G76162 (LOC107693916,LOC107701134,LOC107701133)


Basic Information

Item Value
gene id G76162
gene name LOC107693916,LOC107701134,LOC107701133
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9763006 ~ 9766783 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU112705
CAGCACATTCAGCACAATAGATTTGcgtattaaatgtcatttacaatTCTCTGTACTTACTTGGTGGTGGATAACATTTCTCAGAGACACCGCACGGAATCAGACCAGGACTGATAGGGCTCTGGGAGTGCTAGAAAGTTTTTATGATGCATGCATTTCCCAAATTGATGTGGGACAACTGTTCCTTAGTTCGTTCGTTTTGGTAATATTCTTTTTCCCTCAGTGTCTCATGGTCTGACAGCTACCTAAAATAGAAATGTGATGTGCTATTTAGCAAAtggaacattttatttatttttcctttgatGGCAAAGAACTGGTCATGAGtgctgtatttactgtaaacaCCGTAAATGGTGTTTCATTTTCTAAATCAATATGGGTTTCTGGTGCACTTCTAAACTGCTGCCTATTGATTctaaatgaacttaaaaaaatacttatatatacttatctgtctgtctgtctgtaatgTTGAGAACggatttataatgtattatatataaatgcgcTGTACAAAATGAGTTATATAGcataaaatagcattaaatagCATTACATAGCAATAGCATCACAATTAACATCTGTATACATCGGATCcctgaaatgtatacatttaagaaagtagcctaagaatttttttttatgcaacaaaAAGAACATCTCATGATTCAAACTGTTCTTTATATAACAATGTATCAAGAGCAGGAACTACAAATGGCAACCACTTTGCTTGAACACACTTGTCACAAACaaggacaaaaacaacagcagaggGGAGGAAATGCTGGCGCTGCCTCAGCGTCCATTAAATATGACTCATTTGTACACTATTGTGGTGGAAAACAGAAAAGATATTGTCGACATTGTTTTGTGTTCGTTGAAGTCATTACTGACGCATTTTTATGAAGCAAAAAGCGCCAGTTTGTCGTTGCTTCAGTGCCACCTTGTGTTTGTACCTGATACGACAAGGACATTTTCATAAACGTTACACTGGTATCAATATCAGTGTTAACCCCAAACACCCTggttaaaccatttttaaatggtttgtgtatttgacagaacaaagaaattcatacaagtttggaactacttgagggtgagcaaatgaccacattttaaatttttgggtgaactattcattgaAGATTAGGCGTGGGTTTTAGTTATAGGAACCAACCAGGTGGAAGCATCCAGACATAACCCCATCAAGTTTTCACAGCGTTAACGGAGTCGTATTCTgcagaattaatttttaataagacAAGCCACCGTTTAAAAACCACaccaaactttatttaaaacacagcaAATAGATGCCGCGTTGACGAAGAACAGACCACGTACAAAGTTATTTGGATAAAACTGCAAATATAAATTAGGAAAATTTATTTTCGGTTAATTATTTCCACAGTATGAACATACACAGTCTGAAAGGCAGAGGGTAAAACCAAGGAGCTTTGACACTTTCGTCATTTCCACTAAAAAGGATCCATGGCTGAAGGTGCAGTGATTGTTTTTCACGTGGAAGGGCAtctcttattttaaaatacacgtGCAGGGTGTAACATGTGCGTTTTCCTCTTTATCATTATACAACAtaccataaaacatttcaaaaatcattctcacCGAGACAAATTCAGTATAAACAGGACGAATCTGCTACATTTTAGCACTTTGTAGGGGTcctttgaattaaaataagtcatttatgCACCTAAGAGTCTGGCTGTTGAATTCACAAGAACACCAAAAGCCCACTAAGCGAGGATTATGGGTAGATTaatttgctaataaataaacaattattgcaatttttctACCATATTCAAGTAGAacatcatttgtgtgtgtttgctgtacAGTGATTGTAATACTGGGTTGCTGGTGACCTATGaacaaaaggagaaaaaaaaagcaagcaaggAACTGTTGGGTTTGTAACAGGAATGGCATTAAACGGCTAGCTGAACTTATGACATTTTCAGGGAACGTTGCTGCACTCAACAAAAATCGCCTGCGTGTAGCCATTACGGAAAACTAGTGAGGTTATTATACGAAGCATCAAGTCACAAATCCCTGAATAAAAATGAGGACATGAACCACAACTGAACAGATCGATCATGATCttgcatttcaaacaaaaaagataaactGAAAGAACATGTAGCTGCCTGTCTGTCAGTATGAAGCCTTTATAAATACATTGGCTGTACAGTTGGCATCTtgtgatgtctggacttaaatCGTTCACTCAAATCAAAATGGTCAAATTTACTTACCCTCAGGTAGTTCCATACCTGTATGAATTTCCTTGTTCAGCCGAACACAAAAGGAATACAGGATGTTTTAGGTCACCATTGactaccatagtaggaaaaaaaaaaatactatggtcAATAGTGTCttaaaacagcctggttacaaaaattgttcagcagaacaaaaagaTATTCATACAGACTTTGACCTAtttgagggtgagcaaatgacgacaattcatttttgggtgaactattcctttaaaatagcAGGAAGTCTGCATTGATATTTGGGTGGAGTGGTttgaaacatcaaaaaaaaaaaaaaatctatggtTTAAAGTTCTTCAGTTCTGGCTTTCAGTAGGATTGTCAGTGCATCGTGTCTGTGAAGGCTTGGACTCAGTAAGTTTCTGCCTTTCCACGCACAAGTCTATAAAACAAAACGTCACAGCTCGCAAATTCCCTCTCCACTCAGAAGATGTCGCTGTTGCAGCCGTTTTTAAAATCGTCCCTGCGAACCCAAATAACCTCGCAGTCCCTCTCGGATGTGACGCCCTCCACGGCGCACTGCTTTCTCAAGAGGGTCAGCTTCAGGGGGGCGTGGGATTTCGGAGGTTTGTCGTCCGAAAGTCCGCTGAGACCTTGGTCTTCGTCTCCTTCTACCGAAAGGGCTTCTAAAGACTCCTCCAGACTCGGCTCAGAGGAAGGGCCCCGGACGGATTGACAGTACTCATCGTCGTCACTGAGGATGTCCGTCTCCTTCACGTCATCCTGGTTTTCGTAATTCTGCAGGTCGAACTGATCCTCCACCCAGCGGTCTGTGTCTCGGATAGGCTGCTGGGGTTTCTGGAGCGAAGACAGCTGGGGCTCTGTCGGGGAGATGGGCGAGAGCTCCTGGGATGAGCCGTCATCGAAAACCACACTCGTGTCTATGGTGAAACGACTACGGATCAGCTTCCGATGGCCAAGGGTTCGGGATGGAGCTGAAACTGGAAGAGAAGAAAGCATGAATGCTAACTGTTCTCTTAGAAAAGAAACCAGAGAGTCGTCTGCTTTAGTAAAGAAAGTAAGCAGCAATATCATCTGCTGGACACTAGGATTTAaatttgttatgtaataatcaGCTCACCCTAAAGCCTAAAACAAAACTGCGGCGCTAATCTTGTTAACGAGAGCAAGATGGAAAGCTACACAGTGGGAGAGTTAGCAGGAATAAGGGAGAGGAGAAGATAGATGGATAGTgttgcagaaaaaagaaaatcaaatgttCAATTTACATAAGATGTCCCCAACATACCCGCTCTGTTTATTGTGGGTCGTGAACCCTTTAGCGCACAAAGCCGCTTCCCTCCAAAGGGAATATATTGCTGATTCGGAGGCAAAGTCTCTGTCTTCATTAACTGACGACGTTGTTTGTTCCTCAGGATAGAATGAACGGTCTTCAAGAAGTCTTTTTTACTCTCTG

