fgf13b (fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526)


Basic Information

Item Value
gene id fgf13b
gene name fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 10267354 ~ 10283665 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU113078
GCGGCTTGTTGAAGACCACAGTCACGTCTCTCGGGCTGTCTGTCACCATGCAGCCGCCGAAGCCGTGCTGCTGCAGGAGCCACTGCGAGGAGAacgagctgctgctgctgctgcaatcCAGCCCAGTGTCGAAAAGAGAGCGATCTGGAAGCTCCGCACTAGTGGATGTGGATATTTTTCCTTCTTGGATCATATTGCTGACAGCTGAGTTCAGCTGCTGTTTCCTGCGCCTCTGAATTTCCGTATTTTGGGCGGTCTTGGGGAGCAGGGACGGGGAATCTGTTGAGTACCTATGCAGATCTCCTCTGCTGAAAACATGAGCACATCTGCAGGGGAAGCCGATTAATCCACTCAACTTCAATTAAAGGCTGCGTTATTGAAAGGCGGGACCTCTTGCTCACTATTTTCCGACACAATTCCCCTCTCTCtatttctccctctctctctctcttcctctgtttcTCACATGaagataatatttaattatatccTCAGCCGCGGTGTGTTAACAGGTGCTCATTTTTCTGAATCAGCGCATGGCTTAGTGAAGCTTCGGATCATGGCACAATGGCACGCGTTCCTCTCTCCCACAAGCGCGCAACAAAAAGGCAACGTTTTTTAGAAGACAGTTCTTTTCCCcggagagaagaagaagaggagctGCTGTCCGGGATCCGCTGCACCATGTCAGGGCACAGCAGCCGACGCTGAACGAGACGGCTGTGAAGGCTTCAAACCAAGTGATTTGTcaataggaaaaaaatatgctCGATCCTCGCGGGGACGACAGCGGACTTCTGAAATGACCATTACGCAGTCCGTCATGGGGTATTGATTTTTCGTCCTCCGTGACAATGCTCTGAGCGCACAGGACTTTAACATACACAACATATGGTCATTTTTAATCTGGGACGCGTCGCCACAACAAAACGCCAAACTGGCTACAGCCGCAGCGATCGCCAGCTCCCTCATTCGGCAGAAGAGGCAGGCGAGGGAGCGGGAGAAAGCCAATGCCAACCGCTGCGCCAGCAGCCCCAACAAGAGCATAGGGAACTGCGAGAAGCCCAGCAGGCTCAACTTGTTCTCGCGTGTCAAACTCTTCGGCTCAAAGAAACGCAAGAGAAGGCGGCCAGAGCCTCAGCTCAAGGGGATAGTCACCAAGCTCTACAGTCGACAAGGCTTTCATCTACAACTCCAAGCTGATGGGACCATCGATGGTACAAAAGAGGAAGATAATAGCTATGCTATTTTCAACCTCATCCCCGTTGGGTTACGAGTGGTGGCTATACAGGGTGTCCAGACCAAGCTCTACCTGGCCATGAACAATGAAGGCTACCTGTATACATCTGAGCACTTCACGCCAGAGTGCAAATTCAAAGAGTCAGTGTTTGAGAACTATTACGTGACCTACTCGTCAATGATCTATCGGCAGCAGCAGTCGGGCCGAGGCTGGTACCTGGGTCTCAACAAAGAGGGTCAAATAATGAAGGGCAACCATGTAAAGAAGACAAAGCCGGCTGCACACTTCATCCCCAAACCTCTCAAAGTTGCCATGTACAGAGAGCCGTCGCTCCACGACCTGACCGAATTCTCCCGCTCCGGAAGTGGCACTCCAACGAAGAGCCGCAGCGCCTCGGCCATGCTCAATGGCGGCAAGACTCTGAGCCAGAATGAGTCAACATAACCGCAGGGCACAACTGCGGTCTGCTGCTGTACAGCTGCTGGACTCTACCATCAACTAAACAGCACAAACGCGTTTACAAGAGTGCAGTGAAACCCTTAGCTGGTCGCTAGCTAGTGTTTCCTGAAATCACTGTGATGAGAACACAAGTGCAAACCTACATTGTACAATCTTCTGCAGGTCAACCTCGTGAGACAAACAAACCAAGCCATCTTTCTGACGTAGGGGTCTGCGTCCGTTTGCGGGCCATCCCTGTTTCCATGTGTAGCATACAGAGCTGTGGTTTTCTCCTGTGGCATTGTCACAGAATCTTCTAGAACACctacttttgtgttttgctcCATTTCTTCTTAGGGATGCCAACTCCATAGCGCTAAGTCAAGTACAACATGACAATAGCAGCTTGTGCGACCCATTTATCGGTATATAGAGGCAGAAATCCCAAAGGTCTTTGGACATATGATATAAGTATTTCAGCTCAGCTTTTTTGAGGCAGCGGTTCATTGTTGTGTGCTTTTTAGATGAGGCGTTTTTGCTCCTCgcttctctttttctgtcttttcagcTTCCCCCCACACATTGTTATTCTGCAAATTAAACAGATTTAGGGTTCAGTCTGTCTGCACACCAAAGATGTCATTAGTCTCTTTGTATGGAGGTAAGTCAATTTGTGTAATTTCAGCTCCCTCAGACAGATGGTTGAGAAAACCGCAAGAGTGAATGTCATTTAGTGAGAGGAAATGTATTCAGGATAGAATAAGGCTACTCGCTGTACGtccctgtttttgtttttttggctgtttatGTCTTCCTTTACTTCCCCTACTAATTTGGGAACCCAGCATCTTGGAGAAGTGtcaattctaaaaaaatgtttaaattattgatTAATGCCAACCCGAGATTTTCGTTACATAAAAACAGGGCAGGTCTTTTCCCCCttttttgtgaacaaaaatgtaattaaaaccaAGCTAGAGATAGCTTCCATTGCTTTTACAGGGCTAAATCAGCAGAAGTAAATAATTTGTGTTtgaacattcatttttatggttATTCAGGCTGCAGCCCCTGTTTATAAGTTTGATCAAAATCCTCTTCtgttgtatgtatgtgtgtatgtatgtatgtatgaagcATATTTAATGCATGGGGGACAGTGGACGCTGCATGTTATGTGGCTATGTATATTACCTACAATATGGAACCATGTGCTCAAATGGATACTGgagtaaaatacaaatgtatatatatgcattttatccTGCTACCCgcctgtttattatttgttgtaaatTTAAGAAGCTgcactgaataaaatgttttgtatgttcAGAGCACTCATGATGTTTGATTATGTGTTGTTAAGTGACTTTCGCTTTCAATGCACTTGATAACTCTTCATCAATTTAGAGTCATTGTATGTTATTACAGCGCTACTGTAAAATACGAACTTTAAATTTTACTAatagcaaacaaaacaattctaatattttaatcaaGTAGCC
>XM_043250135.1
CTCAATAGTTGCGTAGCGGGGGTGATGCACCGCCATGTGGTCTGATTGATGTGTCAAAGCACATCATGAGCGCTCGACTTGCAATCTTGCACACCGCAAACTGAACGACGCCGAAACAGCTCGACAAGTGGccttttgcattttcatttcattcctttttacaatttttttcacgCCTTGCTTTGCTGCCTTGTCTTTTGTCACATGGAACAAAGCGCTATGCACACCTGCCAGAGAACATAATAACGACCAGCAAACGGGGGGGTTGGCCACTGTTTAATAGAAGAGCCAGTTTTAAATGATCGGACCGATTTGGTGTGAGTTATCATCTGGAATTCCTCATCAAAACTGGGATCTATGAGCGGGAAAGCATTACTAAAGACGAAAGAAGACAAGGATGCAACCAAGGAGCCTCAGCTCAAGGGGATAGTCACCAAGCTCTACAGTCGACAAGGCTTTCATCTACAACTCCAAGCTGATGGGACCATCGATGGTACAAAAGAGGAAGATAATAGCTATGCTATTTTCAACCTCATCCCCGTTGGGTTACGAGTGGTGGCTATACAGGGTGTCCAGACCAAGCTCTACCTGGCCATGAACAATGAAGGCTACCTGTATACATCTGAGCACTTCACGCCAGAGTGCAAATTCAAAGAGTCAGTGTTTGAGAACTATTACGTGACCTACTCGTCAATGATCTATCGGCAGCAGCAGTCGGGCCGAGGCTGGTACCTGGGTCTCAACAAAGAGGGTCAAATAATGAAGGGCAACCATGTAAAGAAGACAAAGCCGGCTGCACACTTCATCCCCAAACCTCTCAAAGTTGCCATGTACAGAGAGCCGTCGCTCCACGACCTGACCGAATTCTCCCGCTCCGGAAGTGGCACTCCAACGAAGAGCCGCAGCGCCTCGGCCATGCTCAATGGCGGCAAGACTCTGAGCCAGAATGAGTCAACATAACCGCAGGGCACAACTGCGGTCTGCTGCTGTACAGCTGCTGGACTCTACCATCAACTAAACAGCACAAACGCGTTTACAAGAGTGCAGTGAAACCCTTAGCTGGTCGCTAGCTAGTGTTTCCTGAAATCACTGTGATGAGAACACAAGTGCAAACCTACATTGTACAATCTTCTGCAGGTCAACCTCGTGAGACAAACAAACCAAGCCATCTTTCTGACGTAGGGGTCTGCGTCCGTTTGCGGGCCATCCCTGTTTCCATGTGTAGCATACAGAGCTGTGGTTTTCTCCTGTGGCATTGTCACAGAATCTTCTAGAACACctacttttgtgttttgctcCATTTCTTCTTAGGGATGCCAACTCCATAGCGCTAAGTCAAGTACAACATGACAATAGCAGCTTGTGCGACCCATTTATCGGTATATAGAGGCAGAAATCCCAAAGGTCTTTGGACATATGATATAAGTATTTCAGCTCAGCTTTTTTGAGGCAGCGGTTCATTGTTGTGTGCTTTTTAGATGAGGCGTTTTTGCTCCTCgcttctctttttctgtcttttcagcTTCCCCCCACACATTGTTATTCTGCAAATTAAACAGATTTAGGGTTCAGTCTGTCTGCACACCAAAGATGTCATTAGTCTCTTTGTATGGAGGTAAGTCAATTTGTGTAATTTCAGCTCCCTCAGACAGATGGTTGAGAAAACCGCAAGAGTGAATGTCATTTAGTGAGAGGAAATGTATTCAGGATAGAATAAGGCTACTCGCTGTACGtccctgtttttgtttttttggctgtttatGTCTTCCTTTACTTCCCCTACTAATTTGGGAACCCAGCATCTTGGAGAAGTGtcaattctaaaaaaatgtttaaattattgatTAATGCCAACCCGAGATTTTCGTTACATAAAAACAGGGCAGGTCTTTTCCCCCttttttgtgaacaaaaatgtaattaaaaccaAGCTAGAGATAGCTTCCATTGCTTTTACAGGGCTAAATCAGCAGAAGTAAATAATTTGTGTTtgaacattcatttttatggttATTCAGGCTGCAGCCCCTGTTTATAAGTTTGATCAAAATCCTCTTCtgttgtatgtatgtgtgtatgtatgtatgtatgaagcATATTTAATGCATGGGGGACAGTGGACGCTGCATGTTATGTGGCTATGTATATTACCTACAATATGGAACCATGTGCTCAAATGGATACTGgagtaaaatacaaatgtatatatatgcattttatccTGCTACCCgcctgtttattatttgttgtaaatTTAAGAAGCTgcactgaataaaatgttttgtatgttcA

