LOC122353009 (LOC107562038,LOC107562041)


Basic Information

Item Value
gene id LOC122353009
gene name LOC107562038,LOC107562041
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14467186 ~ 14481449 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU114670
gagaatgAGCAGGACAGGTTATGTTAGCGCTCAGAGAACAGCATCTCCAGGATTCAGCTGTGTTTCTATGAAGAGTAACAACTCCATGAATCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGAGTAACAACTCCATGATTCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGATGAGTCTGCCTCGTGAATTCAGTGATGGACCTGCTGCTACCTTTGACTCTGTtgctaccagcagaaagagaaagagagcagccTCTCCACAGCAGCCCCTGATCTCAGTCATAAATCAGCGCACCTTGATCCTGTccttattccaaaatggattaaattaatttatttcctgCTGTTCACACAATACGAGCATAGCTTGGTCTGAGCAGTGTTACCTACATTAGTGTCAGGCTGCAGAACTGTGGTACAAGAAGGCACATCATTAAACATACTAGGAACATCAGTAATCATGAATTACACCTGATCTTCCGCTAAAGCACGCTGTACAGACTTATGATCAAActgacatttaatgtttttctgtgcaGAGGCCAATGAATTTCTCACATTAGAGCAAATTTTATGCAGATGCTTGCGTAATTTACTGGCATAATTTAACACGTTGATTTTGCAAATAGAAGCAAGTGCTAGCATATTTGCTTTAAGCACTTTTACTGGGCTTCTGACAGTGTGACCAAACATTACATCAGCGTGAttaaaacattgaaacattGCCTTTAACATctgatgaaaaacattaaagaacacCTTGGCTTTTGATAGGATATGCGCTACCGATCCGGGTGAGAAATATTCCAAGTTGCCAAAAGAGTTTTGAAAGGAAATGTGTGTCTTTGTCTAATTTGCATGATTTTAAGAAAATCTAAAGTAGAGAAGAACTTCACAATAGCTTTGACGACAACTGGTGCCGTGACAACTAGAATCACCTCTGGAAACCGTgtagcaacacattactggcaaCAAAAACTGGTTACCACATTTTGTTTTGACTTGAACTTGAATTGGGTggagttttcattatttttttcattttgagctGGCAAAGTATCTTTAACAAATATAAGCACCATGAAGGatgtaaaaaaatcatcagTGTCTATTTTTTGAGCTTGAGCCTGAGTGACATCACAAGCAGGAAAAGTTTCAGGATATATTTCTGACAATTCATCAGTGTGATCTGATAAAACAGGTTTGTCAAACACTTCCAACATGTAAAAAACCTTCCCACCAGCCAAATCATGACCTAGGATAAACTTAACCCTTTGGCAGGTAAACAATCACAAACACCTTCAAAACTTATACACAACCCTGACTGCAAATGGTTGTGGTATAGCGGGACTTTAACAATGCTCATCTCAACTTTGAAGGACTGGGATGTGCCAGTATCACAGAGCATTTTAACCCTTAACTGTGCTTTAGGTTTACTCCAAATTGGAAACCTATTAAAAAGGTTAGAAGCTACAGTCAGGCTTATCTGTCTAAGAGTGCAGGACTTGTGAAAACTGTAGAAGTTAAAAGCCTTAAATGTAGAGcccagttgttttctttttcaacaCCAGACAGTCCGCAATGAAATAGCCAGTcttatgacaataataatagtctTGATCTCTTTAGCCTTGGGCGGATTTGAATTTGTTCATGGTTAGACTGGTTATCAAGGGTTGCAGGAATAATCAAATTCTTGTGTCAGCACAAACTCGACCGCAAAGACAGAAGCTTGAGCCAAGAATGttactttttgttcatttaatacaTGAAATGCTCTCCAGTATAcagttaataattataatacattataaacataATACTTCCAAAGGAATTCATTCTTGCATTGTCTTCAAATAGTTACTTTACTAGACGTAGGCTGGAAAAAACAGGTTCAAAGGGGCGACAAACAGCTTTGGCTTCAGAACCCCTCAACCTCTGCAGTTCCTCTTTGCTCCTTCTTCCCAAACTCTGGGCAGGCATCTGAGACAAAGGAACCATCCTCCGTTACTTCCAGCAATTTTTGCAACAcactgttttttctttctttttcttatgcTGCTACTTTGAAACAGGAATTTGTAATACTCCACAatactaattgaatcatattttCAACATGTATCGAGCAGCTCCAAAGTAAGTGCACTAATAAAGACCTCTAAAGTAAAGTCTGCCATACATACGTCATTCAACCACTAAGACCATCAACTATCTCTTAACAATGTATATTCACTCCGCCATCAACACCAGCAGTAATAAATTTCCTGACATAAACTATCGCTGGTTATAACGCCTAGCCAGCAGATCGGAGCCATCACCAGAATACTAGC
>XM_043250844.1
