zgc:100918 (zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223)


Basic Information

Item Value
gene id zgc:100918
gene name zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16432527 ~ 16437594 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU115413
CGGGTGTTGAGTCAAGGGAGGGAGTGCTTGCGGCTCATTATTACAAACGGATGTGCTGAACTGTCCGTGACAACCATCCAAAAACACGCCACACGACCGAAAGAGAGCGTCCCGAGTCGATACGAGACGGCGGAGGTGTCGTGTtggcttgtttttgttgtatgaCAGCAGAAGATTGTTAAGCCGAAGCTGGGATTTCTCCTCAGAAAgcacaGTTTAGTCCACAAGGATGGCTTCTCGTAAAAAGGTGCTTCTGAAGGTGATCATTCTGGGGGATTCTGGGGTTGGGAAGACTTCTCTGATGAACCAATATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGATTTTCTTACCAAGGAGGTGATGGTAGATGACAGGCTGGTGACAATGCAGATCTGGGACACTGCAGGACAGGAGCGCTTCCAGTCTTTGGGTGTGGCTTTTTAACGCGGGGCGGACTGCTGTGTGCTGGTGTATGACGTGACCGCACCGAACACCTTCAAAACCCTGGACAGCTGGAGGGATGAGTTCCTTATTCAGGCCAGCCCTCGAGACCCAGAGAACTTCCCCTTTGTAGTGCTTGGCAACAAAATCGACTTGGAGAACAGACAGGTGACAACAAAACGAGCCCAGGCCTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAGACCAGCGCAAAAGAGGCCATCAACGTGGACCAGGCTTTCCAAACGATCGCCCGCAACGCTCTCAAACAGGAGTCTGAGGTGGAGACGTACGACTTCCCAGACCAGATTAAACTGAGAGATGACAGACCCGTGTCCTCTGGCGACAGCTGCAGCTGCTGAGATGGGACGTTTGGAGACCGAGGGGACCAGAGAGGCAGAGGAGAGCCAGCATGGGGCCGACCGAACCCCATGTGCAGAACATCCAGCATTCAGAAGAAAACACTTCCTTTCCAAACTTGTATGTAAAGAACTGTTAGGAATTTAAAGAAACTCCCTGCTACAGCATCACTTTTAATATAACTACCTTTAAGGATATTATTTCTATGAGAAAAAGATGAAACGTAATagatatttctattatttacaagtgattttttctttttgcctcttgtttgtttattccttcATCCACGCAGATCGTAGTCTTTCAGACTTGTCTCCTGCTTATATATCTCTGTCTgtgccttttaattttttttctttttttaggatGTAGAAGCAGTCACACTTCCTTTAAATTCCTTTATTTTGCCAAATCCTTTAATATGCTAAATGTAATCGATTCTTTATCtaaaaactacacacacacacacgcactcggAATAAACAGCCCAACATGACACAATATCAAAATCTTCAGTGAAATATAAGAGCTGCCGAGACcagaaagaaatattaaaagtttgTGCCTAAGGACGTCTTCTGTGTGCAGGAAGGCTGCTGGTGTCAAATGAACGTGTGAGCTCACAAATTAAGTGCAATCATTTTAACCATGCGGCATGATTCCTTTCGCTTCGAGCGAAAGCACTTCCCCAGTTTTAATGTATGAATGTAAGATTAATCATTTCTGTCTTGACCTCATGCTGTTTAATTACTCggtttacagtttatttttatgtttctgtgttctTGTAGTAGACATTTCTAACGGGCTCATCTCATTGACCAAATTATGGGTATGACGTAGGTCAAATAAAGGCACAAAATGTGAAGGAAAGCTGAAATTGAAGAGTGGGTCCTGACAACCCTTGAAtccatgtgattttttttttttaagtctttatTTCTGTCAACCAGTATTGTAAATGATTTTCATCGAAAACTTAGTGATGTCTGCCAATAGAAACACATCTGTCTCTCTTTTATAAAACAACTACCTTTCCCTGAACACCGTTAAATCATCTCTCGGTATTGTTTTATCAACAATGCTCCATTAATAAATCTTTATTCAAATGACAAACCGCCGGATCCTGTGTGTTTTGGCTTCCGTTACACCGATAAACACCAAAGGAACGGTTCAACCGAACAGCTTTCTAAAACAGTACTCGCCCATAAGCCATCCAAGATGAGTTTGTTCTTCAGACCAGGTTTAATTTTCAAGTGTAACATTACATCTCTTGATCCCCTATGGATCCTCTTCACTAAACTGGGGCCGGGTCCAAATAGCTGTCCAAAATGCATCATAATCTAATTAACCATCCTTGTCCTCTTAAATCAAAATTcactaacatttttattttgatcagtTTTTGCTTGTATACTGATTTTTCCTCATAATTCAGataaaacaactttttcaaTGGAGAGAGCAGTATTATGTATTAGTTTCTTATAAACAACTTTTCACTTGACAAACTGAAGGACTGGAGTTCGGTGGATtgcttgtgaattattgtgatttttttgtcagatggttggactctcattctgacggcacccattcactgcagaagatccagGCATCTTGACTTGACACATTATGAAGAGCTGCATTTCTCAAACagcaaaagcaaattatttatgctttttttttttaagagtctTTGCAGTCCATACCAGACACTTGGCAGATGATGTTTCTCTTGGATTTCTGAATAAAAGGAGCAAACGGTATCTGCATCCGTATTTCTCCTTCTATTTGTCTCTTTTTAGAGAGTCATTGAGAAACAGGCGGACCAAATGCATCCATAGTCTCCAACACTAGAGACAAATGGTCCAAGAATGAGCTTACAGAAACACGAAGAATGCGGGCTTCATCTGCA
>XM_043250526.1
AAACATGACGGGTGTTGAGTCAAGGGAGGGAGTGCTTGCGGCTCATTATTACAAACGGATGTGCTGAACTGTCCGTGACAACCATCCAAAAACACGCCACACGACCGAAAGAGAGCGTCCCGAGTCGATACGAGACGGCGGAGGTGTCGTGTtggcttgtttttgttgtatgaCAGCAGAAGATTGTTAAGCCGAAGCTGGGATTTCTCCTCAGAAAgcacaGTTTAGTCCACAAGGATGGCTTCTCGTAAAAAGGTGCTTCTGAAGGTGATCATTCTGGGGGATTCTGGGGTTGGGAAGACTTCTCTGATGAACCAATATGTCAACAAGAAGTTCAGCAATCAGTATAAAGCCACCATCGGCGCAGATTTTCTTACCAAGGAGGTGATGGTAGATGACAGGCTGGTGACAATGCAGATCTGGGACACTGCAGGACAGGAGCGCTTCCAGTCTTTGGGTGTGGCTTTTTAACGCGGGGCGGACTGCTGTGTGCTGGTGTATGACGTGACCGCACCGAACACCTTCAAAACCCTGGACAGCTGGAGGGATGAGTTCCTTATTCAGGCCAGCCCTCGAGACCCAGAGAACTTCCCCTTTGTAGTGCTTGGCAACAAAATCGACTTGGAGAACAGACAGGTGACAACAAAACGAGCCCAGGCCTGGTGTCAGAGCAAAAGCAATATCCCGTACTTTGAGACCAGCGCAAAAGAGGCCATCAACGTGGACCAGGCTTTCCAAACGATCGCCCGCAACGCTCTCAAACAGGAGTCTGAGGTGGAGACGTACGACTTCCCAGACCAGATTAAACTGAGAGATGACAGACCCGTGTCCTCTGGCGACAGCTGCAGCTGCTGAGATGGGACGTTTGGAGACCGAGGGGACCAGAGAGGCAGAGGAGAGCCAGCATGGGGCCGACCGAACCCCATGTGCAGAACATCCAGCATTCAGAAGAAAACACTTCCTTTCCAAACTTGTATGTAAAGAACTGTTAGGAATTTAAAGAAACTCCCTGCTACAGCATCACTTTTAATATAACTACCTTTAAGGATATTATTTCTATGAGAAAAAGATGAAACGTAATagatatttctattatttacaagtgattttttctttttgcctcttgtttgtttattccttcATCCACGCAGATCGTAGTCTTTCAGACTTGTCTCCTGCTTATATATCTCTGTCTgtgccttttaattttttttctttttttaggatGTAGAAGCAGTCACACTTCCTTTAAATTCCTTTATTTTGCCAAATCCTTTAATATGCTAAATGTAATCGATTCTTTATCtaaaaactacacacacacacacgcactcggAATAAACAGCCCAACATGACACAATATCAAAATCTTCAGTGAAATATAAGAGCTGCCGAGACcagaaagaaatattaaaagtttgTGCCTAAGGACGTCTTCTGTGTGCAGGAAGGCTGCTGGTGTCAAATGAACGTGTGAGCTCACAAATTAAGTGCAATCATTTTAACCATGCGGCATGATTCCTTTCGCTTCGAGCGAAAGCACTTCCCCAGTTTTAATGTATGAATGTAAGATTAATCATTTCTGTCTTGACCTCATGCTGTTTAATTACTCggtttacagtttatttttatgtttctgtgttctTGTAGTAGACATTTCTAACGGGCTCATCTCATTGACCAAATTATGGGTATGACGTAGGTCAAATAAAGGCACAAAATGTGAAGGAAAGCTGAAATTGAAGAGTGGGTCCTGACAACCCTTGAAtccatgtgattttttttttttaagtctttatTTCTGTCAACCAGTATTGTAAATGATTTTCATCGAAAACTTAGTGATGTCTGCCAATAGAAACACATCTGTCTCTCTTTTATAAAACAACTACCTTTCCCTGAACACCGTTAAATCATCTCTCGGTATTGTTTTATCAACAATGCTCCATTAATAAATCTTTATTCAAATGACAAA

