LOC122352912 (fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083)


Basic Information

Item Value
gene id LOC122352912
gene name fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 8580009 ~ 8581128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU112216
CCCATAACAGCCTggttataaacattttttctaaatatcatcctttgtgttcggcagaatccaaaaaaaattcatacaggtttggaactgcTTGAGGGTGAGCAcgtgatgacagaatttccatttttgggtgaaccgttcctttagcTCATCTGTATAGTTTTTGATCGCTTCTTAGTGAAAGGTTGATTTAAGAAATGGTTTATGATGCACTTTCAAACTTCAGGGGCGTATGTTCCGCTGCAGTGCAGAGTGTTGTGAGAATCCTGGCCACTCCATGAACCAGGTGCACCAGTGTATAGATCGCTGCCACGCACCGCTGGCTAAAGCTCAAGGACTGGTCACCAGTGAACTCGAGCAGTTTCAGGATCGTCTCTCGAGGTGTACAATGCACTGTAATGACAAAGCCAAAGATCTGTTTGACTCCGGGGGGAAGGAGGTAGCCGTGCGGGCGCTGATGGACAGCTGTGTAAGCAGCTGTGTGGATGAGCACCTGAACCTGCTGCCCAGCATGACTCGCAGACTGAAGGACAGCCTGAACTCAATACCTCAGTGAAGCCTGTAGGCTGTATGAAATAATTCTTGTGGACTCATAAGTTTACTGGATAGAAGAATGTGGTCTTTGCTATCGCCTAACTGTGACTTGGTGAATGGTTTGTGCTGATTTCTGTGTccatattgtttgttttttgtacagACAATAAATAATGTGATCAAAC
>XM_043250660.1
AgtgtaaaatgaattttaaattgaaaaatagaaatttttaaatagaaaaaaattattttaaattgtaatagtagTTCACAGTAGTATTGTATAGTAAAATCTTACAGACCCTAAACTATAACAGAAGTccataattgttttaattactaATCCTATAATAATACATCATTTATGTAGTTAATTTATACtaagtcattccaaacctttatgaatttttttttgttctgaaaaacgtttgtaaccaggctaTTTTAGGTCACCATTGACCGTTGTAGTATTTTCAACGGTGACCCATAACAGCCTggttataaacattttttctaaatatcatcctttgtgttcggcagaatccaaaaaaaattcatacaggtttggaactgcTTGAGGGTGAGCAcgtgatgacagaatttccatttttgggtgaaccgttcctttagcTCATCTGTATAGTTTTTGATCGCTTCTTAGTGAAAGGTTGATTTAAGAAATGGTTTATGATGCACTTTCAAACTTCAGGGGCGTATGTTCCGCTGCAGTGCAGAGTGTTGTGAGAATCCTGGCCACTCCATGAACCAGGTGCACCAGTGTATAGATCGCTGCCACGCACCGCTGGCTAAAGCTCAAGGACTGGTCACCAGTGAACTCGAGCAGTTTCAGGATCGTCTCTCGAGGTGTACAATGCACTGTAATGACAAAGCCAAAGATCTGTTTGACTCCGGGGGGAAGGAGGTAGCCGTGCGGGCGCTGATGGACAGCTGTGTAAGCAGCTGTGTGGATGAGCACCTGAACCTGCTGCCCAGCATGACTCGCAGACTGAAGGACAGCCTGAACTCAATACCTCAGTGAAGCCTGTAGGCTGTATGAAATAATTCTTGTGGACTCATAAGTTTACTGGATAGAAGAATGTGGTCTTTGCTATCGCCTAACTGTGACTTGGTGAATGGTTTGTGCTGATTTCTGTGTccatattgtttgttttttgtacagACAATAAATAATGTGATCAAACCAGCTTGCTGGCTGTTAAATGATAAA

Function

symbol description
fam136a Predicted to be active in cytoplasm. Is expressed in several structures, including alar plate midbrain region; digestive system; eye; musculature system; and optic tectum. Orthologous to human FAM136A (family with sequence similarity 136 member A).

NR:

description
PREDICTED: protein FAM136A

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112216 False 719 TUCP 0.45 2 8580299 8581102
XM_043250660.1 True 1035 mRNA 0.39 2 8580009 8581128

Neighbor

gene id symbol gene type direction distance location
sftpba LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508 coding upstream 98021 8475593 ~ 8481988 (+)
ggcx ggcx,LOC107744113,LOC107686456,LOC107569403,LOC107562573,LOC107713363,LOC107688460 coding upstream 153079 8420336 ~ 8426930 (+)
fam136a fam136a,LOC107744116,LOC107713366,LOC107562571,LOC107569401,LOC107686460,LOC107688083 coding upstream 168406 8409867 ~ 8411603 (+)
stoml2 stoml2,LOC107686459,LOC107569390,LOC107688641 coding upstream 178413 8398186 ~ 8401596 (+)
fam166b LOC107744158,LOC107562540,LOC107686494,LOC107713372,LOC107555534,LOC107688046 coding upstream 285174 8292462 ~ 8294835 (+)
LOC122352417 NA coding downstream 489712 9070840 ~ 9085659 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding downstream 709723 9290851 ~ 9302634 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding downstream 722508 9303636 ~ 9323880 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding downstream 744696 9325824 ~ 9389728 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding downstream 826794 9407922 ~ 9416339 (+)
G75813 NA non-coding upstream 112732 8464744 ~ 8467277 (+)
G75814 LOC107569391,LOC107713297,LOC107744111,LOC107686454,LOC107562576 non-coding upstream 117602 8397832 ~ 8462407 (+)
G75799 NA non-coding upstream 265887 8313561 ~ 8314122 (+)
G75774 NA non-coding upstream 294144 8285155 ~ 8285865 (+)
G75766 NA non-coding upstream 414305 8165448 ~ 8165704 (+)
LOC122352915 NA non-coding downstream 122386 8703514 ~ 8704860 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding downstream 127626 8708754 ~ 8712198 (+)
G75974 NA non-coding downstream 664870 9245998 ~ 9253481 (+)
G75984 NA non-coding downstream 685687 9266815 ~ 9273289 (+)
LOC122353086 NA non-coding downstream 696305 9277433 ~ 9283648 (+)
G75750 NA other upstream 477085 8101476 ~ 8102924 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other upstream 699909 7872539 ~ 7880100 (+)
trnat-agu_2 NA other upstream 717976 7861960 ~ 7862033 (+)
trnas-gcu_13 NA other upstream 718335 7861593 ~ 7861674 (+)
LOC122353465 NA other upstream 718630 7861246 ~ 7861379 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other downstream 132075 8713203 ~ 8716277 (+)
G75937 NA other downstream 152651 8733779 ~ 8734996 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other downstream 495738 9076866 ~ 9207335 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other downstream 768044 9349172 ~ 9396047 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 1110971 9692099 ~ 9699817 (+)

Expression


Co-expression Network