LOC122353220 (slc46a3,LOC107701100,LOC107555149,LOC107718789)


Basic Information

Item Value
gene id LOC122353220
gene name slc46a3,LOC107701100,LOC107555149,LOC107718789
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9349172 ~ 9396047 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU112489
tttttttttttttttttttttTTTATGTGCGTAGACGTTCTTGTTTTTTGGGCTCTAAACACGTGAGAGCTCATGTTGGGTTCGTTCACATTGCTGAAAATGACTATAAATGTTAGTTTCATTTCATGCATACCTattgtatatacaaatatgccGTTTGAAAGTTGTTACACAttgatatacagtatgttttaaaatagtatattgatattgtatttttttaaataaatcatttgtaaaCCTTGCTACTCTTTCTCGTAAaagataaatgacatttaaaacatgacacaatagaagaaaattattgaaaatgtCTAAATGAATGGCTTGCATCTGGGCACTTTATGAATATTCAGCGGTCATTTCTTCATGAAGTGGCTGATGATGTCCATGGGCAGAGGGAAGATGATGGTGGAGTTCTTCTCGGCTGCGATGGTGTTGAGGGTTTGGAGGTATCTGAGCTGAAGGGCAGATGGAGCCTCTGCGATCACCAGAGACGCCTCCTTCAGAGCTCTGGATGCGTTCATCTCACCCTCCGCTGCTATAACCTACATTATCAGACATTATATTAGGGTTGGGCGTCACAAAA
>XM_043251189.1
cacacgagGAGTGGAAGTGTTACATGCTCTAAAGTCCCAAAAGAATCATCAGATCGGAACACAACATGCTACTAAGTGATCTTTCTGTTCGCTGCGTCCTTTGATGATTCAAGAGGATGTGAAGAAGGAGCGAATGGCTTTAAATATGGAAAGATTTCTCTTATCGTAACTGGCAGGTTTAATTGCTTTATGTCCTCTCAAGCGCCTCTCCTGTTATTTTTGCCGGTGTAGAGCAGGAAGAAGGATGGGTCGTGTGCTTCTGATCGAGCCGGCGGTTGGCCTGTATGCGTTTGCCATGTTTATGATCTACCCTCTGCTGCAGCAGTATGTGTACCGTAGGCTGTGGTTTGATCTGAGCGGCACAACCTACCCCGCCGAGAGTCTGTCTCACTGCTCAAACAACCACAGCTATGTCACCATACATCAGgCCGTGCAGAAGGAGACGTCCATATTCCTCCTCAAGAGTGAGCTGTGCTTCCTCATTCCCAGTCTCATATCCGCGCTGCTCCTGGTGTCATACAGCGACCACTGCGGGCGTAAAGTCGCCATCGTTCCTCCCCTGGTGGGGGACACTTTGTTCGCTCTCTGCTATGTTTTGGTCAGCAGGTTCTCCTTCAGTCTCAGTTACCTGCTGGCTGCGTCCTTCCTGTCGGGCCTGATGGGCGGCCCCACCACTCTGATCGGAGGATGCTTCGCTTATGTGGCCGACCTCTGCGGAGCGGATCCGGAGGGAAAGAAGACTGTCCGAATGGCTCGGCTGGATATGATTTTAGGTGTTTTGACTGGGTTAGCTTCTCTGTGCACTGGATTCTTCATCGAAGCGGCAGGCTTCACCTGGCCCTTCCTCACCGCAGTCTTTCTGCACCTGATAAACCTCTTCTATGTGTTGGTCGTCTTGAAGGAGTCCCTGGTTCTCCCAAACCCGAGTCTGTCTTCGTCGGGTCACTCAGAAGCCCCCGAAGCCCCTCGGCTGCGGCAGTCTCAAGCTCTTACCGCCCGTCTGCAGGGCGTCTACCTGCTCTTTGCGACCTCTAAACGGAGAAGGAATGTAGTGCTGTTGCTCATGCTGGCTGCTTTTGCCTTTTTCAGGGTAGCGCTGCAGGGTGGCATGTCCATCTTCATCTTGTATGAGTTGAACACTCCTCTGTGCTGGAGCGAGGTGTTGGTGGGCTACGGCTCGGCTCTCTCCACCGCCATCTATCTGGTGAGTTTTGCCGGTGTGGCGCTGCTCTCCCGCTGTCTCCCCGACGCCTACATCATCCTGCTGGGGCTGACGTCTGTGGCAGCCGGCCTCATCATGGCAGCGTTCGCAAAGTCTACCCCGCTCATGTTCCTGGTGAGGTTGCCTTTGCTGCTGTCCATCATGCCAACTCCTGTCCTGAGGTCCATGATGTCTAAAATAGTGTCTGGATCCGAGCAAGgTGCCATGTTTGCGTGTGTAGCTTTTGTGGAGATGCTGAGTGTTGGTGTTTCATTTACGATGTTCAGCAGCATCTATGCAGCTACTCTGTCCTGGTTCTCCGGGTTTAGCTTCCTGCTCGCCGCGGGCCTAACTCTCATACCAGCCATCCTAGTCTGTGTTCTTCTTTGTCTCCGTCTGGATGTGTACGAGGAATCCCTCATACTGAAAGAGGAGAGGATGGAAAACCCCACCGAAACCAGTGAACTACCACCCTAACACGGACCCTGGGAACTCTTTGGCACAAGAGGGTCCTCCAGTGGAAAGATAGATAATACGTGTGTGAAATGAAAGGCAAACCAAGAAGTTTATGTGCGTAGACGTTCTTGTTTTTTGGGCTCTAAACACGTGAGAGCTCATGTTGGGTTCGTTCACATTGCTGAAAATGACTATAAATGTTAGTTTCATTTCATGCATACCTattgtatatacaaatatgccGTTTGAAAGTTGTTACACAttgatatacagtatgttttaaaatagtatattgatattgtatttttttaaataaatcatttgtaaaCCTT
>XM_043251190.1
cacacgagGAGTGGAAGTGTTACATGCTCTAAAGTCCCAAAAGAATCATCAGATCGGAACACAACATGCTACTAAGTGATCTTTCTGTTCGCTGCGTCCTTTGATGATTCAAGAGGATGTGAAGAAGGAGCGAATGGCTTTAAATATGGAAAGATTTCTCTTATCGTAACTGGCAGAGCAGGAAGAAGGATGGGTCGTGTGCTTCTGATCGAGCCGGCGGTTGGCCTGTATGCGTTTGCCATGTTTATGATCTACCCTCTGCTGCAGCAGTATGTGTACCGTAGGCTGTGGTTTGATCTGAGCGGCACAACCTACCCCGCCGAGAGTCTGTCTCACTGCTCAAACAACCACAGCTATGTCACCATACATCAGgCCGTGCAGAAGGAGACGTCCATATTCCTCCTCAAGAGTGAGCTGTGCTTCCTCATTCCCAGTCTCATATCCGCGCTGCTCCTGGTGTCATACAGCGACCACTGCGGGCGTAAAGTCGCCATCGTTCCTCCCCTGGTGGGGGACACTTTGTTCGCTCTCTGCTATGTTTTGGTCAGCAGGTTCTCCTTCAGTCTCAGTTACCTGCTGGCTGCGTCCTTCCTGTCGGGCCTGATGGGCGGCCCCACCACTCTGATCGGAGGATGCTTCGCTTATGTGGCCGACCTCTGCGGAGCGGATCCGGAGGGAAAGAAGACTGTCCGAATGGCTCGGCTGGATATGATTTTAGGTGTTTTGACTGGGTTAGCTTCTCTGTGCACTGGATTCTTCATCGAAGCGGCAGGCTTCACCTGGCCCTTCCTCACCGCAGTCTTTCTGCACCTGATAAACCTCTTCTATGTGTTGGTCGTCTTGAAGGAGTCCCTGGTTCTCCCAAACCCGAGTCTGTCTTCGTCGGGTCACTCAGAAGCCCCCGAAGCCCCTCGGCTGCGGCAGTCTCAAGCTCTTACCGCCCGTCTGCAGGGCGTCTACCTGCTCTTTGCGACCTCTAAACGGAGAAGGAATGTAGTGCTGTTGCTCATGCTGGCTGCTTTTGCCTTTTTCAGGGTAGCGCTGCAGGGTGGCATGTCCATCTTCATCTTGTATGAGTTGAACACTCCTCTGTGCTGGAGCGAGGTGTTGGTGGGCTACGGCTCGGCTCTCTCCACCGCCATCTATCTGGTGAGTTTTGCCGGTGTGGCGCTGCTCTCCCGCTGTCTCCCCGACGCCTACATCATCCTGCTGGGGCTGACGTCTGTGGCAGCCGGCCTCATCATGGCAGCGTTCGCAAAGTCTACCCCGCTCATGTTCCTGGTGAGGTTGCCTTTGCTGCTGTCCATCATGCCAACTCCTGTCCTGAGGTCCATGATGTCTAAAATAGTGTCTGGATCCGAGCAAGgTGCCATGTTTGCGTGTGTAGCTTTTGTGGAGATGCTGAGTGTTGGTGTTTCATTTACGATGTTCAGCAGCATCTATGCAGCTACTCTGTCCTGGTTCTCCGGGTTTAGCTTCCTGCTCGCCGCGGGCCTAACTCTCATACCAGCCATCCTAGTCTGTGTTCTTCTTTGTCTCCGTCTGGATGTGTACGAGGAATCCCTCATACTGAAAGAGGAGAGGATGGAAAACCCCACCGAAACCAGTGAACTACCACCCTAACACGGACCCTGGGAACTCTTTGGCACAAGAGGGTCCTCCAGTGGAAAGATAGATAATACGTGTGTGAAATGAAAGGCAAACCAAGAAGTTTATGTGCGTAGACGTTCTTGTTTTTTGGGCTCTAAACACGTGAGAGCTCATGTTGGGTTCGTTCACATTGCTGAAAATGACTATAAATGTTAGTTTCATTTCATGCATACCTattgtatatacaaatatgccGTTTGAAAGTTGTTACACAttgatatacagtatgttttaaaatagtatattgatattgtatttttttaaataaatcatttgtaaaCCTT

