G75475 (pcdh1gb2,pcdh1g11,LOC107720703,LOC107677965,LOC107586192,LOC107742390)


Basic Information

Item Value
gene id G75475
gene name pcdh1gb2,pcdh1g11,LOC107720703,LOC107677965,LOC107586192,LOC107742390
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7233373 ~ 7270706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111729
gaaaaaTTACGTCTGTAACTTTAAATTTAAGCCTTATAATAGACCCTAATCTTAAAAacgctgttttttttactttttggacAACAACAATCCCTGTCTTAAAAAAGACTGTGTTCTAACTAGTAAAGGGGTCAGCTCCGCCTCCTCACTAAGATAAAGGTTTTTGGTCTTTTCCTAGCTCAGAGTTGCTCTCAGATTGGTCGTGATTCACTTTTATATTTCAGATGAATTAGGAGCTATCCGATAGGATTCTtagaatctttaaaaatacGGGCCCAGTTGTCaaagagtatttatttatagtctACTTGAGAAGTGACATTATTTTTTccgttaataaataataataatcatccaATGGAACATTTCTTACCAATTCTGCGGAACCGAGATCATCCATGGAACTGTTTTTCATGATTGTGCGCTGCATGGTCTCAGCAAAACTGGGGTCCACCACTAAGACATTCTTCCCACCGAGTGTAGAAAACTTACAGTCACTCTTCCTCGAGTCAGTCGTCATGCACACTTCATAATTATACCCGTGCGGCAGAGTTCCAGTGACTCCTGTGTCCGCGTAATGCGGTGGATAGTACGGAATAACAGGCAGATTGGACTGATATGAGAAGCGAGAGTGTCTCCATCTGTAGATCTTTACTGATATTATGACAACCACACAAGTGATAAATAAGAAGGAAACAGCAGCCAGTGCGAGAACTAGATAAAAGGTTAGGTTCTCGTCAAATTGTTTTTCGTGCGTAAAGTCTGTGAACTCTGACAGCACTTCAGGAAAGCTGTCAGCTACAGCCACGTTAATGGAGACCACAGCTGAGCGAGAGGGCTGTCCGTTATCCTCCACAACAACAGTCAGTTTTTGTTTGACGGCATCTTTATCAGTCACTTGTCGCACAGTTCTTACTTCTCCATTCTGTAAACCCACTTCAAACAGCGCTCTGTCTGGAGCTTTCTGTAGTTTATAGGAGAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTAGTGACCAGATATCCAACATCTGCAGCACGAGGCACAATCTCAGCCACCACAGAAGAACCAGTCTGTACTGGATACAGAACCTGAGGAGCGTTGTCGTTCTGATCTTGAATATTGACAGTTATTGTCACTTCAGAGCTCAAGGGTGGAGATCCTCCATCTCGAGCTGTTACGTTAAAAACAAAGGATTTTAACTGTTCAAAATCCAACGATTTAACTGCACGAATGGTGCCAGTAAGTGAATCTATAGATACTAGAGAACTTACGGGTGCACCACGCATGTCTTCGTCCTTTAAGAAGTAGGACAATTGCGCATTAGGACCCCAGTCTGCATCGTTCGCTTTAACAGTCAATATAGTGAGACCAGGAGAGTTATTTTCActaacaaatgttttatattcctCTAATTGGAATATTGGCGGATTATCATTGACAtcagatatttttacattaagtgTTTTGTTCGCGTAGCGCGCAGGACTTCCTTGGTCCGACACCAAGATCGTTATATTATATTCAGCAAGACTTTCACGATCAAGCGTATCATCAGTAACTAAACTATAATATTCCGCGAGAGATGACTCAATTTTAAAAGGTATGTTTTGATTGATCGAGCACTGAACAAGACCGTTTTTACCAGAATCTGCGTCCTCTACGTTAATGACGGCTACAGTGGTTCCCACCGGGGAGTTTTCAGGAAGAGTATTTGAGAATGACATCAGCTGTATGCTTGGAGAGTTGTCATTTTCGTCGATTACATCTATGACATATTTGCAGGTATCTGCGAGACCTCCTTTATCTCTCgccttaatatttatttgataactATTTTGAGATTCATAATCTAATTGATCAAGAAGTCGAATATCACCAGTCTCTGTATTCACGGCAAAAAGTTTCCTTGACTCTTTGCTGGCAACAGCAAAGGAATAAGAAACATGGCCATTTACTCCCTCGTCAGCATCAGCAGCACTAACAGTACCGATGACTGTACCAGCTGGTGAATTCTCTCTAACTTCGGTTTTAAATACTGACTGTTTACACACTGGAGCATTATCATTAGCATCCAGAACAGTAATGTGAATTTTAACAGTGCCTGATTTCTGAGGTGATCCGCCGTCAGTTGCTACAAGAACCAATTTAATGTCATCGCGTTCTTCTCGATCTAGTTCTCGTTGTAAAACCATCTCAATATATTTGTTACCGTCGGTCTGACTATGAACCTCCAGTTTAAAATTATCAGTTGGATGTAGTTTATAGCTCTGTATACCGTTTAGATCTACATCTGTGTCTATAGCGCTGTCTAAAGGAAACCTTGTTCCAGAGATTGCATTTTCGCTTATTtccaaattaacattttctttcGGAAATAACGGAGCATTATCGTTTATATCTTGCACCTCAACGGTGACTCGATGGAGCTGGATGGGATTTTCTATGATTAGATCAAAGCTGAAGCTGCAAGGCGTCGTTTGCTTACAGAGCTCCTCTCGATCTATCCTTTCTTTAACTACTAGTGTCCCTTTGTCTCTGCTCAGATCGACATACTGTCTTCCGCCCTTCGTAACGACGCGAGCTTTTCCAGATATGAGTCTACTTAGCTCTATCCCCAGATCCTTGGCGATGTTTCCGACGAATGATCCTTCTGGCATTTCCTCCGGGATAGAATATCTCGCATTGCAATATACGACGTCCACTCGGTAAAAGCAGAGAATGAAAAACACAGCCTGCCATTTTAAATGCGCGGAAACCATCCACGGGCTGCGTGATTTGTTCCATGACCTTAAGAAATCCATCTTGATAAGACGCATTATCAAACGAAGATGTAACGAGTATGAATGGTCATTGCAGCCCTGAACACAAAATAACGCATTAATGTTATTTTCGTCGAAGGAGCACTGCGCGTCCAACCTACAAACGCG
>TU111731
GATTCTGTAGACTGGAGATCGTCGATAGAACAATTTTTCTTGATTGTGTGACTCATAGTTTCAGCAAAACTGGGGTGCACAACTAAGACGTTCTTCTCACCGAGTGTAGAAAACTTACAGTCACTCTTCCTCGAGTCAGTCGTCATGCACACTTCATAATTATACCCGTGCGGCAGAGTTCCAGTGACTCCTGTGTCCGCGTAATGCGGTGGATAGTACGGAATAACAGGCAGATTGGACTGATATGAGAAGCGAGAGTGTCTCCATCTGTAGATCTTTACTGATATTATGACAACCACACAAGTGATAAATAAGAAGGAAACAGCAGCCAGTGCGAGAACTAGATAAAAGGTTAGATTCTCATCATACTGTTTTTCTTGCGTAAAGTCTGTGAACTCTGACAGCACTTCAGGAAAGCTGTCAGCTACAGCCACGTTAATGGAGACCACAGCTGAGCGAGAGGGCTGTCCGTTATCCTCCACAACAACAGTCAGCTTTTGTTTGATGGCATCTTTATCAGTCACTTGTCGCACAGTTcttatttctccattctgtaaacCCACTTCAAACAGCGCTCTGTCTGGAGCTTTCTGTAGTTTATAGGAGAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTAGTGACCAGATATCCAACATCTGCAGCACGAGGCACAATCTCAGCCACCACAGAAGAACCAGTCTGTACTGGATACAGAACCTGAGGAGCGTTGTCGTTCTGATcttgaataattattttcactGTCACGTTACTGCTGAGCGGAGGAGAGCCTCCATCTTGTGCTTTTACCCGGAAGTGGAAGTCTTTCAGCTGTTCATAGTCAAAAGAGCGCACAGCTGTAATCAGTCCACTGTCAGGATGAACTGACACATATGATGAGACAGAGACTCCATTAACAGAGCTGTCTTCTAGAATATAAGAAACACGGGCATTCTGATTCCAATCAGAGTCACTGGCTTTAACTGTAAATATAGAGAGACCAGGTGTGTTATTCTCCAGCACAGACGCCTCATAGTGACTCTTCTCAAAGACAGGAGCATTGTCATTCACATCTGATATCTGCACACGGAGAGAGACACTGCTGGAGAGAGCAGGCACCCCTTCATCAGCACATATTACAATGATATTGTACTCAGCATCTCTTTCTCTATCCAGTTCCTGCTCTGTTTGCAAGCTGAAGAAACTGCTGGAAGACGCAATAGTAAAAGGAATATCATCATTAATGTAGCAGCGAACCTGGCCATTCAACCCGGAGTCAagatcatttacatttagcattgcAACAACAGTACTGGGTCTAGACTCCTCTGATATTGAGTTTGACATAGACACAACGCTTATTGTGGGTTTGTTATCGTTTATATCAGTGAGATCAATTATAACTTTACACGAATCAGACAGTCCTCCTTGGTCGCGTGCTTGTATGTTAAGCTGATAACGACTTGACTTTTCAAAATCAGCCGagccttttaaaatgattttcccGCTTTGCGCATCAACCAcgaataaatcatttacatctCCAGTGCTTGACATGTAGTACGTTGTAATCGCATTCGAGCCTTCGTCAGCATCAGAAGCGCTGACGGCCATTATAACGGTGTCTTTAAGCGTATTTTCAGGAAGAGTGGCTTTGTAGACTTTTTGATTGAACACAGGAGGGTTGTCGTTAATATCTAGCACGGTAACACGTATCACCACAGTGCTGGTCAGTTGGGGCTCACCTCCGTCCACTGCTGTTAACAACAAGGACAACTGCTCTTTGTTTTCACGGTCTAGAGCCTTCTGTAACACCATTTCCATGTTTCTGTCGCCATCCGTTTGACTTTGCAAACTTAATACAAAATTATCTGTCGGTTTCAGTGAATAACTCAGATGACTGTTAGATCCGACATCCAGATCAATCGCGTTTTCCAACATGAATCTTGCCCCGATTACAGCAGACTCGCTTATTTGAAACGCAATCTCACCTTTAGGAAAACTCGGAGCGTTATCGTTTATGTCGATGATTTCCACTGTGACATCATACCATTCCATTGGATTTTCTAAAATGAGTTGAAGGTGTAAAGCGCATGGAGTGGTTTTAGCACAAAGCGCCTCTCGGTCTATTTTCTCCGCGGTGAAAAGGATCCCCCTCTCTTTATTCAATCCGACGAATTCGGTGTTGTCTCCAGCAAATATGCGCGCTTTCCCTGACTTCAGTCTTTTTAAATCCAAACCCAGTCCTTGAGAAATATTCCCAACGATCGACCCCTTCGGCATTTCTTCTGGAACGGAATAGCTGATCTGCCCTCTTACCGAGTACCGAAAGAGGATGATACAAAACGCTGCAGCGTGCCACATTACAAAGCTGGCCATTTTCCGT

