G75549


Basic Information

Item Value
gene id G75549
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7487473 ~ 7488567 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111847
TGGGTTAACACTTGGGaaatataaactttatttgCCTTTAAACAGATTCAACAAAGTGAACTACATCCGAGCTGCAGTCCACAGATTACAAGTTGCGAGATTTAGCTGGCATTAACCGTATACATTCTTGACATTTGGATTTCTTACAGTTAACTAATCGATCCCAAACAGGACACTggacaattacaaaaataacacgaACTGTTCAAATACTGGAATAAATCGGCGATACCATTCTGAAACCCATCGGTCATGCGTCGTGAATCAGGTGAGGCTGTTTTAAGACTTCTCGGGTGCATCTCTAATCAGAACGCCACACACACGTTTCCATGTAAATGTTTAAGAAACCATGGACGGGTAGTCTATTAATCTCCATATAAATCATAGGCTTGAAATCATCTTCTCAGACTCTCATTTAAGCAACGAGGCTGCCAAATTAAGGCCACGCTCCATGGACATGACGACACCACGGGGGTGAGGAGAGGCCAGATTGCCAAGGATGGAAAAAGGTCATGCTCGGAGTAAAGTCTTTTCAGGGAATGGCACGgattttacataaaaagtgAGGAGTACAGGGGATCAACATAAAATTGCAGgtaacaaaaagtaaaatcatggtaaaaaaaaaaaaaaaaaaagaaagggggTGCCTAATAatttaagcaaaacaaaagatgGTTTAGCTCTTATTGTACAGTCTGTCTCCATTTCCAGAGCTCTTCGATTACCTTTGTGTCGGTGAAT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
TU111847 True 744 lncRNA 0.40 2 7487473 7488567

Neighbor

gene id symbol gene type direction distance location
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding downstream 45649 7427836 ~ 7441824 (-)
LOC122352681 NA coding downstream 61722 7415393 ~ 7425751 (-)
LOC122352679 LOC107720699,LOC107552063,LOC107742368,LOC107687282,LOC107586145,LOC107678013 coding downstream 73170 7390170 ~ 7414303 (-)
fgf18b fgf18b,LOC107552074,LOC107742373,LOC107687415,LOC108437818 coding downstream 385393 7094645 ~ 7102080 (-)
LOC122353004 LOC107552052,LOC107677992 coding downstream 427712 7057711 ~ 7059761 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding upstream 1994 7490561 ~ 7496338 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding upstream 23157 7511724 ~ 7514061 (-)
ponzr10 LOC107552045,LOC107742363 coding upstream 26084 7514651 ~ 7519121 (-)
LOC122352925 LOC107551999,LOC107677957 coding upstream 31032 7519599 ~ 7523134 (-)
LOC122352928 LOC107675999,LOC107720693,LOC107677996,LOC107552059 coding upstream 42578 7531145 ~ 7533022 (-)
G75548 NA non-coding downstream 363 7486212 ~ 7487110 (-)
G75537 NA non-coding downstream 35422 7450667 ~ 7452051 (-)
G75533 NA non-coding downstream 115555 7370932 ~ 7371918 (-)
G75532 LOC107742369,LOC107687312,LOC107586143,LOC107720700,LOC107552065,LOC107682917,LOC107677962 non-coding downstream 117404 7366811 ~ 7370069 (-)
G75530 cbln17,LOC107720595,LOC107677995 non-coding downstream 123939 7362075 ~ 7363534 (-)
G75633 NA non-coding upstream 120573 7609140 ~ 7616184 (-)
G75654 NA non-coding upstream 199127 7687694 ~ 7687973 (-)
G75666 NA non-coding upstream 272266 7760833 ~ 7761098 (-)
G75667 NA non-coding upstream 272958 7761525 ~ 7763853 (-)
G75749 NA non-coding upstream 608739 8097306 ~ 8099806 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 306652 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 856285 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 946500 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2458960 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3574731 3905614 ~ 3912742 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 35627 7524194 ~ 7528558 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 42294 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 362454 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 371655 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 373718 7862285 ~ 7862366 (-)

Expression


Co-expression Network