G75459 (pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002)


Basic Information

Item Value
gene id G75459
gene name pcdh1a3,pcdh1a4,pcdh1a6,LOC107552014,LOC107720569,LOC107720570,LOC107742396,LOC107586180,LOC107677970,LOC107742394,LOC107742395,LOC107678002
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7127588 ~ 7148979 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111703
CGAAGCAAGTTACAATGTCTTACCTTCTCTGAGGTAGGAAGAGTTTGCGTGCGCGTAAAAGTATCTTCTCCATTAATGCTGATCAGTTCCGCGTCTGCTGGAGGAAACGGCGAGGGGAAAACTACTACATCACTCTTTATCGTGTCTGAACTAAAACACACGTCGTACTGTTGAGTGGATTTAGAGAAGGACCAGCTTCCGTCTGGATGTGTGCTGATCACTGGAGCGCTGTACCTGCTGAAACTGCTGTCTGTCCTGTAGCATTTAGCTGCTATCAAACCCACCAGACTCAGTAAAAAGATGACTGATACTGAGACGATAGAGACGAGCAGATACAGATTGAGATCTGAAAAACTCTCCTCTTTAACAGGAACTTCTCGGAAGGATGTCTTTATGTCATCCAGACTCTCAACAACCACAACATCCATGGACATAGTCGCTGAGAGTGATGGCTCTCCATTATCAGACACTGTGATGAGAAGTGGGTGAGTTTTTAAGTCGTTGTCACTCATTCGTCTCTTAGTCCTTATTTCTCCAGAACTGCTTCCGATGCGGAACAGATTGGTTCCTTTGGGTTCAGTTAGATGATAAGACAGAAGTGCGTTATATCCAGAGTCAGCATCAACAGATCTGATCTTGGCTACAAAGTATCCCGCTTCAGCAGAGTAGGGAatgttctcactattaactgaTCCAGGTTCAGAATAAGGAGCTAAAATAACCGGACTGTTGTCGTTCTCGTCcagaataaacacatttacagtcgAGTTACTGCTCAGAGGAGGAACACCAGAGTCTGTCGCCATAACTTGAAACTGTAAGGTTTTTACCTGCTCATAATTGAAAGTCTGCATGCTGTATATCTCACCGGTCACAGAGTTTATGCTGATTGCTGTGGATAGCGGGACACTGGGACTATCGATTAATGAATAAGTTACCTGAGCGTTCTCTCCATAGTCACAATCTTGTGCAGAAGCAGTCGCTATCTGACCACCAGCTGGACTATTTTCCTTCACGTAAACATTAATAGCAGAATCTTGAAATCGAGGCGCGTTGTCGTTCACATCAGAAACATGAATCGCTATAACTGTGTTTTTCGATAAAGGCGGGGTTCCTTCATCTGTAGCCGTAACTGAAATATTATACTGTGCAGTTTCTTCTCTGTCCAGAGTCCCGCTTAAAACAAGCGAGTAATATTTCCCTTGTGATGACTGTAGTGTAAAAGGAGAGTTTGGGTGGATAGAACAATGCACTTTTCCGTTTTTACCCCCATCTTTATCCTGGACCGTGATGAAGGCTAACACAGTGCCTTGTTTTGCATCTTCACTGACATTATCCAGCAGCGACGAGAGCGTAATGTCGGGTGCGTTGTCGTTCATGTCAAGTATCTCCACGAGGACTTTACAATGAGATGCAAGCGGACTCTGGCCTCGGTCCCAGGCCTCCACGCGGATCTCGTACGCATTGATGTCCTCATAATCCAAAGTGCCAATGACTGTTATCTCCCCCGTGGTGTTGTTGACCGCGAACTTATCTGCAATTCCTTTCTGGCCTTGTTTGAATTTATACACGACCTCACCGTTAAGACCCTCGTCAGGATCAGTGGCGTTAAGCTTCGTTATAGTAGTGCCAATAGGCGCGTTTTCTAAGACTTGAGTTTTGTACACGGTCTTGGAAAATACCGGTGCGTTGTCATTTGCATCTAGAATATTAACAATAACACTCGTTGTGCTAGACCTTGAAGGTTTTCCTCCATCCATAGCGGTTAAAACCAACTGTATTGTAGactgtctctctctatccaaCGCCTTTTGCAACACCAGTTCAGGAGAAGGACCACTTTCTGCATCTGCGTGTACCTCTAGGCTGAAAAACGGATTGTTAGACACTTTATATGCTGTCACTGAGTTGCTTCCCACGTCGGGATCTTCTGCGCTTAGCAATGGAAACCTGGTTCCCGGTAACGTTAGCTCAGAAATTTGGATATACTGAGCTTTTTCGGCAAAATGAGGGTAGTTGTCGTTGATATCCGATATTTTTACTTCTATGCTGTAAACATTCAGAGGATTATTAACAATGGCCTCCAGGTTTACCGTGCAAGGGTGAGTATTGGGGCACAGCTTTTCTCTGTCCACCGTCTCTTTCACATAGAGAACCCCAGTTTTTAAATTCACGGCGAAATTGCTCTCAGATGAAGCTGAAACGATCCTCAGTCCTCGGGAGTCTAAATCATCCACCTTCAGGTTTAAATCCTTGGCTAGGTTTCCGACGAACGTTCCCGGACTCACCTCCTCGGACGCCGTATAAACAATCTGCCGCGACAACGCATCCCTCGCCAAACAGGAGAGCAGGGACGGAAGGAAAATCCATGCGGAGGTTGCTTGTTTGAACGACGCCATGAGCAGTTGTTCTCAAACAGCGATCTGGTGAAGGTTTATCCAAGGAGAAAAAAACGAACCCTCGCCGTCTTCAGGCTCCAGACAACATCTATCCCCAGCATGCAGCTCTTCAGCGTTT
>TU111704
AATTAATTTCGAACACCTTATAACAAAAAACGAAACGAAAAAAGCTTATAACGAAAAAAGTAATTATCCAACATAAATTTTCAATTATCTTACCTTCTCTGAGGTAGGAAGAGTTTGCGTGCGCGTAAAAGTATCTTCTCCATTAATGCTGATCAGGTCCGCGTCTGCTGGAGGAAACGGCGAGGGGAAAACTACTACATCACTCTTTATCGTGTCTGAACTAAAACACACGTCGTACTGTTGAGTGGATTTAGAGAAGGACCAGCTTCCGTCTGGATGTGTGCTGATCACTGGAGCGCTGTACCTGCTGAAACTGCTGTCTGTCCTGTAGCATTTAGCTGCTATCAAACCCACCAGACTCAGTAAAAAGATGACTGATACTGAGACGATAGAGACGAGCAGATACAGATTGAGATCTGAAAAACTCTCCTCTTTAACAGGAACTTCTCGGAAGGAGGTCTTTATGTCATCCAGACTCTCAACAACCACAACATCCATGGACATAGTCGCTGAGAGTGATGGCTCTCCATTATCAGACACTGTGATGAGAAGTGGGTGAGTTTTTAAGTCGTTGTCACTCATTCGTCTCTTAGTCCTTATTTCTCCAGAACTGCTTCCGATGCGGAACAGATTGGTTCCTTTGGGTTCAGTTAGATGATAAGACAGAAGTGCGTTATATCCAGAGTCAGCATCAACAGATCTGATCTTGGCTACAAAGTATCCCGCTTCAGCAGAGTAGGGAatgttctcactattaactgaTCCAGGTTCAGAATAAGGAGCTAAAATAACCGGACTGTTGTCGTTCTCGTCcagaataaacacatttacagtcgAGTTACTGCTCAGAGGAGGAACACCAGAGTCTGTGGCCATAACTTGAAACTGGAATCTCTTTGTTTCTTCGTGATTAAATGACTGCAAGCTGAATATTTCTCCACTCAAAGAGTTTATATTTATCAGTGTTGTTACAGGAACACTGGAGCTGGAACTGTCTAACAGTGAATATGAAAGTTGTGCGTTTTCACCAGTGTCTGAATCATCAGCGGACACTTTTGTCACCAGACCTCCAGCTTGACCGTTCTCACGTAGAAAAGCGTTAATAACGGGAGCTGGGAAATGTGGAGCATTGTCATTAACATCAGAGATATGTACAGTTATAACAGTGCTGCTGGAAAGAGACGGACTTCCTTCATCTGCAGCTGTAATTGTGATGTTATACAGAGAAACACTCTCTCTGTCCAGAGGTCCATCCACCACTAGAGAATAATGATTGTTATATGATGTCTCCagtttgaaaggaaaagagtcttTCAGAGAGCAGTGTACAATGCCATTTTTACCTCCATCTTTATCAGACACTGTGACTAAAGCAACTGCTGTTCCTGACTTTGTGTCTTCTTTCACACTTTCCAACAGAGGAGTCACATTTATTTCTGGTGCATTATCATTTTCATCcataatttctattaaaattttacaatgTGTACTCCTTGGTGGGCCACCTTTATCTTTCGCTTGAACTCGTAACTCAATAGCTGGATTCTCCTCGTAATCTATTTGTCCTTTTACAACAATGTCTCCAGTCTCAGAGATAATGTCAAAcagatctttcttttttccatgaccaacaaatgaatacataatTTCACGGTTTATGCCCTCATCCAAATCAGAAGCAAACACAGAGATAACTTTTGTACCAGCAGCAACATTTTCCTTTAGTTTGACTTTATAAAGAGGTTGACTGAACACTGGATTATTGTCATTAACATCCATGACgttgataataatatttacagtcCCAGATTTAGGTGGCTTTCCTCCATCTACTCCAGTGAGAATTAACTTAATCGTGGCTTGTTTCTCTCGATCTAAAGCCTTGTTCAGCACTAACTCTGCAGACACACTCTGGTCTTCACTCTGTGTATCTAGACTGAAATGTTCATTCGGACTCAGTTTGTACTCTTTCAGCGAATTACTGCCAACATCAGAGTCCTCTGCTACAGGGAGAGGAAATCTTTCTCCTGGACTGGCTGTTTCagttatatttatagtaaatactTTAACAGGAAAATGTGGCACATTATCATTTATATCCAAAATCTTAATCTCCACTCTGTAAAGATGATGAGGATTCTTGGCAAGGGCTTCTATATTCAGAGAACATTTCTGACTCGAAGGACATAACTCCTCCCGGTCAATTCTTTCATTAACAAACAGCACGCCCGTTTTTAGATTCACGTTAAAATACTTCTTATTTGATCCAGATACAATCTCAAACATACGAGATTCAAGGTCGTGAACGTTGATGTTCAGATCTTTCGCTATATTCCCAACAACTGTCCCTTTATTTACCTCTTCCGGTACGGAATAGACGATCTGAGCAAACGCAGAATCCAgcagaaaaatcaaaaatatcaatCCACACTCGAAATATCCCACAAAGGCCATCATTCACAACTGGTTTAAtagcagtaaaaacaaaaataaacgcTGGAGAaactagtatttattttttagcatgcAGGAAACGAGAGACGAAACGGCAACATCACGTCTCAGCAgcggatagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggctgcaGAGTATAGTGCAGATATTAAACTGACGGTCTGCAGTGACACCATGTGCCTGGACCATATTATGCAGGAATTATCTGTCTGCAAACCCAgtagcaaaataataaatgaaacaacGACGTCAACACTCAAAGTAATTCaatgctgaaaaacaacaataaaatactaAGTAATATGCTGATCTTACACTGCATCGACACACGATTAAGCTAATAAGAATGCAAACAATCAAACAGATGCTTGTTATAACAGAATCTACTCTGTAAAATGCATCGGGCGATTAAAAAGGTGTTAATATAAAGTTGAATGCCAGATTTGTTTTACTGCTACTACTATTACTgctactgttatttttattattattattattattattatcatcatcatcatcattaagaTCTATTTCCGGCTTCGTTTACGCATACTGCTTTTTAATTGCGCTATGCCTGTCTCCGAATAAAGGCTCTAAAAATGCGTAGTTCAACTTATTTTCAAATCTTGAAAACACAACGCTCGAAATGCctgttaattaaatacaacataGTCTACGCGTTTCAAACCATCCACCACGAATGGCCCGGGCTGTGTTTCCCGATAACGCAGTCTTTTAGCGCGCTACGAAAAC
>TU111705
AATTAATTTCGAACACCTTATAACAAAAAACGAAACGAAAAAAGCTTATAACGAAAAAAGTAATTATCCAACATAAATTTTCAATTATCTTACCTTCTCTGAGGTAGGAAGAGTTTGCGTGCGCGTAAAAGTATCTTCTCCATTAATGCTGATCAGGTCCGCGTCTGCTGGAGGAAACGGCGAGGGGAAAACTACTACATCACTCTTTATCGTGTCTGAACTAAAACACACGTCGTACTGTTGAGTGGATTTAGAGAAGGACCAGCTTCCGTCTGGATGTGTGCTGATCACTGGAGCGCTGTACCTGCTGAAACTGCTGTCTGTCCTGTAGCATTTAGCTGCTATCAAACCCACCAGACTCAGTAAAAAGATGACTGATACTGAGACGATAGAGACGAGCAGATACAGATTGAGATCTGAAAAACTCTCCTCTTTAACAGGAACTTCTCGGAAGGAGGTCTTTATGTCATCCAGACTCTCAACAACCACAACATCCATGGACATAGTCGCTGAGAGTGATGGCTCTCCATTATCAGACACTGTGATGAGAAGTGGGTGAGTTTTAAGTCGTTGTCACTCATTCGTCTCTTAGTCCTTATTTCTCCAGAACTGCTTCCGATGCGGAACAGATTGGTTCCTTTGGGTTCAGTTAGATGATAAGACAGAAGTGCGTTATATCCAGAGTCAGCATCAACAGATCTGATCTTGGCTACAAAGTATCCCGCTTCAGCAGAGTAGGGAatgttctcactattaactgaTCCAGGTTCAGAATAAGGAGCTAAAATAACCGGACTGTTGTCGTTCTCGTCcagaataaacacatttacagtcgAGTTGCTGCTCAGAGGAGGAACACCAGAGTCTGTGGCCATAACTTGAAACTGAAACCTCTTTGTTTCTTCGTGATTAAATGACTGCAAGCTGAATATTTCTCCACTCAAAGAGTTTATATTTATCAGTGTTGTTACAGGAACACTGGAGCTGGAACTGTCTAACAGTGAATATGAAAGTTGTGCATTTTCACCAGTGTCTGAATCATCAGCGGACACTTTTGTCACCAGACCTCCAGCTTGACCGTTCTCACGTAGAAAAGCGTTAATAACGGGAGCTGGGAAATGTGGAGCATTGTCATTAACATCAGAGATATGTACAGTTATAACAGTGCTGCTGGAAAGAGACGGACTTCCTTCATCTGCAGCTGTAATTGTGATGTTATACAGAGAAACACTCTCTCTGTCCAGAGGTCCATCTACCACTAGAGAATAATGATTGTTATATGATGTCTCCagtttgaaaggaaaagagtcttTCAGAGAGCAGTGTACAATGCCATTTTTACCTCCATCTTTATCAGACACTGTGACTAAAGCAACTGCTGTTCCTGACTTTGTGTCTTCTTTCACACTTTCCAGCAGAGGAGTTGTAACTATTTCAGGCACGTTGTCATTTTCATCCACAACTTCTATTAAAACTTTACAGTCTGTACTTTTTGGAGGACTGCCTTTATCTCTCGCCTGAACACGCAGTTCAATGGCAGGGTATTCTTCATAATCAATTTGACCTTGAACAACAATTTCCCCTGAGTTAGAGTTTATTCTAAACAAGTGCATTTCATCAACATTTCCATAGACTGAATACTGAATTTCACTGTTAATGCCTTCATCCAAATCACTGGCAgaaacagaaataattttagttCCACTTGGTGCGTTTTCCTTCACTTTAACTTTGTACAAAGGTTTACTGAAAATAGGTTTATTATCGTTTACATCCATGATATTAACAACAATACTCAGTGTTCCAGATTTGGGAGGTTTTCCTCCGTCAATAGCGGTGAGTATTAAGTGAATAACAGcttgtttctctctgtctaaAGCTTTCTGTAACACTAATTCAGCAGATATACTTTTTTGCCCGCTATGAACATCGAcagaaaaatattcatttgaactGAGTTTATAGTCTTTCAGAGAATTACTGCCAACATCTGAATCTTTTGCATTAGGAAGATGAAATTTGTCCCCGACATTTGCATCCTCTGTAACATTCACGATATAAGTGCTATCTGGAAAAACTGGAGCATTGTCATTCACATCCAAAATGATAATTTCAAGCCTGTAAAGTCTGTGAGGATTCTGAGCAAGAGCCTCTACATTTAAAGCGCATTTCTGATTACTGCCACACAACTCTTCACGATCAATCCTGTCTTTGACAAACAGTGAGCCCGTTTTCACATTTACATCAAAATACTTCGCATTAGATCCAGGCATAATCTGAAACACGCGTGATTCTAGTTCCTGAGCACTGATCTTCAGGTCTTTCGCTATATTCCCGATCACAGTTCCCTTATTTACCTCCTCGGAGACGGAATAGACAATCTGGCCGAGCGAAGATTTCcataaagacagaaataaaaggATCCAGAAGCCGTAAGATTCAGTAACATCCATGATTGTGCAGCAGAATGTCCCGAGATTATTTCgcgtaaaaataattaaaacggCTAAACAGACCTTTCTCGACGCAACCCGACATCACGACGCAGAAGCTACTATAAGCCTTGATTATTAACACGCCTTCAGCGCATTTCCTCTTGTTCTGATGCAGTAAAGGAGGAGCTCAGATAACTCTCAAAGTCATGGTCTGCAGTGCCACCGCGTGTTCTCACAGTGAAGACACGATAAGATTTATCTTCATATAGTT

Function

symbol description
pcdh1a3 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.
pcdh1a4 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.
pcdh1a6 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules and nervous system development. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: protocadherin alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111703 False 2517 lncRNA 0.46 3 7127588 7137401
TU111704 True 3266 lncRNA 0.40 2 7141923 7148979
TU111705 False 2706 lncRNA 0.41 3 7130709 7148979

Neighbor

gene id symbol gene type direction distance location
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding downstream 25508 7094645 ~ 7102080 (-)
