LOC122353086


Basic Information

Item Value
gene id LOC122353086
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9277433 ~ 9283648 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU112468
ctTTGAGAGGCAGGAAAACAAGTTAAGTGCAGAGCGGTCTTCCCCTTGATGCCTTCGCTCTCCCTCTTCTCCTCTTCCTGTGCCTCCTGCAGTTACCGGCACTTACTGAGAATTTGTTTCAGGGCAGCTGACGAATTTATAGCGGTTTCATGTGAGAAAGCATTGAAGAGATTCTATTGGCTCCATCGGGAGGCTGAGTACACctgtcagccaatcagctgcGAGTCTGCCTCTGCGCTGAAAAATCACGGGCCGTCTACAGATCAATCAGCATATCATTTTGAGCACGATTGTGAGCAGAAAGCAAAGGCTGCTTAAATCTGTCCTCACTCTGCCACCGTCTGGGGAAGAAAAAGACCACAGACATCTCCAAACCCACGGATGTGGTTAGCAACATGACAGTGCAGAAGCCACGTTCCGTTGACCTCCGCCACCATCTCCAACGTCTGAAACGATCCTGGGATCAGGTCATACACGTCAGTCCGGTGAATGTCTCGGCGTGAAAATGGACGGTGTGAATGTCTGCTTCATTGCCCATCCCAAACAGgtTAAATAAGGGGGCAGATTGCGGATGTTTTGACTTTCTCTACCTGGCATGACGGCCTCTGGTTTAGAAGAAGTCCTGACTCCATGCGCCTGTATTGAGTAAGGACGGCTGGCTCTGTTCATGAATGTGATCAGCAAAACCTGACCTACTTCAGCTCGGATTATAGGTcctgtaaaacacaaacatgtcaTCATTCATCCATTCAAACGAGGGAGTTTTAGGCgaaaaacaaacttttgaatggctaATTTTAAGTCACCCAAAATCTCCAAGTGTTCCTCTTGTGGTTGTCTCAGTTTTCTTGTTCTGAAGGTGGCGTCAGTGTATTCTCGATAAACTGCTTTCTTATATCTGGAGCCTAGTCTGTTTTTTCCAGTTCCCACAAATAAACTGCCAGGACTGAGACAAGAATCTGATTACGAATGCCATTCAAACACtgcaacactaaaaaaaaagctcttaatGGGTTACtttaccccaaaataaaaatgttgttattaatcACATATCCCCATGTTGTTCCGTACCTGTTAAAGCATAGTTTGTCTTCAgatcaaaattttaaatattttggatgaaaaccaggaggcttgtgacttgTGTCTCATTAACTGTCAGAGTCCAGAAAAGTAtaacagacattgacagaatagtccatctgccatcagtggatcaatctgtattttatgaagcCACAAGGATACTTTTTGTACGCAAAGAAGTTAAAAATGACGACCTTATTCAGCAATTCGCCTCCTCTGTGTCTCCTCCCTGTCACCGTAGCACCACTGACTATTCTTAGCTTTGTGTTTGGAATGATATGGGGATAagtatttaatgaaaacattttcgttatggggtggagtatccctttaaatcaACCTTTTGTCCTCAGTGGTGTTGAAGTTTTGCAGCTCCCAGGTGCGATCGGGTGAGTAGTCCCACTCCACCTCTTCAGCACAGATGAAATACTCTACTATCAGAGAATCTAAAATGTCCTCATCCTCTGAGCCCTTCACTCTGTACAGCTGTCGCATCCCACCAACATAGTGATCAGAGACGAGACAGCTCACCTCAAATATACCTACAGTTACACAAAATATGTAGAAGGTGACTTTtattgcttgtgtgtgtgtgtgtgtgtgtagatagatATACTGACCACTGACATCTGGTTGCATGGACACTGTGACTGCAGTGTGTGGGAACAGGCCCAGCGTGTCACGATTTGTTCCCTGTCTCTGGAAGGTGTTGCCTTGGAAGTAAATCCCATGCATGTCCATCTCTGTGCCAAGACCCATGAGGTGCCATCTGACCTTCAACCCTTTATTTATCTCAAGGCCAGGCAGGTTCCCGTACATGAAGCCGTTCACAGCTACGTTCAAGGAAAAAGAGTCTACATAtacattgttgttttaaagcctatgttttaagtaatgttttaatttgatataattGGATAAAGTATATAGTGATGATCCTGAAAAGAAGATGAGCTTTTGTCTTGAGACTATGCCAGTAGGTGGATATGTTATTTCAAAACTATACCATCTGACtaaaaaacagacagactgtGTCATGAACCGTGCCTCTGTGGATCTCTCCGACGGCCACCGAAGGAAACCCTCCCCTGAGTATTAACCATCCCGAACTACATTACCCATCATGCCCTATACCTGGGactgattacctgcccaggtgtaaCCCATTACACCCTCTTTATAAACTGTGCCCAGACTCTCTCTCATTGCGAAGTCTTACCTTTACTCCAGTTTTGATTTTGGACTGTCTTTCGTTtatctgattgtttgctgcctttTGATCCCTTGCCTGAATTCTTCAACCCTGTTTGCTCACTGCCTGCCTGGCAGTGAGCCTGGTGCTGTTTACGATTCTGCCTCTGTCTCTTCTATTACCGACGCTGTTGTTGAACCCCTGCCTGTTAGACCATTCTTAATAAAGC
>XR_006251959.1
CGAATTTATAGCGGTTTCATGTGAGAAAGCATTGAAGAGATTCTATTGGCTCCATCGGGAGGCTGAGTACACctgtcagccaatcagctgcGAGTCTGCCTCTGCGCTGAAAAATCACGGGCCGTCTACAGATCAATCAGCATATCATTTTGAGCACGATTGTGAGCAGAAAGCAAAGGCTGCTTAAATCTGTCCTCACTCTGCCACCGTCTGGGGAAGAAAAAGACCACAGACATCTCCAAACCCACGGATGTGGTTAGCAACATGACAGTGCAGAAGCCACGTTCCGTTGACCTCCGCCACCATCTCCAACGTCTGAAACGATCCTGGGATCAGGTCATACACGTCAGTCCGGTGAATGTCTCGGCGTGAAAATGGACGGTGTGAATGTCTGCTTCATTGCCCATCCCAAACAGGTACCAAACAACCCTTTCTCCCTCCACCATTTCTAGACCATGAAGATTTGCGTAGAGCTTCCCATTGATCCCTGTCAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005507 copper ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112468 True 2510 lncRNA 0.44 5 9277433 9283648
XR_006251959.1 False 495 lncRNA 0.49 4 9277564 9280809

