G75446 (pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304)


Basic Information

Item Value
gene id G75446
gene name pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7204180 ~ 7211461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111685
AGTAGAtttaggggcggggttaggtgttagtaatttaaaaaaatttaaacgaaGTGGCAACTCGACCTTGTATGAATTGCCGTGAGATTGGGCTGGAAATACTATAATTAGAAATAGTCGAGAAGAGTTAAACTTCTCTTacctcattttcatttcctgtAAAGTCAAGTGTTATCATGCTCGAGCCAAACTGAAAATCGTGTTCCTTTTTCAGAGTACAGCCAGCAGgaagtgtgttttcattatacgaGTTCACAAACTTAAAGTCACTGGTGCGCGAGCCTGTGGTTAGATACGCGTCATAATTGTAAGAGCTGCGGAGAGTTCCTGCTCCATCCACCTCTGCATAGTTAGGAGGAAGATAGGCGCTGGGAACAGCTACTGCTCCATCAAACAACAGTCTGGGCTTTCTCCTGTGACAAAACTTCACTGCCACGATCAGTATGATGAACGTCAGGAAGAAGGTGGACACAGAAACTAATGCAATGATCAAGTAAGACGTCAGTTTAGAGTTGTCCTCATAAGTCATATCTTTAAGTTCAGGAACTTCAGAAAGATTGTCAGAAATCAGTAAATTTACAGCACAGGTTGTAGACAGAGAGGGCTGTCCGTTATCCTTCACTGAAATAACGAGGTTCTGCTTCATATTGTCAGATTCAGAAATGTCTCGCTGTGTTTTGATCTCTCCACTATGAAGACCAATGGAGAAAAGTCCAGGATCAGGAGATTTGACAATCTGATAGGACAGCCATGCATTCTGTCCAGAGTCAGCATCTACAGCGATCACCTTGGACAccagagagccagagagagtCGCTTTAGGGACCATTTCAGTCATTAGAGACTTTCCATCAGGAACAGGGTATAATATCTGTGGAGAGTTATCGTTCTCATCTGTTATGAAGACTTTGACAGTCACGTTACTGCTGAGCGCTGGAGATCCATTGTCTCTGGCAACGACTTTGACAGTCAAGTTTCTGAACTGTTCATAATCAAATGATCTCACACCGTGAATCACCCCTGTATCTCCATTAATAGATAGAAAGGAGGACACCGGGACCCCATTGACTTCACTGGGAACCAGAGAATACAGTACAGTCCCGTTCTGTCTCCAGTCTGGGTCATTTGCACTGACAGAACAAACAGAAGTGCCTGGTTTGTTATTTTCACTTATATAAGCACTGTAGGACTGCTGCTCAAATACAGGAGGATTGTCATTCACGTCTgagacaaataaatgaattgtcaTGGAGGTGGATAATGGTGGAGATCCCCCATCTGTGGCTGTGATGGTAATGTTATAATCAGATTCTTTCTCTCGGTCTAGAGCTTTTGTAGTTACCAGAGAGAAATAGTTTTTAACAGATGGGTTCAGTTTGAAAGGAACATTTTGCTGAACAGAACAACGAATCTGACGATTTTCTCCTGAATCTTTGTCCTGAACATTAATGATTCCCACCTCAGTACCTGGATCAGAGTTTTCAGATACTGGATTATTCAAAGATTTCAGGATGATTCTAGGTGGATTATCATTAACATCAGTTATATCTATCATCATTTTAGCAGTTGATGCCAATCCAGATGCATCTTTAGCTTGAATTCCCATTTCatactttttgtctttttcataaTCAAGTTCTCCGATCACAACAATCTGCCCTGATTccttattaatagaaaataatttagcaGTTTTATCTGACATTCTACTAAATTCATAGGTCACTTCCCCGTTTGGACCTTCATCAGCATCAGTTGCACTCACTCTGATTATTTCTGTTCCTGAAGGTGTATTTTCAGCCAGAGTGACTTTATAAACAGACTCACTAAACACCGGGACATTATCATTAGCATCGAGAACAGTGATGTGTATGACAGCAGTGCCAGACCTCTGCGGTGAACCACCATCAGTGGCTGTGAGTATCATATCTATCTCCTTCTGCTGCTCGCGATCCAACTCCTTTTCCAACACGAGTTCAGCGTATTTCCCTCCATCTGCACTATCgtgaacatttaaaacaaaatgtctatttctctgcagtgaatagcTGTTAATGGCATTTTGTCCAATATCAGTGTCATGCGCCTCATCTAAACGAAATCGCTGACCTTTAATTGCTGATTCTCTGATTTCAATTTTTATATACTCATTTGCAAATCGCGGTGTATTGTCATTTATATCTTGAATTTGAAGAATTATACGATGCACTTCAAGAGGGTTTTCCAGGACGAGCTCATAACTGAGAATGCAGGGAATTTGTGATCCACAAAGCTCCTCTCGATCTATTGTCTCTGTCACGATTAAATCACCAGAATTCAGATTAATATCACAGTACCGTTTGCTGCTGTCCTCTGTTTCTATCCGAGCTTTACGAGCAGATAATTGCTTCACTTCCATCCTCAGATCCTTCGCTATATTTCCAATCACATACTGGCGCTTCGTTTCTTCCGGAATATTGTAGCTCAAATCATCGCAGACGGTTCTCAGAGCAAAGAGAATAAGAGCAGCGAAACACGTTAAAAAAGGAGCTGAAAATAATCCGTGTTCCATTGTTAAAGGTTTAATCTTTCAATCATCAACAGTAAATGTCTGCTGAACGGAGGATTTTCTAAGCTATCTCAGCCTCGACGGACGCTTACTCCATTTTGTGCGGATATTCTTACAGACAGATCTCATGCTGCATACATTAAGTGTGGGAGGAGAGACACAGCTGTCTTGGTGAACAGCGACTCTGTGAGTTTTTTTGGGCTCATTGcatcattaatgcatttattgaaaagaCAGAGGATTAATCATTCGAAGTGTGATGTTGGTCAACGCATCGATTTACATCAATATAAgttcagataaaaataaattaaaaactgccACACATTCAGAGATGAAGAACAACAGACAGTCCTGGCGCTGTCCGGGTTCGTGGTGCTGAAACGGGATGAGCTCAGAGATATTCAACCAGACCATTGTAACGTAAATTTCGATTCCTATTGAACAAAAGAGTAAATCggttttaaaagaaagttacgcttattattttattcagcacgTCAACCATTTTTTCGTAAGTTTTAACGTCCAAGTAGAATAAATACCGGACTCACGGTGACGATTCTTGTCAAA

