G75422 (pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396)


Basic Information

Item Value
gene id G75422
gene name pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7142293 ~ 7150581 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111650
ATTCTGTTATAACAAGCATCTGTTTGATTGTTTGCATTCTTATTAGCTTAATCGTGTGTCGATGCAGTGTAAGATCAGCATATTACTtagtattttattgttgtttttcagcattGAATTACTTTGAGTGTTGACGTCgttgtttcatttattattttgctacTGGGTTTGCAGACAGATAATTCCTGCATAATATGGTCCAGGCACATGGTGTCACTGCAGACCGTCAGTTTAATATCTGCACTATACTCtgcagcctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctatccgcTGCTGAGACGTGATGTTGCCGTTTCGTCTCTCGTTTCCTgcatgctaaaaaataaatactagttTCTCCAgcgtttatttttgtttttactgctaTTAAACCAGTTGTGAATGATGGCCTTTGTGGGATATTTCGAGTGTGGattgatatttttgatttttctgcTGGATTCTGCGTTTGCTCAGATCGTCTATTCCGTACCGGAAGAGGTAAATAAAGGGACAGTTGTTGGGAATATAGCGAAAGATCTGAACATCAACGTTCACGACCTTGAATCTCGTATGTTTGAGATTGTGTCTGGATTAAATAAGAAGTATTTTAACGTGAATCTAAAAACGGGCGTGCTGTTTGTTAATGAAAGAATTGACCGGGAGGAGTTATGTCCTTCGAGTCAGAAATGTTCTCTGAATATAGAAGCCCTTGCTAAAAATCCTCATCATCTTTACAGAGTGGAGATTAAGATTTTGGATATAAACGATAATGCGCCACATTTTCCTGTTAAAGTATTTGCTGTGAATATTAGTGAAAACGCAAGTCCAGGAGAAAGATTTCCTCTCCCTGTAGCAGAGGACTCTGATGTTGGCAGTAATTCGCTGAAAGAGTACAAACTGAGTCCGAATGAACATTTCAGTCTAGATACACAGAGTGAAGACCAGAGTGTGTCTGCAGAGTTAGTGCTGAACAAGGCTTTGGATCGAGAGAAACAAGCCACGATTAAGTTAATTCTCACTGGAGTAGATGGAGGAAAGCCACCTAAATCTG

Function

symbol description
pcdh1a6 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: histone-lysine N-methyltransferase PRDM9-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111650 True 1091 TUCP 0.40 2 7142293 7150581

Neighbor

gene id symbol gene type direction distance location
LOC122353133 pcdh1a3,pcdh1a4,LOC107742396,LOC107586180,LOC107552012 coding upstream 1747 7138473 ~ 7140546 (+)
LOC122352413 LOC107720567,LOC107552013,LOC107736721,LOC107688341 coding upstream 4867 7134474 ~ 7137426 (+)
LOC122352559 pcdh1a3,pcdh1a4,pcdh1a6,LOC107586180,LOC107742396,LOC107677970,LOC107742395,LOC107678002 coding upstream 8365 7130736 ~ 7133928 (+)
LOC122352572 LOC107552014,LOC107720569,LOC107720570 coding upstream 11701 7127604 ~ 7130592 (+)
LOC122352453 LOC107720709,LOC107552072,LOC107678037,LOC107687397,LOC107586142,LOC100006797 coding upstream 17034 7118582 ~ 7125259 (+)
LOC122353116 pcdh1a6,pcdh1a3,pcdh1a4,LOC107678002,LOC107742395,LOC107677970,LOC107742396,LOC107742371,LOC107552069,LOC107687386,LOC107586137,LOC108437806 coding downstream 12691 7163272 ~ 7196404 (+)
LOC122353123 pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304 coding downstream 53576 7204157 ~ 7207530 (+)
LOC122353134 pcdh1g9,LOC107720701,LOC107688268,LOC108276785 coding downstream 89742 7240323 ~ 7242055 (+)
LOC122353132 pcdh1gb9,LOC107586138,LOC107677986,LOC107687322 coding downstream 124724 7275305 ~ 7277811 (+)
LOC122353131 pcdh1gb9,LOC107552066 coding downstream 128278 7278859 ~ 7281632 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 382648 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 486383 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 562364 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 598048 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 951853 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 214836 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 247464 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 248847 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 251552 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 336894 7487475 ~ 7488567 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 148672 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 670186 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 1052706 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 1580208 5560651 ~ 5562085 (+)
ccl19b LOC107744181,LOC107677997,LOC107567444,LOC107555521,LOC107713300,LOC107688602,LOC107713257 other upstream 1641905 5498647 ~ 5500388 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other downstream 3005 7153586 ~ 7163223 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 46956 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 210403 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 667229 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 710665 7861246 ~ 7861379 (+)

Expression


Co-expression Network