gtgtgtgtgagtgagaatgAGCAGGACAGGTTATGTTAGCGCTCAGAGAACAGCATCTCCAGGATTCAGCTGTGTTTCTATGAAGAGTAACAACTCCATGAATCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGAGTAACAACTCCATGATTCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGATGAGTCTGCCTCGTGAATTCAGTGATGGACCTGCTGCTACCTTTGACTCTGTtgctaccagcagaaagagaaagagagcagccTCTCCACAGCAGCCCCTGATCTCAGTCATAAATCAGCGCACCTTGATCCTGTGTGAGTATATTCATGTAGAGCGAGACGTGTAACACAATAATGTACACAGAAAtaacaaaagtgaaaaatacaGTGCATCCGGAAAGTA
>XM_043250845.1
gtgtgtgtgagtgagaatgAGCAGGACAGGTTATGTTAGCGCTCAGAGAACAGCATCTCCAGGATTCAGCTGTGTTTCTATGAAGAGTAACAACTCCATGAATCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGAGTAACAACTCCATGATTCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGATGAGTCTGCCTCGTGAATTCAGTGATGGACCTGCTGCTACCTTTGACTCTGTtgctaccagcagaaagagaaagagagcagccTCTCCACAGCAGCCCCTGATCTCAGTCATAAATCAGCGCACCTTGATCCTGTccttattccaaaatggattaaattaatttatttcctgCTGTTCACACAATACGAGCATAGCTTGGTCTGAGCAGTGTTACCTACATTAGTGTCAGGCTGCAGAACTGTGGTACAAGAAGGCACATCATTAAACATACTAGGAACATCAGTAATCATGAATTACACCTGATCTTCCGCTAAAGCACGCTGTACAGACTTATGATCAAActgacatttaatgtttttctgtgcaGAGGCCAATGAATTTCTCACATTAGAGCAAATTTTATGCAGATGCTTGCGTAATTTACTGGCATAATTTAACACGTTGATTTTGCAAATAGAAGCAAGTGCTAGCATATTTGCTTTAAGCACTTTTACTGGGCTTCTGACAGTGTGACCAAACATTACATCAGCGTGAttaaaacattgaaacattGCCTTTAACATctgatgaaaaacattaaagaacacCTTGGCTTTTGATAGGATATGCGCTACCGATCCGGGTGAGAAATATTCCAAGTTGCCAAAAGAGTTTTGAAAGGAAATGTGTGTCTTTGTCTAATTTGCATGATTTTAAGAAAATCTAAAGTAGAGAAGAACTTCACAATAGCTTTGACGACAACTGGTGCCGTGACAACTAGAATCACCTCTGGAAACCGTgtagcaacacattactggcaaCAAAAACTGGTTACCACATTTTGTTTTGACTTGAACTTGAATTGGGTggagttttcattatttttttcattttgagctGGCAAAGTATCTTTAACAAATATAAGCACCATGAAGGatgtaaaaaaatcatcagTGTCTATTTTTTGAGCTTGAGCCTGAGTGACATCACAAGCAGGAAAAGTTTCAGGATATATTTCTGACAATTCATCAGTGTGATCTGATAAAACAGGTTTGTCAAACACTTCCAACATGTAAAAAACCTTCCCACCAGCCAAATCATGACCTAGGATAA
>XR_006251944.1
gtgtgtgtgagtgagaatgAGCAGGACAGGTTATGTTAGCGCTCAGAGAACAGCATCTCCAGGATTCAGCTGTGTTTCTATGAAGAGTAACAACTCCATGAATCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGAGTAACAACTCCATGATTCTACCTCCTGGTCTCAGTGATGTTGATGCTCAGAGAACAGCATCTCCAGGATTTAGCTGCGTGTCCTTGAAGATGAGTCTGCCTCGTGAATTCAGTGATGGACCTGCTGCTACCTTTGACTCTGTtgctaccagcagaaagagaaagagagcagccTCTCCACAGCAGCCCCTGATCTCAGTCATAAATCAGCGCACCTTGATCCTGTATtatctggctgtatggtgaaAGAGGAAGGTTGTGCCGCTCTGACATCAGCTTTGAGTTCAAACCTTTCAcccctgagagagctggacctgagtaacaatcaTCTTCAGGATTCAGGAGTCAAACTGCTCGCTgctggactgaagagtccaaactgtaaACTCAACATACTGAGATtatctggctgtatggtgaaAGAGGAAGGTTGTGCCGCTCTGACatcagctctgagttcaaacctttcacacctgagagagctggacctgagtaacaatcaTCTCAGGATTCAGGAGTCAAACTGCTCGCTgctggactgaagagtccaaactgtaaACTCAACATACTGAGATtatctggctgtatggtgaaAGAGGAAGGTTGTGCCGCTCTGACatcagctctgagttcaaacctttcacacctgagagagctggacctgagtaacaatcatctgcaggattcaggagtaaAGATACTTTGTGCTGGACTGAAGACTCCAAATCAAATCATGAT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107562038

