rassf6 (LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501)


Basic Information

Item Value
gene id rassf6
gene name LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2789553 ~ 2796224 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249795.1
caaagggCTGAATTTTTCTCTTTACTGAACACCTACAACTGCTTTCTTAAAGACAAATCACACCTGCAGCTCACCGTTCAGGAGAAAGCAGGGAAGGTGACATTCGAAGGCAATCTTGTCATTTCCTGGGGAGTCAAGAAACCCATTCGGTTACAAATACAAGATGAGAAACAGATTTTTCCAAATGAGTCTTCAGTCAAGTCACCGGATCCCGTCAGTCCGCTTGGAAACAAAAGGGGAATGACACGATGGGGAGAGTTTGATGATCTTCATCATATTGATGAACTGGAAGAAGCTGAATACACAAAACCTGACAATCCACCTGAAGACTACATTGAATATGAGAGCAAGACGTTACGACCTTCCCGGCCTGTGGCGACCGGTGAAGAAAGTTCTTATCTGATCCGTACCATGAGTGACGCATCGCTGGTGAAAATGAGGGTGAAGAGTAAGAAGATGGTGGAAAGGCAGAAGAACAGAAACCATCGCTTCTCCATCAACGGACACTTCTACAACTACAAGacaTCTGTTTTCACACCCTCATTTGGTGCCACCACAAATGTGCACATTAACAGCAAGATGACAACACAAGAGGTTGTTACACAGCTTCTTCAAAAATTTAAAataGAAAACACTCCAAATGAATTTGCCCTGTACTGCATTCATCAAAGTGGAGAAAAGCGAAGGTTGAGCAGTTCAGACCTGCCACTGTGGGAACGTCTTCTACAGGGACCATCAAACAGCATCATGAAAATGTTCCTCATGGACGCAGACGAACAGGAAATTAGCCTTGATGTAGCTCAGTACCTCAATTTAGAGATGCCGATTTTGAAGGTAATTCTGCAGAAGCTGGAAGAGCAAGAGAACCAAGAAGTACAAAGAATAATTACAAAatataaaaaggaaagaagtGTCTTGTTGCAGTGCTTGAAAAAAAAGATGCCGTTTAAAACAGAGACAACTGTATAAATGAAGTCTTGGCAACTGGAAACTGTTTCCAACTGTTGAGATGTCAACCACAGAGTAAACAGGGAAAAGGAAAATTAAATGGAAAGTGAGCCTTCAGGACTACAAACCAGAAATCAGGATATATAACTTTTCGTGCATATATAACTTTTCGTGCATAGCTTTACTGTTAAGTTTGTGGttgtaatgtatataatgtaaaattgttttcacataaatggaattacaatatttatcatgtgagcaaataaaatactgatatttaaCTTTTGTGAA

Function

NR:

description
hypothetical protein EH28_20068

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K09854 RASSF6; Ras association domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249795.1 True 1242 mRNA 0.40 9 2789553 2796224

Neighbor

gene id symbol gene type direction distance location
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding downstream 1776 2782151 ~ 2787777 (-)
sigmar1 sigmar1,LOC107653128,LOC107573076 coding downstream 425989 2360768 ~ 2363564 (-)
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding downstream 429420 2351663 ~ 2360133 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding downstream 560563 2198983 ~ 2228990 (-)
parm1 NA coding downstream 603510 2181795 ~ 2186043 (-)
musk musk,LOC107653500 coding upstream 621 2796845 ~ 2808986 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding upstream 33753 2829977 ~ 2850728 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding upstream 102127 2898351 ~ 2964433 (-)
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding upstream 371499 3167723 ~ 3216811 (-)
LOC122352385 LOC101886557 coding upstream 463453 3259677 ~ 3260615 (-)
G74436 NA non-coding downstream 8037 2780642 ~ 2781516 (-)
G74367 NA non-coding downstream 329401 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 334691 2453158 ~ 2454862 (-)
G74345 NA non-coding downstream 438887 2350461 ~ 2350666 (-)
G74346 NA non-coding downstream 439862 2349335 ~ 2349691 (-)
G74455 NA non-coding upstream 93221 2889445 ~ 2889948 (-)
G74459 NA non-coding upstream 253008 3049232 ~ 3049518 (-)
G74533 NA non-coding upstream 513563 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 654313 3450537 ~ 3454994 (-)
G74551 NA non-coding upstream 791211 3587435 ~ 3587894 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 22358 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 592124 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 942651 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1301545 1483399 ~ 1488008 (-)
G74031 NA other downstream 1315675 1466751 ~ 1473878 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 541115 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 805388 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1109390 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2223083 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3741898 6538122 ~ 6540973 (-)

Expression


Co-expression Network