LOC122352414 (pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564)


Basic Information

Item Value
gene id LOC122352414
gene name pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7153586 ~ 7163223 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111651
CTGAAGGCGTGTTAATAATCAAGGCTTATAGTAGCTTCTGCGTCGTGATGTCGGGTTGCGTCGAGAAAGGTCTGtttagctgttttatttatttttacacgaAATAATCTCGGGACGTTCTGCTGCACAATCATGGATGTTACTGAATCTTACGGCTTCTGGATccttttatttctgtctttatgGAAATCTTCGCTCGGCCAGATTGTCTATTCCGTCTCCGAGGAGGTAAATAAGGGAACTGTGATCGGGAATATAGCGAAAGACCTGAAGATCAGTGCTCAGGAACTAGAATCACGCGTGTTTCAGATTATGCCTGGATCTAATGCGAAGTATTTTGatgtaaatgtgaaaacagGCTCACTGTTTGTCAAAGACAGGATTGATCGTGAAGAGTTGTGTGGCAGTAATCAgaaatgtgctttaaatgtaGAGGCTCTTGCTCAGAATCCTCACAGACTTTACAGGCTTGAAATTATAATATTGGATGTGAATGACAATGCTCCAGTTTTTCCGGACAGCATGTGTGTTGTCAATGTTACGGAGAATG
>TU111652
CTGAAGGCGTGTTAATAATCAAGGCTTATAGTAGCTTCTGCGTCGTGATGTCGGGTTGCGTCGAGAAAGGTCTGTTTAgccgtttttattatttttacgcGAAATAATCTCGGGACATTCTGCTGCACAATCATGGATGTTACTAAATCTTACGGCTTCTGGATccttttatttctgtctttatgGAAATCTTCGCTCGGCCAGATTGTCTATTCCGTCTCCGAGGAGGTAAATAAGGGAACTGTGATCGGGAATATAGCGAAAGACCTGAAGATCAGTGCTCAGGAACTAGAATCACGCGTGTTTCAGATTATGCCTGGATCTAATGCGAAGTATTTTGatgtaaatgtgaaaacagGCTCACTGTTTGTCAAAGACAGGATTGATCGTGAAGAGTTGTGTGGCAGTAATCAgaaatgtgctttaaatgtaGAGGCTCTTGCTCAGAATCCTCACAGACTTTACAGGCTTGAAATTATAATATTGGATGTGAATGACAATGCTCCAGTTTTTCCGGACAGCATGTGTGTTGTCAATGTTACGGAGAATG
>XM_043249829.1
ATGGATGTTACTGAATCTTACGGCTTCTGGATccttttatttctgtctttatgGAAATCTTCGCTCGGCCAGATTGTCTATTCCGTCTCCGAGGAGGTAAATAAGGGAACTGTGATCGGGAATATAGCGAAAGACCTGAAGATCAGTGCTCAGGAACTAGAATCACGCGTGTTTCAGATTATGCCTGGATCTAATGCGAAGTATTTTGatgtaaatgtgaaaacagGCTCACTGTTTGTCAAAGACAGGATTGATCGTGAAGAGTTGTGTGGCAGTAATCAgaaatgtgctttaaatgtaGAGGCTCTTGCTCAGAATCCTCACAGACTTTACAGGCTTGAAATTATAATATTGGATGTGAATGACAATGCTCCAGTTTTTCCGGACAGCATGTGTGTTGTCAATGTTACGGAGAATGCAAACGAGGGAGATAGATTTATTCTCCCAACTGCAAAAGATTCAGATGTTGGCAGTAATTCTCTAAAAGACTATAAACTTagttcaaatgaatatttttctgTTGATGTTCATATCGGGCAAAAGAGTATATCTGCTGAATTAGTGCTACAGAAAGCTttagacagagagaaacaagCTGTTATTCACTTAATACTCACCGCTATTGACGGAGGAAAACCTCCCAAATCTGGAACACTGAGTATTGTTGTTAATATCATGGATGTAAACGATAATAAACCTATTTTCAGCAAACCTTTGTACAAAGttaaagtgaaagaaaacacatcAAGTGGAAccaaaattatttctgtttCTGCCAGTGATTTGGATGAAGGCATCAGCAGTGAAATTCAGTATTCATTTCATGGAAATACGCATGAAAGTAACCTGTTTAGTATAGATTCTAACTCAGGGGAAATTGTTGTTCAAGGTCAGATTGATTACGAAGAATACCCTGCCATTGAACTGCGTGTTCAGGCGAGAGATAAAGGCGTTCCTCCTAAAAGTACTCACTGTAAAGTTTTAATAGAAGTTGTGGATGAAAATGACAACGTGCCTGAAATAGTTACGACTCCTCTGTTGGAAAGTGTGAAAGAAGACACAAAGTCAGGAACAGCAGTTGCTTTAGTCACAGTGTCTGATAAAGATGGAGGTAAAAATGGCATTGTACACTGCTCTCTGAaagactcttttcctttcaaactGGAGACATCATATAACAATCATTATTCTCTAGTGGTAGATGGACCTCTGGACAGAGAGAGTGTTTCTCTGTATAACATCACAATTACAGCTGCAGATGAAGGAAGTCCGTCTCTTTCCAGCAGCACTGTTATAACTGTACATATCTCTGATGTTAATGACAATGCTCCACATTTCCCAGCTCCCGTTATTAACGCTTTTCTACGTGAGAACGGTCAAGCTGGAGGTCTGGTGACAAAAGTGTCCGCTGATGATTCAGACACTGGTGAAAACGCACAACTTTCATATTCACTGTTAGACAGTTCCAGCTCCAGTGTTCCTGTAACAACACTGATAAATATAAACTCTTTAAGTGGAGAAATATTCAGCTTGCAGTCATTTAATCacgaagaaaaacaaagagttaatagtgagaacatTCCCTACTCTGCTGAAGCGGGATACTTTGTAGCCAAGATCAGATCTGTTGATGCTGACTCTGGATATAACGCACTTCTGTCTTATCATCTAACTGAACCCAAAGGAACCAATCTGTTCCGCATCGGAAGCAGTTCTGGAGAAATAAGGACTAAGAGACGAATGAGTGACAACGACTTAAAAACTCACCCACTTCTCATCACAGTGTCTGATAATGGAGAGCCATCACTCTCAGCGACTATGTCCATGGATGTTGTGGTTGTTGAGAGTCTGGATGACATAAAGACATCCTTCCGAGAAGTTCCTGTTAAAGAGGAGAGTTTTTCAGATCTCAATCTGTATCTGCTCGTCTCTATCGTCTCAGTATCAGTCATCTTTTTACTGAGTCTGGTGGGTTTGATAGCAGCTAAATGCTACAGGACAGACAGCAGTTTCAGCAGGTACAGCGCTCCAGTGATCAGCACACATCCAGACGGAAGCTGGTCCTTCTCTAAATCCACTCAACAGTACGACGTGTGTTTTAGTTCAGACACGATAAAGAGTGATGTAGTAGTTTTCCCCTCGCCGTTTCCTCCAGCAGACGCGGAACTGATCAGCATTAATGGAGAAGATACTTTTACGCGCACGCAAACTCTTCCTACCTCAGAGAAGGTAAGACCACTATAG

