rnasekb (rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166)


Basic Information

Item Value
gene id rnasekb
gene name rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7883342 ~ 7885482 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU112044
ACACATCTCGTCGATTGGATCGAGAGAAGGGTGCAGGAGACATCATCCCGACTGGATGTAGCGTCCTTTTCCCAGTTTTGAGAGGAAGAATCAGTGGGCAATTTTGGGTAAAATGCCGTCGCTTTTATTCTGTGGGCCTAAATTGGCCGCCTGTGGGATCGTGTTAAGCATCTGGGGTGTCATTATGCTGTCAATGTTGGGAATTTTCTTCAGTGCAAAATCTGCTGTGCTGATCGAAGATGTTCCTTTTACTGAGGAAGACATCCGTGATGACAAGAATCCACCGGGGAACATTTACGGACTCTACAACCAGGTTGGCATCAACTGCTTCATTGCTGCCGCCATCTACGTCGGTGTTGGCGCGGTCTCTCTGTGTCAGGTTCGCCTTAACAAGCGCCAGGAGTACATGGTCACATAAACCCAAACTATTTTGAATTCAACAGCAATTATtcctaattatttatttttattattttcttctcaaTGATTTCGGGAGGACAGTCTGTTCTGTTACGTTTTCTGAAAGGGATATATTTGGCAGTTCATCTTCAGGTCAAAATCTAAACACTAGACATGTTGATAGTGTAATGCATATAAAGTGAAATGATAATGTAAAACAGCATATATGCATAGATACATGT
>XM_043250077.1
CACATCTCGTCGATTGGATCGAGAGAAGGGTGCAGGAGACATCATCCCGACTGGATGTAGCGTCCTTTTCCCAGTTTTGAGAGGAAGAATCAGTGGGCAATTTTGGGTAAAATGCCGTCGCTTTTATTCTGTGGGCCTAAATTGGCCGCCTGTGGGATCGTGTTAAGCATCTGGGGTGTCATTATGCTGTCAATGTTGGGAATTTTCTTCAGTGCAAAATCTGCTGTGCTGATCGAAGATGTTCCTTTTACTGAGGAAGACATCCGTGATGACAAGAATCCACCGGGGAACATTTACGGACTCTACAACCAGGTTGGCATCAACTGCTTCATTGCTGCCGCCATCTACGTCGGTGTTGGCGCGGTCTCTCTGTGTCAGGTTCGCCTTAACAAGCGCCAGGAGTACATGGTCACATAAACCCAAACTATTTTGAATTCAACAGCAATTATtcctaattatttatttttattattttcttctcaaTGATTTCGGGAGGACAGTCTGTTCTGTTACGTTTTCTGAAAGGGATATATTTGGCAGTTCATCTTCAGGTCAAAATCTAAACACTAGACATGTTGATAGTGTAATGCATATAAAGTGAAATGATAATGTAAAACAGCATATATGCATAGATACATGTggtgagcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgcaagtaaTGTGTTATATTTTCCAGAAATATTTAGATCTTTGGCTCCACATTCCCtatcatataaataaacaaaaatcttaataGTTTGCTTCTGATGAATAACCTAAAAGACACTGAGTCCTTATGATAGTTGAGTTGATGGTgtttgtttgacattttttggTATTTACAGATGTGTGTggtaatataaatgttttattattttattgaagtaCACCCTGCAACCCTCGTGCTGTATACTTGATATCACATTTGTGATGAATATGTGAATGGAGAGTCTTATGTACCCTTCAATAAAATGCtagtgaaaaaatgtttttattttgccataactatttaaaaagtgATAACAGAACATAAGAAAACATGTGACATTTCTTAATAAGACAAACGTTTTAGTGATATTACGATgggaaaaatatgtaattaaacaaAACGTCTGTggattatgaaaaataaaaattgttgttgACTTGTA

Function

symbol description
rnasek Enables endoribonuclease activity. Predicted to be involved in RNA phosphodiester bond hydrolysis, endonucleolytic. Predicted to be integral component of membrane.

NR:

description
PREDICTED: ribonuclease kappa-B

GO:

id name namespace
GO:0009303 rRNA transcription biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004521 endoribonuclease activity molecular_function

KEGG:

id description
K19770 RNASEK; ribonuclease kappa

RNA

RNA id representative length rna type GC content exon number start site end site
TU112044 False 641 TUCP 0.42 3 7883906 7885482
XM_043250077.1 True 1204 mRNA 0.34 3 7883342 7885481

Neighbor

gene id symbol gene type direction distance location
si:ch1073-143l10.2 LOC107720678,LOC107742346,LOC107742345,LOC107554315,LOC107586164 coding downstream 1371 7880208 ~ 7881971 (-)
and3 LOC107742405,LOC107676004,LOC107586202 coding downstream 18056 7862610 ~ 7865286 (-)
per1a per1a,LOC107678008,LOC107742351,LOC107676011,LOC107586160,LOC107720685 coding downstream 34155 7833109 ~ 7849187 (-)
pcolcea pcolcea,LOC107720687,LOC107554310,LOC107678009,LOC107586222,LOC107676034 coding downstream 53758 7823409 ~ 7829584 (-)
zgc:172339 zgc:172339,LOC107720553,LOC107586200,LOC107742407,LOC107676025,LOC107554295,LOC107677954 coding downstream 188426 7692846 ~ 7694916 (-)
LOC122352606 LOC107702789,LOC107554304,LOC107720581,LOC107586167,LOC107675994,LOC101883815,LOC108424542 coding upstream 3724 7889206 ~ 7895138 (-)
LOC122352481 LOC107720603,LOC107554305,LOC107702788,LOC100538037,LOC107742403 coding upstream 10613 7896095 ~ 7897870 (-)
im:7136398 LOC107720586,LOC107554322,LOC107702786,LOC107742402,LOC107675995,LOC107586224 coding upstream 14532 7900014 ~ 7904543 (-)
LOC122352483 LOC107720676,LOC107554321,LOC107702795,LOC107676021,LOC793236 coding upstream 19624 7905106 ~ 7910185 (-)
nle1 nle1,LOC107720672,LOC107708614 coding upstream 66308 7951790 ~ 7956870 (-)
G75667 NA non-coding downstream 119489 7761525 ~ 7763853 (-)
G75666 NA non-coding downstream 122244 7760833 ~ 7761098 (-)
G75654 NA non-coding downstream 195369 7687694 ~ 7687973 (-)
G75633 NA non-coding downstream 267158 7609140 ~ 7616184 (-)
G75549 NA non-coding downstream 394775 7487473 ~ 7488567 (-)
G75749 NA non-coding upstream 211824 8097306 ~ 8099806 (-)
G75767 NA non-coding upstream 279966 8165448 ~ 8165708 (-)
G75868 NA non-coding upstream 329180 8214662 ~ 8221865 (-)
G75871 NA non-coding upstream 345206 8230688 ~ 8260267 (-)
LOC122352914 NA non-coding upstream 1001522 8887004 ~ 8887358 (-)
trnal-uag_2 NA other downstream 20976 7862285 ~ 7862366 (-)
trnal-aag_32 NA other downstream 23039 7860222 ~ 7860303 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 23628 7851021 ~ 7859714 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other downstream 339252 7530861 ~ 7544090 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other downstream 354784 7524194 ~ 7528558 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other upstream 116879 8002361 ~ 9032489 (-)
G75863 NA other upstream 287867 8173349 ~ 8285918 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other upstream 433407 8318889 ~ 8396399 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other upstream 634184 8519666 ~ 8527447 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other upstream 657615 8543097 ~ 8556088 (-)

Expression


Co-expression Network