XLOC_006597


Basic Information

Item Value
gene id XLOC_006597
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23408029 ~ 23411631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013784
AAGACGGCTTTAAAAATCTGAATGTTGGTGTGCGATTTAGCAAATACCAGGATTCTACAATCAAATTTtggtttacacacatttttaaaatgtgccaTTGCTGCATTCTATCCACCCTATAGTACTGTAAATAGAATTGGTATATCCCAAACCAGTATGttgaaagagaaagagaatgcCAAAGGTTCCCGAATGGCTTACTATATCTGGGAAAAATTCGAAGTGTAGAAGCGTTTATGCTCTAACCtctaatattgcccacaatacattgcaggTTAGAcctgaatttgattagaactacaaactcacaagtaaaatgtgtaaacaaactacagaCATGGAGGACACAAGAGACCATCTGTCAAGTAGGCTTCTGTAAAGTTGTTTGATGGttatttaattcagttcaattcatatttatatacaatataacacttttacaatgtaaattgtgtcaaagcagcttataagttctactaaattgaaactgtgtcagttaagttttcagagtttaagttcagtttagtttagtgttgTTATTAAGATCTTACCAACTGGAGCATATTTTAACAGCATTTTCCATCTTTATCTGCAACAATGTAAACTTCTATCaagatatgtttggacattaacttctaaatgcataattacccaaagacctgaggagatttatctgcatgaaagactcaccGACGGCAGATtgtcctgctgctgcttctccaataagatAGGAAATGGTATATAAAAGTAACGTGGATTATGTGTCAAGATGATTGACAAAAGATTTAACTATTCAGCGTAACAATCTGTTAACGAGGAAAGAGTATGTCCCAAAGATTGCATACTcttgttacacactcaaaagtatatacttcACAAAAAATTACATACTTTTAGGGTGCAATTCAAATatgtgaattgggatgcagcacatGTCTACAGAgtgaaaaatacaaacaaacaaaaagatctTTGTTCTCTCTATCAGCATGTGCCAAAGAGTGATTTTATTAGATTCCAGCTGAGTAAATAGTAACTGCtttagtttaaattatttatttagataaaaaaagacaaagtAGTGCACTGAAAtgacagttttattatttttttaagcaaaaatgcatgtaaaatctTAATTGTAAAATATAGAGACCGTTCTGTGCAAACCTCTGATTGGTTTCAGGGACATACTTTGAATCCGACAGACAGATGTTGTTTCATTGGTACAGTCATAAGGAAATTGAATTTTAAAATTCAGTCTGAGCTGCGCTGATAACCTCAAGGGCACTTAGACAATGTTAAAATGCCACTTACAAAAACATGATTGGATGTGTTGAAATTTTCACTGCAAGGAGAAAAAGCACATTTAGCCGAGGCACTCCCAAGCATTAATGAGAAtgtgtttgtcataaaaaaaCTGGGGCTGGATTTTCATTACATACAACAAGCCATTGTGTGAAATTCACAAGTCTCtgtacgtgctgactgacagatAAATAATTTTTTGAAGCCTCAGGCTTTGACAGCACAGGTTCTGATGAGTAATATGTGCTGTATTTTCACACTGCTTGTAATGACATACGCAAAGCAAACTGAGTCATATGCTCACAGATGTCACAGTGGCAGAAAGCACAGAAACAAGCTGCTTTATAACTCcgaaaaaacacaagcaaaactGTTTGTGCGGAATAAAGAAATGTATGTATTTGCTTGCATGTGGTCGCATTTAGTTCAAGATTGAATTCATCATGTTAAACCTTCCCATGTAGCATTGAGGTGACACTTCATCTACAACAGCCATTTAATCCAATCATGTATCTTTTTGTGTCCTGTGGGATAAAAAGATTAAGCAGAAATAGGGTATACTGTATGACCAAAAATGCAAGACTTTAGCATTATGAGTGAGAAGGATTTAGCTGTTATTTTAAACAACGTTAGGATCAACACAGCCTTATATTACACCACAATGTGTAGTATGCCTATATTGCTATGTTGATTCTAGCATCATAATGCTGTATATACATATTATGCTTTCAGTATTGTATTTTAGgtgctctgaaaaaaaaaatcttcttggATCTTGCATCCTTTGAATGAATCAATCCAGCGTTGAAGTCAGTCTCATAAAACACTGTTCA
>TCONS_00013785
gacaaagtAGTGCACTGAAAtgacagttttattatttttttaagcaaaaatgcatgtaaaatctTAATTGTAAAATATAGAGACCGTTCTGTGCAAACCTCTGATTGGTTTCAGGGACATACTTTGAATCCGACAGACAGATGTTGTTTCATTGGTACAGTCATAAGGAAATTGAATTTTAAAATTCAGTCTGAGCTGCGCTGATAACCTCAAGGGCACTTAGACAATGTTAAAATGCCACTTACAAAAACATGATTGGATGTGTTGAAATTTTCACTGCAAGGAGAAAAAGCACATTTAGCCGAGGCACTCCCAAGCATTAATGAGAAtgtgtttgtcataaaaaaaCTGGGGCTGGATTTTCATTACATACAACAAGCCATTGTGTGAAATTCACAAGTCTCtgtacgtgctgactgacagatAAATAATTTTTTGAAGCCTCAGGCTTTGACAGCACAGGTTCTGATGAGTAATATGTGCTGTATTTTCACACTGCTTGTAATGACATACGCAAAGCAAACTGAGTCATATGCTCACAGATGTCACAGTGGCAGAAAGCACAGAAACAAGCTGCTTTATAACTCcgaaaaaacacaagcaaaactGTTTGTGCGGAATAAAGAAATGTATGTATTTGCTTGCATGTGGTCGCATTTAGTTCAAGATTGAATTCATCATGTTAAACCTTCCCATGTAGCATTGAGGTGACACTTCATCTACAACAGCCATTTAATCCAATCATGTATCTTTTTGTGTCCTGTGGGATAAAAAGATTAAGCAGAAATAGGGTATACTGTATGACCAAAAATGCAAGACTTTAGCATTATGAGTGAGAAGGATTTAGCTGTTATTTTAAACAACGTTAGGATCAACACAGCCTTATATTACACCACAATGTGTGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013784 False 2141 lncRNA 0.34 2 23408029 23411631
TCONS_00013785 True 905 lncRNA 0.37 2 23408669 23410559

