacatattcaaatattttagctATACGTGATGAATgtaaaattctatttaattcaTGTGTTGCTATACCACACAATTCTGCAATTATATGTCACTGTGGATTTTAATTTAGGATTTAATTTATTGGAGTCAAAAGTCATTCAATGCAACTGAATGACTTTTGACTATAGCTTTAAATAGCAATACAATTATTTGATGCAAACTCTTTTAGGGTTGGGCAAAATGAAAAGCAGCCTGACATAAAAGTGCTTTTGCTGTTCTTTTCGTTCCAGTGATATCATTTAATACGCTACTTTTGGTTTCAGGGTTTGAtttgtattttggttttaatgtcactgtgttCTCTTTGCTGTTTTCAgagtgaaatgaataaataattgacaGCTTA
>XM_043250754.1
CTGCCTGTCGAGTGAGTGACAGATTCATAAAGTGGTTGTTTACAGCAAAGAGTAGCTTGTCACAGTAAGGTTGAGCAGTTCAAGCGGTGAATAGAAGCCAGCGATCAGCACTATCACCAGGGAGCGCCAGTCGTGATGGGTAATCAGAAGATCCTGATCGTTTGGGTGTGGATGTTACTGTTGGCGTCGTTGCATCCCTGGGCGCACTGCAAGCGTGGAGGAGGTTTCGGTGGCAGGAGTAAGGGAGCGGGTCTGCCAGACAGAGCTCCTCCTTCCCAGAGCAAAGGCAGACAGGGCCTTAAGCTGGCAGGTGCTGCAGCCGCGGGGGCTCTCGGTGGAGCGGCCATCGGCTATGGGCTGGGCTCTTTGGGAAGGCCGAGGTATGGCTACGGCTACGATGGCTCCTCAGAGGGGGACAGGCGCTACGATGGACCGGGATACAATCGCACGGACTCGAGATATTACAGGAACAAAGGCAGCTCCGAACACGTGACCAGCGTCCTCATAATACTCGGAACGGTCACACACGTCTTCATGTGGGGATGAGTTCAGGGTTTGAGGCAGACGAGATGCAAAGAgggtttattttggatgcaatcaTTTTCGTTGGTAAAGTGTTTGATAGAGAGAAACCTAACGTACACCAGCAATATATTTGGAGAAATATGAAACTTATTAGACCGCACAAACTACTAGGTTACACAAACTACGGGTCAAATGTTAAAAGTGAAACTTAAAACGAAATTACATTGGCCTTGCAtacattttaacacacacacacacaccttgtgtGAATTACACTTATATACTCTGCACTTTGTAGTTCAGTTTGCTGTCTCTGTGAAcgtttgacagaaaaaaaaaatcaataaaacactgaCCATCGTTTAGTGATCTCACAGAACTTACCGGTATTTTGAGACAAATATGTGAATTATGCTTTACCGCCATCTTTGTACTTATCTGTTTGTATGGCAATTTAAGCTACTTAGCTACTTCTGAAAGCGACTAATGATGTATGATGATGTGCATATCCTATAATATATGTCCCAAATTGGTAGACCTGGACTgatttaaatatcagttttactatttaacatattcaaatattttagctATACGTGATGAATgtaaaattctatttaattcaTGTGTTGCTATACCACACAATTCTGCAATTATATGTCACTGTGGATTTTAATTTAGGATTTAATTTATTGGAGTCAAAAGTCATTCAATGCAACTGAATGACTTTTGACTATAGCTTTAAATAGCAATACAATTATTTGATGCAAACTCTTTTAGGGTTGGGCAAAATGAAAAGCAGCCTGACATAAAAGTGCTTTTGCTGTTCTTTTCGTTCCAGTGATATCATTTAATACGCTACTTTTGGTTTCAGGGTTTGAtttgtattttggttttaatgtcactgtgttCTCTTTGCTGTTTTCAgagtgaaatgaataaataattgacaGCTTA

Function

NR:

description
major prion protein-like

GO:

id name namespace
GO:0009986 cell surface cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111552 False 1446 TUCP 0.42 2 6628430 6631157
TU111553 False 1451 TUCP 0.42 2 6628425 6631157
XM_043250754.1 True 1482 mRNA 0.42 2 6628425 6631188

Neighbor

gene id symbol gene type direction distance location
nsd3 whsc1l1,LOC107720716,LOC107687514,LOC107705078,LOC107678004 coding downstream 27034 6580621 ~ 6601391 (-)
plpp5 plpp5,LOC107720719,LOC107678050,LOC107553701,LOC107705081,LOC107586127,LOC107687571 coding downstream 48477 6575421 ~ 6579948 (-)
ddhd2 ddhd2,LOC107553702,LOC107678022,LOC107586212,LOC107687560 coding downstream 53701 6567280 ~ 6574724 (-)
tacc1 LOC107678021,LOC107553704,LOC107720721,LOC107687537 coding downstream 64992 6543568 ~ 6563433 (-)
loxl2a loxl2a,LOC107720722,LOC107678026,LOC107553706,LOC107705082,LOC107687596 coding downstream 90430 6515997 ~ 6537995 (-)
rassf2b LOC107720572,LOC107708653,LOC107687490,LOC107586133,LOC107678048 coding upstream 493 6631681 ~ 6638407 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding upstream 9805 6640993 ~ 6662838 (-)
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding upstream 103732 6734920 ~ 6806411 (-)
avd LOC107552052,LOC107677992 coding upstream 344013 6975201 ~ 6977380 (-)
LOC122353004 LOC107552052,LOC107677992 coding upstream 426523 7057711 ~ 7059761 (-)
G75294 NA non-coding downstream 245984 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 275541 6352535 ~ 6352884 (-)
G75209 NA non-coding downstream 351095 6272225 ~ 6277330 (-)
G75191 NA non-coding downstream 472649 6148920 ~ 6155776 (-)
G75190 NA non-coding downstream 479916 6145846 ~ 6148509 (-)
G75366 NA non-coding upstream 14736 6645924 ~ 6648670 (-)
G75429 NA non-coding upstream 398805 7029993 ~ 7082458 (-)
G75433 NA non-coding upstream 447367 7078555 ~ 7079365 (-)
G75445 NA non-coding upstream 476570 7107758 ~ 7231920 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding upstream 496400 7127588 ~ 7148979 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 87452 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 1599912 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 2715683 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 3020637 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 3250641 3337339 ~ 3377784 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 546136 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 893006 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 899673 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 1219833 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 1229034 7860222 ~ 7860303 (-)

Expression


Co-expression Network