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU114670 True 2416 TUCP 0.39 3 14474120 14481437
XM_043250844.1 False 489 mRNA 0.46 2 14476189 14481449
XM_043250845.1 False 1359 mRNA 0.40 3 14475189 14481449
XR_006251944.1 False 913 transcript 0.47 5 14467186 14481449

Neighbor

gene id symbol gene type direction distance location
LOC122352756 ift46 coding downstream 182104 14280933 ~ 14285082 (-)
LOC122352754 NA coding downstream 186298 14278117 ~ 14280888 (-)
LOC122352755 NA coding downstream 189854 14273650 ~ 14277332 (-)
LOC122352549 or110-2,LOC107741167,LOC107686205,LOC107579177,LOC107686207,LOC107589615,LOC107589600 coding downstream 394847 14071380 ~ 14072339 (-)
LOC122352546 or110-1,LOC107579177,LOC107697404,LOC107589615,LOC107686207,LOC107736199 coding downstream 397553 14068591 ~ 14069633 (-)
dhrs7ca LOC107758776,LOC107654658,LOC107552132 coding upstream 3880 14485329 ~ 14488534 (-)
si:ch211-165g14.1 LOC107726816,LOC107573383,LOC107673826 coding upstream 51038 14532487 ~ 14540838 (-)
mfsd13al zgc:171489,mfsd13b,LOC107726812,LOC107573382 coding upstream 60081 14541530 ~ 14546151 (-)
sdr42e2 sdr42e2,LOC107726803,LOC107654653,LOC107717482,LOC107552104,LOC106592406 coding upstream 73548 14554997 ~ 14568193 (-)
mosmoa c16orf52.L,c17h16orf52,C20H16orf52,LOC108258941,LOC106518731,LOC102224510,LOC105910214 coding upstream 109570 14591019 ~ 14611223 (-)
LOC122353010 NA non-coding downstream 1866 14460368 ~ 14465320 (-)
G77480 LOC107575404,LOC107692500,LOC107728752 non-coding downstream 41699 14424513 ~ 14425487 (-)
G77476 NA non-coding downstream 98631 14366281 ~ 14368555 (-)
G77472 NA non-coding downstream 105452 14361354 ~ 14361734 (-)
G77456 NA non-coding downstream 174468 14291853 ~ 14292718 (-)
G77514 NA non-coding upstream 14049 14495498 ~ 14497454 (-)
G77669 NA non-coding upstream 620700 15102149 ~ 15103569 (-)
G77672 NA non-coding upstream 657158 15138607 ~ 15139007 (-)
G77674 NA non-coding upstream 674900 15156349 ~ 15156591 (-)
G77676 NA non-coding upstream 678016 15159465 ~ 15159847 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other downstream 124174 14340046 ~ 14343012 (-)
G77443 NA other downstream 202864 14234506 ~ 14264322 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other downstream 259180 14204416 ~ 14208006 (-)
G77440 dlg1,LOC107738847,LOC107659037 other downstream 263059 14202262 ~ 14204127 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other downstream 659367 13806104 ~ 13807819 (-)
im:6904045 NA other upstream 3350 14484799 ~ 14485292 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other upstream 86881 14568330 ~ 14589899 (-)
G77671 NA other upstream 625688 15107137 ~ 15107752 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other upstream 748520 15229969 ~ 15289672 (-)
G77702 NA other upstream 876236 15357685 ~ 15358232 (-)

Expression


Co-expression Network