Neighbor

gene id symbol gene type direction distance location
LOC122352417 NA coding upstream 191774 9070840 ~ 9085659 (+)
sftpba LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508 coding upstream 795445 8475593 ~ 8481988 (+)
ggcx ggcx,LOC107744113,LOC107686456,LOC107569403,LOC107562573,LOC107713363,LOC107688460 coding upstream 850503 8420336 ~ 8426930 (+)
fam136a fam136a,LOC107744116,LOC107713366,LOC107562571,LOC107569401,LOC107686460,LOC107688083 coding upstream 865830 8409867 ~ 8411603 (+)
stoml2 stoml2,LOC107686459,LOC107569390,LOC107688641 coding upstream 875837 8398186 ~ 8401596 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding downstream 7203 9290851 ~ 9302634 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding downstream 19988 9303636 ~ 9323880 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding downstream 42176 9325824 ~ 9389728 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding downstream 124274 9407922 ~ 9416339 (+)
LOC122352939 LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193 coding downstream 132835 9416483 ~ 9422807 (+)
G75984 NA non-coding upstream 4144 9266815 ~ 9273289 (+)
G75974 NA non-coding upstream 23952 9245998 ~ 9253481 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 565235 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 572573 8703514 ~ 8704860 (+)
G75813 NA non-coding upstream 810156 8464744 ~ 8467277 (+)
G76150 NA non-coding downstream 429179 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 479358 9763006 ~ 9766783 (+)
G76182 NA non-coding downstream 539316 9822964 ~ 9824196 (+)
G76184 NA non-coding downstream 541269 9824917 ~ 9825970 (+)
G76248 NA non-coding downstream 601621 9885269 ~ 9902178 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other upstream 70098 9076866 ~ 9207335 (+)
G75937 NA other upstream 542437 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 561156 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 696305 8580009 ~ 8581128 (+)
G75750 NA other upstream 1174509 8101476 ~ 8102924 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other downstream 65524 9349172 ~ 9396047 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 408451 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 642673 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 660086 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 1034205 10317853 ~ 10320345 (+)

Expression


Co-expression Network