Function

symbol description
zgc:100918 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in endosome to lysosome transport and phagosome-lysosome fusion. Predicted to be active in late endosome; lysosome; and phagocytic vesicle.

NR:

description
ras-related protein rab7-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU115413 True 2769 lncRNA 0.42 6 16432527 16437586
XM_043250526.1 False 1975 mRNA 0.43 6 16433329 16437594

Neighbor

gene id symbol gene type direction distance location
stc1l stc1l,LOC107689312,LOC107718700,LOC107588987,LOC107658607,LOC107758648,LOC107602071 coding downstream 30993 16398853 ~ 16401534 (-)
march5l march5l,LOC107718703,LOC107689266,LOC107602066,LOC107658605,LOC107588990 coding downstream 86704 16342029 ~ 16345823 (-)
tcf7l1a tcf7l1a,LOC107602061,LOC107558109,LOC107658535,LOC105912913 coding downstream 148767 16256279 ~ 16283760 (-)
dusp11 dusp11,LOC107602062,LOC107758654,LOC107689237,LOC107558079,LOC107565330 coding downstream 188494 16240176 ~ 16244033 (-)
stambpa stambpa,LOC107758608,LOC107658597,LOC107558102,LOC107746197,LOC107689905,LOC107602045 coding downstream 193458 16232746 ~ 16239069 (-)
LOC122352454 wdr45,LOC107658559,LOC107689948 coding upstream 726 16438320 ~ 16442017 (-)
G78010 NA non-coding downstream 36882 16394214 ~ 16395645 (-)
G77980 NA non-coding downstream 52976 16374220 ~ 16379551 (-)
G77979 NA non-coding downstream 79479 16351397 ~ 16353048 (-)
G77947 LOC107689250,LOC107689777,LOC107602036,LOC107758655,LOC107602063,LOC107758576 non-coding downstream 180334 16245655 ~ 16252193 (-)
LOC122353043 NA non-coding upstream 58383 16495977 ~ 16497273 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other downstream 255416 16172478 ~ 16177111 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other downstream 375220 16030527 ~ 16057307 (-)
LOC122352931 LOC107758671,LOC107689893 other downstream 410753 16016671 ~ 16021774 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 535295 15892644 ~ 15897232 (-)
G77702 NA other downstream 1074295 15357685 ~ 15358232 (-)

Expression


Co-expression Network