Function

symbol description
pcdh1a3 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.
pcdh1a4 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.
zgc:123181 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: cadherin-23-like

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111651 False 550 TUCP 0.41 2 7153586 7161263
TU111652 False 550 TUCP 0.41 2 7153586 7161263
XM_043249829.1 True 2244 mRNA 0.41 2 7160846 7163223

Neighbor

gene id symbol gene type direction distance location
LOC122353121 pcdh1a6,pcdh1a3,pcdh1a4,LOC107677970,LOC107742396,LOC107742395,LOC107678002 coding upstream 1125 7149532 ~ 7152461 (+)
LOC122353129 pcdh1a6,pcdh1a3,pcdh1a4,LOC107677970,LOC107742396,LOC107742395,LOC107678002 coding upstream 8437 7142303 ~ 7145149 (+)
LOC122353133 pcdh1a3,pcdh1a4,LOC107742396,LOC107586180,LOC107552012 coding upstream 13040 7138473 ~ 7140546 (+)
LOC122352413 LOC107720567,LOC107552013,LOC107736721,LOC107688341 coding upstream 16160 7134474 ~ 7137426 (+)
LOC122352559 pcdh1a3,pcdh1a4,pcdh1a6,LOC107586180,LOC107742396,LOC107677970,LOC107742395,LOC107678002 coding upstream 19658 7130736 ~ 7133928 (+)
LOC122353116 pcdh1a6,pcdh1a3,pcdh1a4,LOC107678002,LOC107742395,LOC107677970,LOC107742396,LOC107742371,LOC107552069,LOC107687386,LOC107586137,LOC108437806 coding downstream 49 7163272 ~ 7196404 (+)
LOC122353123 pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304 coding downstream 40934 7204157 ~ 7207530 (+)
LOC122353134 pcdh1g9,LOC107720701,LOC107688268,LOC108276785 coding downstream 77100 7240323 ~ 7242055 (+)
LOC122353132 pcdh1gb9,LOC107586138,LOC107677986,LOC107687322 coding downstream 112082 7275305 ~ 7277811 (+)
LOC122353131 pcdh1gb9,LOC107552066 coding downstream 115636 7278859 ~ 7281632 (+)
G75371 LOC107564544,LOC107678039,LOC107708655,LOC107586135,LOC107720713,LOC108437809,LOC105905969 non-coding upstream 393941 6734932 ~ 6759645 (+)
G75361 NA non-coding upstream 497676 6644036 ~ 6655910 (+)
G75236 LOC107678050 non-coding upstream 573657 6578172 ~ 6579929 (+)
G75230 NA non-coding upstream 609341 6542088 ~ 6544245 (+)
LOC122352660 NA non-coding upstream 963146 6186147 ~ 6190440 (+)
G75498 NA non-coding downstream 202194 7365417 ~ 7366605 (+)
G75513 NA non-coding downstream 234822 7398045 ~ 7399363 (+)
G75514 NA non-coding downstream 236205 7399428 ~ 7400033 (+)
G75516 NA non-coding downstream 238910 7402133 ~ 7408121 (+)
G75502 NA non-coding downstream 324252 7487475 ~ 7488567 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 3005 7142293 ~ 7150581 (+)
trpc7a trpc7a,LOC107677994,LOC107720592,LOC107552051,LOC105905985,LOC108437819,LOC106603261 other upstream 159965 6981492 ~ 6993621 (+)
LOC122352486 LOC107720590,LOC107677990,LOC107553711,LOC107705075,LOC107586209 other upstream 681479 6454065 ~ 6472107 (+)
lrrtm4l1 lrrtm4l1,LOC107730422,LOC107553720,LOC107687748,LOC107720738,LOC107561403 other upstream 1063999 6061191 ~ 6089587 (+)
G75062 LOC107744182,LOC107678054,LOC107567441,LOC107713390,LOC107687817 other upstream 1591501 5560651 ~ 5562085 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other downstream 34314 7197537 ~ 7340195 (+)
G75496 LOC107720595,LOC107677995 other downstream 197761 7360984 ~ 7365331 (+)
si:ch211-237l4.6 NA other downstream 654587 7817810 ~ 7822518 (+)
LOC122353465 NA other downstream 698023 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 698370 7861593 ~ 7861674 (+)

Expression


Co-expression Network