CI01000000_11721762_11759751 (DLG3)


Basic Information

Item Value
gene id CI01000000_11721762_11759751
gene name DLG3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 11721567 ~ 11759751 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_11721762_11759751.mRNA
GCAAACCCTCCCCCCATCATTGTGAACGCAGACTCACTGGATGCAGGCCCTTATGTGAATGGGAGTGATGGCATGTATAAATATGAAGAAATCATTCTGGAGAGGGGCAACTCTGGCCTTGGGTTCAGCATTGCTGGAGGTGTGGATAATCCACACATTCCTGATGATCCAGGAATCTTCATCACAAAGATCATCCCAGGAGGTGCCGCTGCCATGGATGGGAGACTAGGGGTAAATGACTGTGTTCTGCGGGTGAATGATGTGGACGTGTCAGAGGTTGTGCACAGCAAGGCAGTAGAGGCTTTGAAGGAGGCCGGCCCAGTGGTCAGGTTGCTGGTACGCAGAAGACAGGCTCCTCCGGAGACCATTTTGGAGGTCAACCTACTCAAAGGGCCGAAAGGTCTTGGCTTCAGTATTGCTGGAGGTATAGGCAACCAGCACATCCCGGGTGACAACAGTATCTACATCACAAAGATCATCGAGGGTGGGGCGGCACAGAAAGATGGACGACTGCAGACAGGCGATCGCCTACTAGCTGTGAATAATATTATACTTCAGGATGTGCGTCATGAGGAGGCTGTGGCCGCCCTGAAGAATACTTCAGACATGGTCTATCTGAAAGTGGCCAAGCCGGGACCAGTACATCTCAACGACATGTACGCCCCACCAGACTACTCCAGCACCTTTCCCACCATGGTGGACAACCACGTTGGACACAACTCCAGCATGGCCTACATGGGCGGCATGGAGCCTAAACCAGTGTACCAGCCACCCCAGGTTACCCCCTCGAGGTACTCCCCAGTCCCACGGCACATGCTGGGGGAGGAGGACTTCACCAGGGCCGAGCCCATTTACAGTGCCATCCACAAACCTCATGGGGACACCAGCCCTCCCTCCCCCCATCTGTGCAGCAGGGGGTCTGGGGACGTGGGTTGCAGCCCCGCCCCGCCTGCTCTGTGTCAAAGCCTGGTCCCGTACACCGGCAGGGAGCCGCGGAAGATTCTGCTACACAAGGGTTCCACAGGTTTGGGATTCAACATTGTGGGCGGGGAGGACGGAGAGGGCATCTTCGTGTCTTTCATCTTGGCAGGAGGGCCAGCCGACCTGAGCGGAGAGCTGAGGAGAGGAGACCGCATCCTGTCGGTGAATGGTGTAAACCTGCGCAATGCTACCCATGAGCAGGCGGCTGCTGCACTGAAGAGGGCTGGACAGACGGTGACCATCATTGCCCAGTACAGACCAGAAGAATACAGTCGTTTTGAGTCCAAGATCCACGACTTGAGGGAGCAAATGATGAACAGCAGCATGAGCTCTGGCTCCGGCTCCCTCCGCACCAGTGAGAAACGCTCCCTCTACGTCAGTGGGCTTATAATTAGTGTTTCCTTGGAGAGTGGTGGATTTACCTGTCTGACAAGGGCACTTTTTGACTATGACAGGACCAGGGACAGTTGCCTCCCTAGCCAGGGTCTGAGTTTTTCCTATGGGGACATCCTGCATGTCATCAATGCCTCCGATGATGAGTGGTGGCAGGCACGGCTGGTTACACCCCATGGGGAGAGTGAGCAAATTGGGGTCATACCAAGCAAGAAAAGGGTGGAAAAGAAAGAGCGTGCACGGTTAAAAACAGTCAAGTTCCACGCAAGGACGGGCATGATTGAGTCTAACAGGCCAGTCAAAGTGAAGCGCAAAAAAAGCTTCAACCTATCACGCAAGTTCCCGTTTTACAAGAGCAAGGAGAATATAGTGCAGGAGTTGGTGGAGACCGAACAGTGCTTGACATCCAACACCAGTGACAGCGAAAGCAGCTCCAAGGGTCAGGAAGACACAATTCTATCATATGAGCCAGTGATTCGACAGGAGATTCATTACACAAGGCCTGTGATTATCCTGGGTCCAATGAAGGACAGAGTAAACGATGACTTGATCTCGGAATTTCCTCACAAGTTTGGATCCTGCGTTCCACATACAACTCGTCCTCGGCGAGAGAATGAGATGGACGGGCAGGACTACCACTTTGTGGCTTCAAGGGAGCAAATGGAGAAGGACATTCAGGACAACAAATTTATTGAGGCCGGCCAGTTCAATGAGAATCTGTATGGGACCAGCATCCTGTCTGTTCGGGCAGTGGCTGAAAGGGGGAAACACTGTATCCTGGATGTGTCTGGGAATGCCATAAAGCGACTGCAGCAAGCACAGCTCTATCCAATCGCCATTTTCATCAAGCCAAAATCTGTGGAGGCCCTAATGGAAATGAATAAGAGGCAGACATATGAGCAAGCCAATAAAGTCTTTGATAAGGCAATGAAGCTTGAACAAGAGTTTGGAGAATATTTCACAGGGAAACCTGAGCGAATCCTTTCATGCGTTTCGGACGGACTTGATGATGATGATGATGAGAACGTCTTACCGAAGCGAGAACGGGGAGTCGGAGATGGAGACACGAGCGGAAACCTTGTATATGTTCATTCGGTTTCATTGAAAAAGACATTCGCGAATGCTGTGCGAGGTTTTCTACGAGGACTAGATACAGATCAAGCCTGCTGATGGTACCGTCACTGCTCCTGTTTATAAGCGGAGAAACTTCAAAACTGATGGTGATCTTCAGTACTCACAAACCAGCTCGCTTTATTCGATCGGCTGCCTGGCCATTTGTATGGCGACACGGTCGGAGACAGAACAAAATGGAAAACGGTGTTCGAGTCTATACATTTATATTACTGACATCACGTGGAAAATAAA