Function

symbol description
pcdh1g2 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain.
pcdh1g3 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain.

NR:

description
PREDICTED: protocadherin beta-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111685 True 3121 lncRNA 0.41 2 7204180 7211461

Neighbor

gene id symbol gene type direction distance location
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding downstream 102100 7094645 ~ 7102080 (-)
LOC122353004 LOC107552052,LOC107677992 coding downstream 144419 7057711 ~ 7059761 (-)
avd LOC107552052,LOC107677992 coding downstream 226800 6975201 ~ 6977380 (-)
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding downstream 397769 6734920 ~ 6806411 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding downstream 541342 6640993 ~ 6662838 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding upstream 178709 7390170 ~ 7414303 (-)
LOC122352681 NA coding upstream 203932 7415393 ~ 7425751 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding upstream 216375 7427836 ~ 7441824 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding upstream 279100 7490561 ~ 7496338 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding upstream 300263 7511724 ~ 7514061 (-)
G75465 pcdh1a4,pcdh1a3,LOC107678002,LOC107742395,LOC107742371,LOC107552069,LOC107677970,LOC107742396,LOC107586180,LOC107552012,LOC107720566 non-coding downstream 33562 7158031 ~ 7170618 (-)
G75463 pcdh1a4,pcdh1a3,pcdh1a6,LOC107742396,LOC107586180,LOC107677970 non-coding downstream 44720 7154148 ~ 7159460 (-)
G75460 pcdh1a3,zgc:123181,LOC107742396,LOC107552012,LOC107586180,LOC107720564,LOC107720566 non-coding downstream 50083 7145981 ~ 7154097 (-)
G75459 pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002 non-coding downstream 55201 7127588 ~ 7148979 (-)
G75429 NA non-coding downstream 121722 7029993 ~ 7082458 (-)
G75450 LOC107586188,LOC107688311,LOC107552007,LOC107688294,LOC107677966,LOC107552071 non-coding upstream 1409 7212870 ~ 7221928 (-)
G75475 pcdh1gb2,pcdh1g11,LOC107720703,LOC107677965,LOC107586192,LOC107742390 non-coding upstream 21912 7233373 ~ 7270706 (-)
G75477 pcdh1g9,LOC107720701,LOC107688268,LOC107552005,LOC108276785 non-coding upstream 35092 7246553 ~ 7259394 (-)
G75478 pcdh1g9,pcdh1gb2,LOC108191536 non-coding upstream 36978 7248439 ~ 7255949 (-)
G75487 pcdh1gb9,LOC107552066 non-coding upstream 67291 7278752 ~ 7285469 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 23359 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 572992 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 663207 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2175667 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3291438 3905614 ~ 3912742 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 312733 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 319400 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 639560 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 648761 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 650824 7862285 ~ 7862366 (-)

Expression


Co-expression Network