gbe1a (gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410)


Basic Information

Item Value
gene id gbe1a
gene name gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9076866 ~ 9207335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU112450
GGATACAACTGTGTCCAGCTCATGGCAGTTATGGAACATGCCTACTATGCAAGCTTTGGCTATCAGGTCACTAACTTCTTCGCAGCTTCcagCCGCTTCGGCACTCCTGATGATCTGAAGCATCTGGTTGACACCGCGCACTCGATGGGCCTCACGGTTCTTCTGGACGTGGTCCACAGTCACGCCTCCAGCAACACAGAAGATGGACTCAACTACTTCGACGGAACGGACTCCTGCTTCTTTCACGCAGGCTCCAGAGGAAACCACTCGCTCTGGGGCGGTCGGCTCTTCGATTACTCCAGGTGAACCGCTGCTAAGAAATATGCAAGCTGCTCACATTCCCAATTCTTG
>XM_043249832.1
ATGATGGTGGAAATCTACGAGAGTGCAGGTCATGTGAGAGATTGTGACCTCAGGACGGAGAGACAAATACACACCAACCACTTTAGTGTACAGATAATTAGGAAATTTAACCAGTTCATCTGTTACTACATTTCCTTTGTAAAGAAGAGCTGGGCTGAGAGCAAAAGATACTGTACTGAGAGAGAAGCAGATCTGATCATCATAAACAACAGAGAAACAATCTGGATTGGTGTGACTGACAGTGATGTGGAGGGCCGCTGGAAATGGGTTGACTGCAACAGACTGACCTCTGGATACGAGCGGTTTGCCGAGCGTCTGGCACAGCTGGAGGAGGCGGAAGGGGCCTTTGATTGCTTCACATTGAGCTACCGGTCCTTTGGAATTCAGCGGCGATCCAACAGCGCTCTGGTCCTTAGGGAATGGGCACCAGGAGCGGAGGCCGTCTTCCTGACTGGGGATTTCAATTCCTGGGAAAAACAGTCTCACCCATTCACGCAGAAAGAATATGGGAAATGGGAACTATACCTCTCCCCAGAAGAGGACAAATCTTCTGCCATCAAGCACCTGACCAAACTTAAGCTTGTGGTCCTGACTAAAACAGGTGAATATCTATTTCGGATCTCTCCATGGGCCAAATATGTCACAAAAACCCTAGATTCCGTCACCTATGACTGGACTTACTGGGACCCTCCAAAACCATACCAGTTCCAGCACCCCAGACCCCCACGGCCCAGCAGTCTTCGTATCTATGAGGCCCATGTGGGCATCAGTTCGCCCGAGGAAAAGATTGCCTCGTACAAAAACTTTACCAGAGATGTGCTTCCTCGCATTATGGATCTTGGATACAACTGTGTCCAGCTCATGGCAGTTATGGAACATGCCTACTATGCAAGCTTTGGCTATCAGGTCACTAACTTCTTCGCAGCTTCcagCCGCTTCGGCACTCCTGATGATCTGAAGCATCTGGTTGACACCGCGCACTCGATGGGCCTCACGGTTCTTCTGGACGTGGTCCACAGTCACGCCTCCAGCAACACAGAAGATGGACTCAACTACTTCGACGGAACGGACTCCTGCTTCTTTCACGCAGGCTCCAGAGGAAACCACTCGCTCTGGGGCGGTCGGCTCTTCGATTACTCCAGCTGGGAAGTGTTGCGGTTCCTCCTTTCCAACCTGCGCTGGTGGATGGAAGAGTACCGCTTTGATGGCTTCAGGTTTGACGCTGTGACTTCAATGCTGTACCACCACCATGGCATCGGTCAGTTGTTCTTCAGCTGTAAACAAGCACGTCGTTTCGGGGACTACAGCGCGTGCTTTGGAATGCACGTGGACGAAGATGCACTTGTCTATCTGATGCTGGCCAATCACGTTCTCCACAAGCTCTACCCACAATGCATCACTGTGGCAGAGGATGTATCAGGGATGCCAGGCCTGTGCAGGTCTATTGAAGAGGGAGGACTGGGCTTTGATTATCGTCTGACCATGGCCGTGCCAGACAAATGGATCCAGGTCTTAAAGGAAGTTCGGGATGAGGACTGGGATTTGGAGAACATTGTTCACACCCTGACCAACAGAAGAAAGGAGGCATCTATCACCTATGCCGAGAGTCATGACCAAGCCTTGGTTGGGGACAAGTCTCTGGCGTTCTGGCTGATGGATAAGGAAATGTACACCAACATGAGCGCTCTTATTGCCATGACGCCTGTTATAGACCGTGGCATCCAGCTGCATAAACTCATCCGTCTCCTCACTCACAGTCTAGGAGGGGGCTACCTCAACTTCATGGGCAGTGAGCCTGCCATGGGGAACAAAGACACCTTCCGCCAGGGCCACTTAGGCTTCCTCCAGCCCCTGCCGCTGCCCTTTCTGTGTCTTGCTCATGAGGGGGAGCCCTCTTTCCATGCCACCAGTCAGGCTTGGAAGATGAGAGAGGTGATGAGGCAGGGATGGGCTTGTAGGATCAATCATTTCTCCTCGTGGGAGAATATCGAACCTTCCGGCCCTCGTACGCAGCTGCAGAGGACGCCCACACCGGGTGGATCGGGACAAGAACGTGGCTGGCTCACGCTGCTTTCTGATAGGTGA