Function

symbol description
pcdh1gb2 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.
pcdh1g11 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: protocadherin beta-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111729 True 2944 lncRNA 0.42 3 7233373 7270706
TU111731 False 2397 lncRNA 0.44 2 7259888 7266460

Neighbor

gene id symbol gene type direction distance location
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding downstream 131293 7094645 ~ 7102080 (-)
LOC122353004 LOC107552052,LOC107677992 coding downstream 173612 7057711 ~ 7059761 (-)
avd LOC107552052,LOC107677992 coding downstream 255993 6975201 ~ 6977380 (-)
pcdh1a LOC107564544,LOC107678039,LOC107708655,LOC107720713,LOC107586135,LOC108437809 coding downstream 426962 6734920 ~ 6806411 (-)
kcnip3b kcnip3,kcnip3b,LOC107572711,LOC107678047,LOC107720714,LOC107687448,LOC108233759,LOC101482209,LOC108264878,LOC106535652 coding downstream 570535 6640993 ~ 6662838 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding upstream 119464 7390170 ~ 7414303 (-)
LOC122352681 NA coding upstream 144687 7415393 ~ 7425751 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding upstream 157130 7427836 ~ 7441824 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding upstream 219855 7490561 ~ 7496338 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding upstream 241018 7511724 ~ 7514061 (-)
G75445 NA non-coding downstream 1453 7107758 ~ 7231920 (-)
G75450 LOC107586188,LOC107688311,LOC107552007,LOC107688294,LOC107677966,LOC107552071 non-coding downstream 11445 7212870 ~ 7221928 (-)
G75446 pcdh1g2,pcdh1g3,LOC107552007,LOC107586188,LOC107688304 non-coding downstream 21912 7204180 ~ 7211461 (-)
G75448 LOC107720705,LOC107742392,LOC107688304 non-coding downstream 25799 7200322 ~ 7207574 (-)
G75465 pcdh1a4,pcdh1a3,LOC107678002,LOC107742395,LOC107742371,LOC107552069,LOC107677970,LOC107742396,LOC107586180,LOC107552012,LOC107720566 non-coding downstream 62755 7158031 ~ 7170618 (-)
G75487 pcdh1gb9,LOC107552066 non-coding upstream 8046 7278752 ~ 7285469 (-)
G75488 LOC107586138,LOC107677986,LOC107687322 non-coding upstream 15310 7286016 ~ 7292112 (-)
G75486 pcdh1g33,LOC107720701,LOC103911742 non-coding upstream 43476 7314182 ~ 7323206 (-)
G75481 pcdh1gc5,LOC107677983,LOC107552066,LOC107720701 non-coding upstream 46599 7317305 ~ 7340192 (-)
G75482 pcdh1g30,pcdh1g29,LOC107677983,LOC107742370,LOC107586141,LOC107742377 non-coding upstream 49636 7320342 ~ 7324597 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 52552 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 602185 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 692400 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2204860 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3320631 3905614 ~ 3912742 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 253488 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 260155 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 580315 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 589516 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 591579 7862285 ~ 7862366 (-)

Expression


Co-expression Network