Neighbor

gene id symbol gene type direction distance location
XLOC_006596 si:dkey-103j14.5 coding downstream 137453 23233956 ~ 23270576 (-)
XLOC_006595 NA coding downstream 190211 23212759 ~ 23217818 (-)
XLOC_006594 kifbp coding downstream 313023 23083858 ~ 23095006 (-)
XLOC_006593 srgn coding downstream 333575 23070581 ~ 23074454 (-)
XLOC_006592 vps26a coding downstream 340648 23058268 ~ 23067381 (-)
XLOC_006598 prim2 coding upstream 76651 23488282 ~ 23612369 (-)
XLOC_006599 map3k21 coding upstream 223186 23634817 ~ 23666579 (-)
XLOC_006600 rgs17 coding upstream 316545 23728176 ~ 23756700 (-)
XLOC_006601 phactr2 coding upstream 507849 23919480 ~ 23956361 (-)
XLOC_006602 AL772289.1 coding upstream 549661 23961292 ~ 23961406 (-)
XLOC_006471 BX537274.2 misc downstream 13143124 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22581804 825904 ~ 826225 (-)
XLOC_006585 BX530068.1 non-coding downstream 560545 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 623596 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 1212861 22191361 ~ 22195168 (-)
XLOC_006577 NA non-coding downstream 1468064 21925701 ~ 21939965 (-)
XLOC_006605 CR762497.2 non-coding upstream 715432 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 872039 24283670 ~ 24286390 (-)
XLOC_006611 NA non-coding upstream 935358 24346989 ~ 24351543 (-)
XLOC_006616 NA non-coding upstream 1161455 24573086 ~ 24574746 (-)

Expression


Co-expression Network