Function

symbol description
gbe1 Enables 1,4-alpha-glucan branching enzyme activity. Involved in glycogen biosynthetic process. Located in extracellular exosome. Implicated in glycogen storage disease IV and pulmonary tuberculosis.

NR:

description
PREDICTED: 1,4-alpha-glucan-branching enzyme-like

GO: NA

KEGG:

id description
K00700 GBE1, glgB; 1,4-alpha-glucan branching enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
TU112450 False 351 TUCP 0.54 2 9149791 9152619
XM_043249832.1 True 2085 mRNA 0.52 18 9076866 9207335

Neighbor

gene id symbol gene type direction distance location
sftpba LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508 coding upstream 594878 8475593 ~ 8481988 (+)
ggcx ggcx,LOC107744113,LOC107686456,LOC107569403,LOC107562573,LOC107713363,LOC107688460 coding upstream 649936 8420336 ~ 8426930 (+)
fam136a fam136a,LOC107744116,LOC107713366,LOC107562571,LOC107569401,LOC107686460,LOC107688083 coding upstream 665263 8409867 ~ 8411603 (+)
stoml2 stoml2,LOC107686459,LOC107569390,LOC107688641 coding upstream 675270 8398186 ~ 8401596 (+)
fam166b LOC107744158,LOC107562540,LOC107686494,LOC107713372,LOC107555534,LOC107688046 coding upstream 782031 8292462 ~ 8294835 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding downstream 83516 9290851 ~ 9302634 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding downstream 96301 9303636 ~ 9323880 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding downstream 118489 9325824 ~ 9389728 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding downstream 200587 9407922 ~ 9416339 (+)
LOC122352939 LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193 coding downstream 209148 9416483 ~ 9422807 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 364668 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 372006 8703514 ~ 8704860 (+)
G75813 NA non-coding upstream 609589 8464744 ~ 8467277 (+)
G75814 LOC107569391,LOC107713297,LOC107744111,LOC107686454,LOC107562576 non-coding upstream 614459 8397832 ~ 8462407 (+)
G75799 NA non-coding upstream 762744 8313561 ~ 8314122 (+)
G75974 NA non-coding downstream 38663 9245998 ~ 9253481 (+)
G75984 NA non-coding downstream 59480 9266815 ~ 9273289 (+)
LOC122353086 NA non-coding downstream 70098 9277433 ~ 9283648 (+)
G76150 NA non-coding downstream 505492 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 555671 9763006 ~ 9766783 (+)
G75937 NA other upstream 341870 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 360589 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 495738 8580009 ~ 8581128 (+)
G75750 NA other upstream 973942 8101476 ~ 8102924 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other upstream 1196766 7872539 ~ 7880100 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other downstream 141837 9349172 ~ 9396047 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 484764 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 718986 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 736399 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 1110518 10317853 ~ 10320345 (+)

Expression


Co-expression Network