Function

symbol description
dlg3 Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to be active in basolateral plasma membrane and cell junction. Is expressed in central nervous system; immature eye; notochord; sensory system; and ventral mesoderm. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 90. Orthologous to human DLG3 (discs large MAGUK scaffold protein 3).

GO:

id name namespace
GO:0097120 receptor localization to synapse biological_process

KEGG:

id description
K12075 DLG2; discs large protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_11721762_11759751.mRNA True 2739 mRNA 0.52 23 11721567 11759751

Neighbor

gene id symbol gene type direction distance location
CI01000000_11661528_11696310 NA coding downstream 25257 11661013 ~ 11696310 (-)
CI01000000_11650257_11652811 CDX1, CDX4 coding downstream 66841 11649904 ~ 11654726 (-)
CI01000000_11644676_11648034 CHIC1 coding downstream 73533 11644046 ~ 11648034 (-)
CI01000000_11603826_11605350 SLC25A43 coding downstream 116217 11603800 ~ 11605350 (-)
CI01000000_11600258_11602519 SLC25A5.L, SLC25A6, SLC25A5, ANTS6 coding downstream 118987 11599982 ~ 11602580 (-)
CI01000000_11788953_11800880 NA coding upstream 29152 11788903 ~ 11801346 (-)
CI01000000_11815586_11816295 NA coding upstream 55216 11814967 ~ 11817364 (-)
CI01000000_11821402_11828549 NA coding upstream 61572 11821323 ~ 11828549 (-)
CI01000000_11847606_11852314 STARD14 coding upstream 86887 11846638 ~ 11852727 (-)
CI01000000_11855933_11866514 RAB6C, RAB6A, RAB41 coding upstream 95859 11855610 ~ 11866885 (-)
G8255 NA non-coding downstream 100148 11621182 ~ 11621419 (-)
G8254 NA non-coding downstream 100750 11620559 ~ 11620817 (-)
G8253 NA non-coding downstream 101200 11620101 ~ 11620367 (-)
G8246 NA non-coding downstream 101822 11618854 ~ 11619745 (-)
G8251 NA non-coding downstream 106602 11614726 ~ 11614965 (-)
G8243 NA non-coding upstream 6205 11765956 ~ 11784772 (-)
CI01000000_11894953_11903178 UPF3B non-coding upstream 118769 11893917 ~ 11904097 (-)
G8278 NA non-coding upstream 137410 11897161 ~ 11897363 (-)
G8241 NA non-coding upstream 201244 11960995 ~ 11965822 (-)
G8245 NA non-coding upstream 226445 11986196 ~ 11995776 (-)
G8125 NA other downstream 680658 11040269 ~ 11040909 (-)
CI01000000_10824957_10825464 MMGT1, TMM32 other downstream 893972 10824324 ~ 10825464 (-)
CI01000000_10407402_10409508 UBL3B, UBL3.S, UBL3 other downstream 1307054 10407395 ~ 10409950 (-)
G3931 NA other downstream 5318042 6157013 ~ 6403525 (-)
G3716 NA other downstream 5720798 6000407 ~ 6000769 (-)
G8699 NA other upstream 1525573 13272585 ~ 13311429 (-)
G9036 NA other upstream 1967049 13726800 ~ 13727090 (-)
G9602 NA other upstream 2581251 14341002 ~ 14346534 (-)
CI01000000_14200000_14436182 TENM2 other upstream 2625606 14200000 ~ 14436253 (-)
G10672 NA other upstream 4466536 16226287 ~ 16231126 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021319 dlg3 coding CM030130.1 CM030130.1 14341482 ~ 14378877 (-)