G75593 (LOC107678008)


Basic Information

Item Value
gene id G75593
gene name LOC107678008
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7845219 ~ 7849236 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU111925
CTTGCTTTCCGTAGTCTCTGTGGTTGATCCCTTTCCATGGTGGGAGCTGCAGGTGGACGCTTCCCGTCCCATGTgtccttcactctctctctcggcCGAGTCATTCCCGCTGGAGTGGGCATCCGTGTCATCCGAGTGCGTCGGCCGGGCCGCCGTGGAGATGTCCAGCCCGGGACAAACGGCCTGGCTGTCGGTCATTCTGGGAGAAGCGTTACTGTGGGTTTCCCCCTCATCTTTATGTGATGTTCCCTTCCCAGTAAGAGTGCCGCAGGTCAACGGTGTTTGGAAGTTGTCATTACTCATAATTAAGGAGAATAAGCGTATATATCACATCTGTCTTGTGCATCTGTAAAGGAGCTTCTGACACAGCAGGGCATGGGATGTTCTCGGTTATCCTGAATATCTGTCGCGCTAAAACATTTTTCGTTGTCCGTTTGACCTGGATGTATCTGATTAATAGTCCTTAAAGTTGAAAGCCGTCTACAAAAGCCTCCCGGCTGCTCCGAAGTGAAGTTTTCTTTTCCGAGCTTGCATACGGATAGACGCGTGTGCAACACTGTAGTTCAGTACTGAATCTCGGGTCTTGTCTGACACTAACCCGTGTACGCACACCATCATTCTTGCTTTGGGAACAAATTTCACGTGTATCCAGCAACTCCCGAAACCGTCTCTCATTGGCTCCTAAC

Function

NR:

description
PREDICTED: period circadian protein homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU111925 True 686 lncRNA 0.51 2 7845219 7849236

Neighbor

gene id symbol gene type direction distance location
tmem88a tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001 coding upstream 27518 7812206 ~ 7817701 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding upstream 35136 7782188 ~ 7810083 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding upstream 97823 7709173 ~ 7747396 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding upstream 136999 7695316 ~ 7708220 (+)
nlgn2b nlgn2b,LOC107554306,LOC107678031,LOC107720555,LOC107675989,LOC108443341 coding upstream 163475 7615404 ~ 7681744 (+)
LOC122353466 NA coding downstream 14543 7863779 ~ 7863912 (+)
ap4m1 ap4m1,LOC107554303,LOC107702797,LOC107742404,LOC107720677,LOC107586161,LOC107675998 coding downstream 17099 7866335 ~ 7871448 (+)
med11 med11,LOC107720680,LOC107702800,LOC107676028 coding downstream 32649 7881885 ~ 7883525 (+)
c10h17orf49 zgc:103508,LOC107720679,LOC107742347,LOC107702799,LOC107675997,LOC107586165,LOC107554320,LOC105902403 coding downstream 36378 7885614 ~ 7889230 (+)
si:dkey-175g6.2 si:dkey-175g6.2,LOC107702794,LOC107720675,LOC107554299,LOC107586203,LOC107742340,LOC107676019 coding downstream 82847 7932083 ~ 7936387 (+)
G75583 NA non-coding upstream 10320 7806361 ~ 7834899 (+)
G75574 NA non-coding upstream 162779 7682154 ~ 7682440 (+)
G75502 NA non-coding upstream 356652 7487475 ~ 7488567 (+)
G75516 NA non-coding upstream 437098 7402133 ~ 7408121 (+)
G75514 NA non-coding upstream 445186 7399428 ~ 7400033 (+)
G75607 NA non-coding downstream 51987 7901223 ~ 7902731 (+)
G75629 NA non-coding downstream 186898 8036134 ~ 8069911 (+)
G75766 NA non-coding downstream 316212 8165448 ~ 8165704 (+)
G75774 NA non-coding downstream 435919 8285155 ~ 8285865 (+)
G75799 NA non-coding downstream 464325 8313561 ~ 8314122 (+)
si:ch211-237l4.6 NA other upstream 22701 7817810 ~ 7822518 (+)
G75496 LOC107720595,LOC107677995 other upstream 479888 7360984 ~ 7365331 (+)
LOC122353118 pcdh1g1,pcdh1g2,pcdh1g3,pcdh1gb2,pcdh1g9,pcdh1g11,pcdh1gb9,pcdh1g18,pcdh1g33,pcdh1gc5,pcdh1g32,LOC107677968,LOC107742392,LOC107688304,LOC107720705,LOC107552007,LOC107677966,LOC107586189,LOC107742391,LOC107688284,LOC107688294,LOC107586188,LOC107720703,LOC107677965,LOC107586192,LOC107742390,LOC107586191,LOC107552005,LOC107720701,LOC107688268,LOC108191536,LOC107552066,LOC107586138,LOC107687322,LOC107677986,LOC107677985,LOC103911742,LOC107677983,LOC107742370 other upstream 505024 7197537 ~ 7340195 (+)
LOC122352414 pcdh1a3,zgc:123181,pcdh1a4,LOC107742396,LOC107552012,LOC107586180,LOC107720566,LOC107720564 other upstream 681996 7153586 ~ 7163223 (+)
G75422 pcdh1a6,LOC107677970,LOC107552011,LOC107677969,LOC107742394,LOC107720565,LOC107586182,LOC107742396 other upstream 694638 7142293 ~ 7150581 (+)
LOC122353465 NA other downstream 12010 7861246 ~ 7861379 (+)
trnas-gcu_13 NA other downstream 12357 7861593 ~ 7861674 (+)
trnat-agu_2 NA other downstream 12724 7861960 ~ 7862033 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 23303 7872539 ~ 7880100 (+)
G75750 NA other downstream 252240 8101476 ~ 8102924 (+)

Expression


Co-expression Network