Function

symbol description
fgf13b Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to act upstream of or within nervous system development. Predicted to be located in several cellular components, including filopodium; growth cone; and microtubule. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including blood; nervous system; neural rod; segmental plate; and trigeminal placode. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy. Orthologous to human FGF13 (fibroblast growth factor 13).
fgf13 Enables protein kinase activator activity and sodium channel regulator activity. Acts upstream of or within MAPK cascade. Located in cytosol and nucleus. Implicated in developmental and epileptic encephalopathy.

NR:

description
PREDICTED: fibroblast growth factor 13-like isoform X1

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU113078 True 3189 TUCP 0.46 5 10267354 10277701
XM_043250135.1 False 2292 mRNA 0.44 6 10267527 10283665

Neighbor

gene id symbol gene type direction distance location
LOC122353016 slc46a3,LOC107693895,LOC107720589,LOC107701147,LOC107718743 coding downstream 76124 10184794 ~ 10191230 (-)
dchs1b LOC107718741,LOC107701146,LOC107555179,LOC108438972,LOC108277286,LOC105907404,LOC107693876,LOC107720538 coding downstream 108461 10066471 ~ 10158893 (-)
arfip2b arfip2b,LOC107718740,LOC107555180,LOC107701145,LOC107693925,LOC107557232 coding downstream 218897 10036639 ~ 10048457 (-)
fhdc3 fhdc3,LOC107693924,LOC107557231,LOC107720631,LOC107718739,LOC107701144,LOC107555182 coding downstream 231161 10028731 ~ 10036193 (-)
trim3b trim3b,LOC107701140,LOC107557229,LOC107720632,LOC107718737 coding downstream 239698 10001337 ~ 10027656 (-)
LOC122352632 LOC107720618,LOC107718749,LOC559907 coding upstream 5867 10289532 ~ 10303026 (-)
znhit2 LOC107720610,LOC107548862,LOC107693940,LOC107718755,LOC107701159,LOC107555156 coding upstream 91837 10375502 ~ 10377728 (-)
mrpl49 mrpl49,LOC107720585,LOC107693898,LOC107701163,LOC107718758 coding upstream 94199 10377864 ~ 10379018 (-)
LOC122352676 NA coding upstream 96751 10380416 ~ 10381074 (-)
LOC122352947 NA coding upstream 99011 10382676 ~ 10383332 (-)
G76421 NA non-coding downstream 13493 10253025 ~ 10253861 (-)
G76413 NA non-coding downstream 25172 10241959 ~ 10242182 (-)
G76388 NA non-coding downstream 82832 10184094 ~ 10184522 (-)
G76327 NA non-coding downstream 161175 10098265 ~ 10106179 (-)
G76324 NA non-coding downstream 243653 10023495 ~ 10023701 (-)
G76426 NA non-coding upstream 33406 10317071 ~ 10317400 (-)
G76458 NA non-coding upstream 120292 10403957 ~ 10411838 (-)
G76488 NA non-coding upstream 140950 10424615 ~ 10445156 (-)
G76489 NA non-coding upstream 152527 10436192 ~ 10460399 (-)
G76493 NA non-coding upstream 171926 10455591 ~ 10456512 (-)
LOC122353179 LOC107693906,LOC107720543,LOC107555189,LOC107701125,LOC107718772 other downstream 641949 9572372 ~ 9625405 (-)
cd209 NA other downstream 756924 9489330 ~ 9510430 (-)
G76068 NA other downstream 837554 9427962 ~ 9429800 (-)
G75913 LOC107688158,LOC107713356,LOC105014858,LOC103473696,LOC107686448 other downstream 1711266 8543097 ~ 8556088 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other downstream 1739907 8519666 ~ 8527447 (-)
G76438 NA other upstream 96431 10380096 ~ 10383309 (-)
G76498 NA other upstream 194394 10478059 ~ 10480189 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other upstream 689216 10972881 ~ 10983738 (-)
G76625 NA other upstream 733445 11017110 ~ 11038731 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other upstream 892904 11176569 ~ 11207252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_12409495_12416078 FGF13.L, FGF13A, FGF13B, FGF13 coding CI01000304 null 12408897 ~ 12416078 (-)
striped catfish (Pangasianodon hypophthalmus) fgf13b fgf13b,fgf13,fgf13a,LOC108276808,LOC105907432,LOC107693932,LOC107720625,LOC107548853,LOC107084161,LOC107560535 misc NC_047611.1 CM018557.1 254946 ~ 266773 (+)
bowfin (Amia calva) AMCG00021334 fgf13a,fgf13,LOC107658011,LOC107601138 coding CM030130.1 CM030130.1 14857234 ~ 14866579 (+)