LOC122353004 LOC107552052,LOC107677992 coding downstream 67827 7057711 ~ 7059761 (-)
avd LOC107552052,LOC107677992 coding downstream 150208 6975201 ~ 6977380 (-)
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding downstream 321177 6734920 ~ 6806411 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding downstream 464750 6640993 ~ 6662838 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding upstream 241191 7390170 ~ 7414303 (-)
LOC122352681 NA coding upstream 266414 7415393 ~ 7425751 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding upstream 278857 7427836 ~ 7441824 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding upstream 341582 7490561 ~ 7496338 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding upstream 362745 7511724 ~ 7514061 (-)
G75429 NA non-coding downstream 45130 7029993 ~ 7082458 (-)
G75433 NA non-coding downstream 48223 7078555 ~ 7079365 (-)
G75366 NA non-coding downstream 478918 6645924 ~ 6648670 (-)
G75294 NA non-coding downstream 745147 6380936 ~ 6382441 (-)
G75297 NA non-coding downstream 774704 6352535 ~ 6352884 (-)
G75463 pcdh1a4,pcdh1a3,pcdh1a6,LOC107742396,LOC107586180,LOC107677970 non-coding upstream 5169 7154148 ~ 7159460 (-)
G75465 pcdh1a4,pcdh1a3,LOC107678002,LOC107742395,LOC107742371,LOC107552069,LOC107677970,LOC107742396,LOC107586180,LOC107552012,LOC107720566 non-coding upstream 9052 7158031 ~ 7170618 (-)
G75448 LOC107720705,LOC107742392,LOC107688304 non-coding upstream 51343 7200322 ~ 7207574 (-)
G75446 pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304 non-coding upstream 55201 7204180 ~ 7211461 (-)
G75450 LOC107586188,LOC107688311,LOC107552007,LOC107688294,LOC107677966,LOC107552071 non-coding upstream 63891 7212870 ~ 7221928 (-)
sprn2 LOC107578968,LOC107720715 other downstream 496400 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 586615 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2099075 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3214846 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 3519800 3601612 ~ 3607788 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 28345 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 375215 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 381882 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 702042 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 711243 7860222 ~ 7860303 (-)

Expression


Co-expression Network