LOC122352929 (LOC107675999,LOC107677996,LOC107552059,LOC107720693)


Basic Information

Item Value
gene id LOC122352929
gene name LOC107675999,LOC107677996,LOC107552059,LOC107720693
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7524194 ~ 7528558 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111872
CTCAGTATAAAGGCAAGATTGTGATCACAGATTTAGAAACAGCAGATACGTTGCCTTATGCTGGACCAGTCAACACACAGGGGTAAACATGTCGAATCAAATGGTAGTCATTCAGCCACAGCCTGTCATGATCTCTAGAGATTCTGATCAGTGGGGGTCTGGTATCTGTGACTGTTGCGACAATGTGCCTGAATGTTGCTTTGCTTACTGGTGTTTCTGGTGTTTCACGTGCATCAAAGCAAAGAAATATGGTGAATGTTTATGTCTCCCTCTCCTGGATTTATGTGGTTGCGTCCCACCCATAACCATGTCCATGAGGGTCTCGATGCGCCAGCGTTACGGCATTAGGGGAGACATGTGTAATGACTGCTTGTTGGCCACGTTCTGCAGAGCTTGCGTTTGGTGTCAGATGTCACGGGAGATGAAAGCAAGAAATCTACAGATCACTCTTGTTGGTGCCAGGAACCTGTAATTAGTTTTGAAGCGGCTGTGCTGTTGTGTGAAATGATAAGAATcgtaaaacactgaaaagcagatatatacactgttaaaaatgaaCACGCTTGAACGGTCCTTCGTcgcagaagaaccatttttggttccgcAGAGAACCTTTCAggcaaaggtttttttaaagaactatcTCTTCCTCGGGTTTTTTAGAATCTGAAAAGCCTTCTTTCGCCCACAAAGAAacttttgtgaaacaaaaaggTTCTTTCGAACGTTGAAGGTTCTTTATAAAACCATCTAGAcggaaaaaaattatgtaaaaaatgaaaggttcttctatgggaTTGTGAAGCACCATtatttaagtgtatatatatttattaatatctcATTAACGGAATATCATCGAACTGAATAATGTTATATTACACTTTTCGACTAAATGTGACGTCTGTGTTTTTGTATCTTTAATGTAAGTTACTCATTTTCTAATCAGCAGCATCAATATATCAATATCAGGGCTGTTGTGTCAATAGTGAATgtacttttctgtttttgatttatAAACTTCATTAAAGC
>XM_043250686.1
TGTTGCACTCAGTATAAAGGCAAGATTGTGATCACAGATTTAGAAACAGCAGATACGTTGCCTTATGCTGGACCAGTCAACACACAGGGGTAAACATGTCGAATCAAATGGTAGTCATTCAGCCACAGCCTGTCATGATCTCTAGAGATTCTGATCAGTGGGGGTCTGGTATCTGTGACTGTTGCGACAATGTGCCTGAATGTTGCTTTGCTTACTGGTGTTTCTGGTGTTTCACGTGCATCAAAGCAAAGAAATATGGTGAATGTTTATGTCTCCCTCTCCTGGATTTATGTGGTTGCGTCCCACCCATAACCATGTCCATGAGGGTCTCGATGCGCCAGCGTTACGGCATTAGGGGAGACATGTGTAATGACTGCTTGTTGGCCACGTTCTGCAGAGCTTGCGTTTGGTGTCAGATGTCACGGGAGATGAAAGCAAGAAATCTACAGATCACTCTTGTTGGTGCCAGGAACCTGTAATTAGTTTTGAAGCGGCTGTGCTGTTGTGTGAAATGATAAGAATcgtaaaacactgaaaagcagatatatacactgttaaaaatgaaCACGCTTGAACGGTCCTTCGTcgcagaagaaccatttttggttccgcAGAGAACCTTTCAggcaaaggtttttttaaagaactatcTCTTCCTCGGGTTTTTTAGAATCTGAAAAGCCTTCTTTCGCCCACAAAGAAacttttgtgaaacaaaaaggTTCTTTCGAACGTTGAAGGTTCTTTATAAAACCATCTAGAcggaaaaaaattatgtaaaaaatgaaaggttcttctatgggaTTGTGAAGCACCATtatttaagtgtatatatatttattaatatctcATTAACGGAATATCATCGAACTGAATAATGTTATATTACACTTTTCGACTAAATGTGACGTCTGTGTTTTTGTATCTTTAATGTAAGTTACTCATTTTCTAATCAGCAGCATCAATATATCAATATCAGGGCTGTTGTGTCAATAGTGAATgtacttttctgtttttgatttatAAACTTCATTAAAGCAACACAGAAATTAATACTCATTTACAAAAAGGAAGAGTTTCAATTTAAGCATGAAGCAagaaactttttcttttttgtctttattttaaatcaaaacttaTAGACTGAAATCTTTAATATCTTCTACTTCTGTTGTTACGCAATACATTATTGATCATTTTCTTTGACACGTTCCTGTTCCTGCCTCTGGAAGGGTGTGTTTGCACTTTGCATATTTGCTCGGACACGTATAGTAAAAATTCCTGTAGTCTAGGatatgcatttctgttttgtttgatgCAGCCAATTGCTTATGACTCTTATTCTATTATTAGCAGGAGAGGATATAACTTCTTACAACTTATATTAGATGTTTGACACATAATGCAGGACGTTATTGGCATTTTAGAAGTTAGAAGGCAttttacagaaagaaagaaagaaagaaagaaagaaaggctgCCAGGTGACGGCATACTTGCAAAACAACATACTTGCAAAAATAGCATCAAGGTACGTCACAGACGTTTCTTAACCTTTTCTCTGTGGCTACGCGGGTTTGTTGCATGAAAGCCTGCAAGTAAAAGAGTAGCATGATAgatgaaataataaattcatatcATTCCTAAGATATAAAATTGCAACTGCAggccaaaataaaaggttacacataaaacacattttaaaattatgttcaACAATAGTTAGTGTTTGAAATGGGTACGGCAAAGGCATTCCGCCCCAcaacattttagaattttagaatAGAATGACTggctatagcattatttttttagagaaaCAGCTTCGTAAACACACTGTGAAAAAATCATGGTGAAGAAAATGCTACATAAAAACAAGCTACATttctacattaaataatttagttcagacaggaattaaaacattaaagtaattTCTACACTAGAGCTCAATTTAAACTTGTAGAAATTAAAGTTTAACTTATAAGTATAAttgtttgttacatttataagtATTCTTTAAGTGAATATCAAAGTTAGAATCCAGTTTTTTCACAGTATTTGTGttgtatttacattgttttatgagtacttattgtttttatgatgtTGGCGAATCAGAGTTAATTTCCATAGTAAGCattaattaagtaaaatatacaaGCAAAGAGTTAATAAAATTGACAGGGAATCCCTTTTACTCTTTTGTGAATTCTCCAGCCTTGAATTCTTACATACGGCACCTTTAAATGCCAAGGCAAGCCAATCAAACCTTGGCCCTGTACTCTTTGATTGAACAATAGCTCCGCCCACCACTTCCTTCATATTAATGATCGTGGAGGAGGAGGGAGTGAACTATACTGACTGGGTTTTTGTGAGTGTGCCAGTATAAGCGGTTAAATTTCTTGTTAATCTTACTCTGGAATTTACTAGAGACAGGTAAACAACGTGGCGCATTTTCACAATTGCCATGAAACAAGTTAGATCTTCGGTATTAGATATTTTGTATTGCAGTCTGCTGTCCTTAAGACATGTAATAGAATATTTTAGACTTTAATCTCTTACTTTTATCTGCACATTTCATGCTATATAGGATGGAGTATAGGAAAAATGCCCTACTTAATTTgttagttcgcccaaaaatgtaaaaattgtcaATAAATGgttagttcacccgaaaatgtaaattttactcACCTTTTAAgcaggtgtatgtgactttctacTTTCAGATGAATCTAATCGGAGTTGTAATAAAAATTTTCCTGGCCCCTCCGAGCCTTTCAATAGGGATAAACGGGTGTTTGCTGTGTACAGTTCAGAAGACAGGAAATAAAGTGCAcgtatttgtaataaaacatcCTTCACACGGCTCTCAGGGCTAAAAAGGGCCTCCTGTAGCAAATCCATGCCTTTTAtaagataaatatccatatttcaaatgtattatagACTCACTTTTATTGACTGGGACTGTGTCTGTTGATATGCAggagcaaagaaaacaatgttttatttgtaccAAGGGGGCGTTTTGGGTAAAATGGCCATTAGTCTGACAGTGCAGGCAGTTTTagcttgaaataaa