Function

NR:

description
PREDICTED: T-lymphoma invasion and metastasis-inducing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU112705 True 3735 lncRNA 0.40 2 9763006 9766783

Neighbor

gene id symbol gene type direction distance location
bach1b LOC107693912,LOC107720644,LOC107557217,LOC107555188,LOC107718731,LOC107701131 coding upstream 52286 9700102 ~ 9710720 (+)
rab38b LOC107693892,LOC107557212,LOC107718792,LOC107701102,LOC108277304,LOC108423822 coding upstream 96145 9660717 ~ 9666861 (+)
grm5a grm5a,grm5,LOC107693909,LOC107720647,LOC107718729,LOC108423821,LOC107555132 coding upstream 104457 9633865 ~ 9658549 (+)
chordc1b chordc1,chordc1b,LOC107693908,LOC107720649,LOC107718728,LOC107701124 coding upstream 133913 9625591 ~ 9629093 (+)
tpte tpte2,LOC107685006,LOC107720658,LOC107718790,LOC107701101 coding upstream 332170 9425686 ~ 9430836 (+)
ugt5d1 ugt5d1,LOC107720577,LOC107557224,LOC107693893 coding downstream 76765 9843548 ~ 9846885 (+)
trim47 trim47,LOC107701143,LOC107718738,LOC107557227,LOC107720633,LOC107693923 coding downstream 228022 9994805 ~ 10000994 (+)
synj1 synj1,LOC107693927 coding downstream 425678 10192461 ~ 10216083 (+)
slc9a6b slc9a6b,LOC107720626,LOC107701149,LOC107718745,LOC107555173,LOC106563705 coding downstream 450042 10216825 ~ 10224105 (+)
fhl1b fhl1b,LOC107718794,LOC107701105,LOC107548848,LOC107693928 coding downstream 457738 10224521 ~ 10233003 (+)
G76150 NA non-coding upstream 49898 9712827 ~ 9713108 (+)
LOC122353086 NA non-coding upstream 479358 9277433 ~ 9283648 (+)
G75984 NA non-coding upstream 489717 9266815 ~ 9273289 (+)
G75974 NA non-coding upstream 509525 9245998 ~ 9253481 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 1050808 8708754 ~ 8712198 (+)
G76182 NA non-coding downstream 56181 9822964 ~ 9824196 (+)
G76184 NA non-coding downstream 58134 9824917 ~ 9825970 (+)
G76248 NA non-coding downstream 118486 9885269 ~ 9902178 (+)
G76290 LOC107557233,LOC107555179,LOC107693876,LOC107720538,LOC107701146,LOC107718741 non-coding downstream 315949 10082732 ~ 10083775 (+)
G76291 LOC107718741,LOC107555179,LOC107693876,LOC107720538,LOC107701146 non-coding downstream 318942 10085725 ~ 10085960 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other upstream 63189 9692099 ~ 9699817 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other upstream 366959 9349172 ~ 9396047 (+)
gbe1a gbe1,LOC107685012,LOC107708609,LOC106581537,LOC108410718,LOC105900410 other upstream 555671 9076866 ~ 9207335 (+)
G75937 NA other upstream 1028010 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 1046729 8713203 ~ 8716277 (+)
ufm1 ufm1,LOC107701138 other downstream 159538 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 176951 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 551070 10317853 ~ 10320345 (+)
LOC122352518 NA other downstream 1372055 11138838 ~ 11146033 (+)
picalma picalm,picalma,ccdc83,LOC107744613,LOC107699270,LOC107548833,LOC107693888 other downstream 1706229 11473012 ~ 11586547 (+)

Expression


Co-expression Network