Function

symbol description
slc46a3 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC46A3 (solute carrier family 46 member 3).

NR:

description
PREDICTED: solute carrier family 46 member 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112489 False 589 lncRNA 0.37 2 9349172 9396047
XM_043251189.1 True 1989 mRNA 0.50 7 9390890 9395702
XM_043251190.1 False 1934 mRNA 0.51 7 9390890 9395702

Neighbor

gene id symbol gene type direction distance location
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding upstream 25292 9303636 ~ 9323880 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding upstream 46538 9290851 ~ 9302634 (+)
LOC122352417 NA coding upstream 263513 9070840 ~ 9085659 (+)
sftpba LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508 coding upstream 867184 8475593 ~ 8481988 (+)
ggcx ggcx,LOC107744113,LOC107686456,LOC107569403,LOC107562573,LOC107713363,LOC107688460 coding upstream 922242 8420336 ~ 8426930 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding downstream 11875 9407922 ~ 9416339 (+)
LOC122352939 LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193 coding downstream 20436 9416483 ~ 9422807 (+)
tpte tpte2,LOC107685006,LOC107720658,LOC107718790,LOC107701101 coding downstream 29639 9425686 ~ 9430836 (+)
chordc1b chordc1,chordc1b,LOC107693908,LOC107720649,LOC107718728,LOC107701124 coding downstream 229544 9625591 ~ 9629093 (+)
grm5a grm5a,grm5,LOC107693909,LOC107720647,LOC107718729,LOC108423821,LOC107555132 coding downstream 237818 9633865 ~ 9658549 (+)
LOC122353086 NA non-coding upstream 65524 9277433 ~ 9283648 (+)
G75984 NA non-coding upstream 75883 9266815 ~ 9273289 (+)
G75974 NA non-coding upstream 95691 9245998 ~ 9253481 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 636974 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 644312 8703514 ~ 8704860 (+)
G76150 NA non-coding downstream 316780 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 366959 9763006 ~ 9766783 (+)
G76182 NA non-coding downstream 426917 9822964 ~ 9824196 (+)
G76184 NA non-coding downstream 428870 9824917 ~ 9825970 (+)
G76248 NA non-coding downstream 489222 9885269 ~ 9902178 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other upstream 141837 9076866 ~ 9207335 (+)
G75937 NA other upstream 614176 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 632895 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 768044 8580009 ~ 8581128 (+)
G75750 NA other upstream 1246248 8101476 ~ 8102924 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 296052 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 530274 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 547687 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 921806 10317853 ~ 10320345 (+)
LOC122352518 NA other downstream 1742791 11138838 ~ 11146033 (+)

Expression


Co-expression Network