Function

NR:

description
PREDICTED: cornifelin homolog B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111872 False 1032 TUCP 0.39 4 7526243 7528551
XM_043250686.1 True 3088 mRNA 0.36 4 7524194 7528558

Neighbor

gene id symbol gene type direction distance location
LOC122352925 LOC107551999,LOC107677957 coding downstream 1060 7519599 ~ 7523134 (-)
ponzr10 LOC107552045,LOC107742363 coding downstream 5073 7514651 ~ 7519121 (-)
ugt5g2 ugt5g2,LOC107678052,LOC107552046,LOC107742408 coding downstream 10133 7511724 ~ 7514061 (-)
tlx3b tlx3b,LOC107742409,LOC107586149,LOC107676002,LOC105024610,LOC107552047 coding downstream 27856 7490561 ~ 7496338 (-)
parp14rs4 LOC107720697,LOC107552062,LOC107678011,LOC107552063,LOC107678013,LOC107677959,LOC107742382 coding downstream 82370 7427836 ~ 7441824 (-)
LOC122352928 LOC107675999,LOC107720693,LOC107677996,LOC107552059 coding upstream 2587 7531145 ~ 7533022 (-)
cldn7b cldn7b,LOC107586151,LOC107676017,LOC107678043,LOC107720692,LOC107552057 coding upstream 10722 7539280 ~ 7544064 (-)
fgf11b fgf11b,LOC107677987,LOC107586150,LOC107720691,LOC107676016,LOC103026543,LOC108443340 coding upstream 21435 7549993 ~ 7588859 (-)
epob epob,LOC107676014,LOC107586154,LOC107742357 coding upstream 153337 7681895 ~ 7686300 (-)
trnal-uag_1 NA coding upstream 156084 7684642 ~ 7684723 (-)
G75549 NA non-coding downstream 35627 7487473 ~ 7488567 (-)
G75548 NA non-coding downstream 37084 7486212 ~ 7487110 (-)
G75537 NA non-coding downstream 72143 7450667 ~ 7452051 (-)
G75533 NA non-coding downstream 152276 7370932 ~ 7371918 (-)
G75532 LOC107742369,LOC107687312,LOC107586143,LOC107720700,LOC107552065,LOC107682917,LOC107677962 non-coding downstream 154125 7366811 ~ 7370069 (-)
G75633 NA non-coding upstream 80582 7609140 ~ 7616184 (-)
G75654 NA non-coding upstream 159136 7687694 ~ 7687973 (-)
G75666 NA non-coding upstream 232275 7760833 ~ 7761098 (-)
G75667 NA non-coding upstream 232967 7761525 ~ 7763853 (-)
G75749 NA non-coding upstream 568748 8097306 ~ 8099806 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other downstream 343373 7177324 ~ 7180821 (-)
sprn2 LOC107578968,LOC107720715 other downstream 893006 6628425 ~ 6631188 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other downstream 983221 6538122 ~ 6540973 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other downstream 2495681 5019307 ~ 5028513 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 3611452 3905614 ~ 3912742 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other upstream 2303 7530861 ~ 7544090 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other upstream 322463 7851021 ~ 7859714 (-)
trnal-aag_32 NA other upstream 331664 7860222 ~ 7860303 (-)
trnal-uag_2 NA other upstream 333727 7862285 ~ 7862366 (-)
rnasekb rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166 other upstream 354784 7883342 ~ 7885482 (-)

Expression


Co-expression Network