musk (musk,LOC107653500)


Basic Information

Item Value
gene id musk
gene name musk,LOC107653500
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2796845 ~ 2808986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249796.1
ATGAGACCTGAAGTCCAGTCTGGCCTTGCACCCAGAATCACAACGCTGCTTGAGACAGTGGACGCCTCTCTGGATCATAACGCTACTTTCATCTGTGAGGTTGATTCGTATCCTCAAGCTGATATCACATGGACGCGTAACAACTACCCCATACGGTATTACGATTCCAGATACGTCATACGAGAAAATGGCCAAATACTGATCATTCCCAATGTAAAGGATTCTGACAACGGAGAGTACTGTTGCACTGCTAATAATGGGATTGGAGAACCGGCCAAGAGCTGTGGAGCTTTACAGCTGAAGATGAagccTCAGATCAAAAGACATCCTACTAACATGACACTGATCGTTGAGTCCAAAGCAGTGCTGCCGTGTTTAACGTTAGGATATCCCAAACCCGACATATCCTGGATTAAAGAAGATGATTTGATAAAGGTTAATAGTCGTATATCAGTTTTGGAGTCTGGCTCCTTAAAAATTAACAACATCAAGAAAGAGGACGCTGGACAGTATCGGTGCGTGGCCAGGAACAGTTTTGGAATCATCTACTCCAAACCAGTCACTATTGAAGTACAAGCTCCTGCCAAGATACTGAAAGTTCCCAAAGAGAAGAAAGTTCAGATCGGATCAGAGGTCACGCTGGAGTGTAACGCCACGGGCAACCCAATCCCATCCATCACTTGGCTTGAAAACGGCAACACGATTTCCGGTGCGTCAGTGGAGGAGACGCTGGTGGAGGAAGTCATCGTGTCTGTTCTGCGGGTGGTGGTTCATAAACCTGCTCTCTACACCTGTCAGGCTACTAACCAGCACAGCGCAGGAGCCAACACCGTCAAAGCCACTGCCAAAATAACTGTCTCAGGTGAGCTACTGCAACTGTACAAAGGCAGCGCTGGCTACTGCAGCACATACAGAGGCGACGTGTGCCGGAAAGAGCTTCGTCTGGACTCGCTGGTGTTTTTCAACTACTCTCTACCGAACCCGGAGGACGCTCAGGAGTACCTGGCCCAGAGCGCATGGGGCGAGCTGGACGGGGTGAGCTCGTTCTGCAGGCCTGCGGCCAGATCGCTGCTCTGTCACGCCACCTTCCAGGACTGCAACCCGTCTGGACTCGGACCAGCACCCAAACCTGTCTGCAGGGAGCACTGTCTGGCAGTGAAAGAGCTGTACTGTTATAAGGAGTGGCGTTCTGCTGAGGAAAGATCTCATCAAGGGTTCCCACATGGCATCACTCTCCCAGAATGCATCTCTCTACCCAGCCAACGAGCAGATCCATCTTCATGCACAGCGGTTCCTTACGTTGATCTTAATAAAGGCCAAGTTACAACAACATGTTACAATGACAAAGGAAGATTTTACCAAGGAACTCACAACACGACAGCATCTTCCATTCCCTGTCAACGATGGAACCGGCAGGATCCCCATCAACATAGACTGTCTATAGATGTGATTCCTGAGTTGCGAAATGCAGAAAACTACTGTCGTAACCCAGGAGGAGAGAGTGAAAGGCCATGGTGCTACACCACAAACCCTAATGTGCGCTGGGAGTACTGTCTGGTTCCCAAATGTGGAGAAGttatgaGTGTGAAGACTGCACCCTCCATTACAAAACCGGTCCAGATTTACCCACCTCCTTCTGTGTCTACAGCCTACTCTATGAGCgttatcattttaatcatttctggCTTTGCTGGGGCGGCCTTCTTTACCATACTCATCCTCATGTGCCacaggagaaagaaaatgtgGCAAAAGAGGAAAAGTAGGGTGCTGGATACGCCTACTCTGACCACCCTACCCTCAGAGCTCCTGCTGGACAGACTTCATCCCAACCCCATGTACCAACGACTGCCTCTCCTTCTCAACTCTAAGCTCCTCAGTCTCGAGTATCCACGCAACAACATTGAATATGTCCGTGATATTGGAGAGGGGGCCTTCGGTAGGGTGTTTCAGGCAAGAGCCCCTGGTCTTTTGCCAATGGAGCCATTCACCATGGTGGCAGTGAAGATGCTGAAGGAGGAAGCCTCGGCTGATATGCAGAATGACTTTCAAAGAGAAGCTGCACTCATGGCTGAGTTTGATCACCCCAACATTGTCCGTCTCCTGGGAGTTTGTGCGGTGGGGAAACCCATGTGTCTCATGTTTGAATACATGGCCTATGGGGACTTGAATGAATTTCTTCGACAGCGCTCTCCAACCCAGCAGCCCAGTCTAAGCCGGGATACCTTGACGTGCAGCAGTCTCGTGTCAGAACCTGAGCATTACCCACCCCTCAGCTGCCTGGAGCAGCTCTCCATTTCCAAACAGGTGGCGGCAGGAATGGCGTACTTGTCGGAACGCAAGTTTGTGCACCGTGACCTAGCTACCCGCAACTGTTTGGTCGCCGAAAACCTGGTTGTGAAAATTGCCGATTTTGGTCTCTCGCGCAACATCTATGCGGCAGATTACTACAAAGCCGGTGAAAATGACGCCATCCCGATTCGCTGGATGCCTCCTGAATCTATCTTCTACAATCGATATACAAGCGAGTCAGATGTTTGGGCTTATGGCGTGGTTTTATGGGAAATCTTCTCATATGGCATGCAGCCATACTACGGCATGGCCCATGAGGAGGTCATTTACTATGTAAGAGATGGAAATGTTCTCGCCTGTCCAGAAAACTGCCCACAGGAGCTGTATAACCTCATGCGTTTGTGTTGGAGCACTCATCCCACTGACCGGCCTAGTTTCGCCAGCATTCACCGTATCCTGGAAAGAATGCATGAACAGATGCTTCAGTCTGGCCTTTCTTGAAGATCTCTAAAAATGCTCTAATCTTTACGGAACTCATTAGAATCCCAATAGATATTAAAGAaggataaaacattttaaggtaTCTGCAAGAGCTGAGGAAATCCCAGAAAATCTTTAAGTGCCCACAAATACTCAAGAACCCAGAGGAACATTGAGGAATGTGTAAGACGCGTGAAATGACTAAAAAGGCTCTTGTGCTTTAAAGAATACTGATCCCTCAAATTCTCTCTGAAGATGAGTTTGCTTGCATCTGTTCAAAGGATCtcagttgttttctttcaatGACGCAGGTGTATGGCAGACATCAGATGAGTGCTAGTCAGGGTTTGAGGAGATTCATATTAACAGGATGAATGAAGGTTAACATCTAGTAATAAGGTAGATGTAGTGCAGTCACTGCAAGAATCTAGACTGAAATCTCTGCAAGCAGAGACACAGTATACATGCCTGATATTTGTACTTTTCATTGCTTTTGGATCTATTTTGAGTAAAAACTGAGAGTTACATGCATCTGGTAGTAACtttctttgaaaaagtaactatTTTTCAAGGTAAGTTGCAATTAACTAAttatagctacatttaaatttactcaactaaaataaattgattgcaaccacttatatttaaaaaagttaattcaataaatcatttttagtgCATTGTGCTCCAAGCAGCAGAACgttgtcattgtttttaaattggaaacattaaaacaaaatagcttATTCCAAA

Function

symbol description
musk Enables identical protein binding activity. Acts upstream of or within generation of neurons and neuromuscular junction development. Located in postsynaptic membrane. Is expressed in adaxial cell; musculature system; pectoral fin; and somite. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 9 and fetal akinesia deformation sequence syndrome 1. Orthologous to human MUSK (muscle associated receptor tyrosine kinase).

NR:

description
muscle, skeletal receptor tyrosine-protein kinase

GO:

id name namespace
GO:0051124 synaptic growth at neuromuscular junction biological_process
GO:0071340 skeletal muscle acetylcholine-gated channel clustering biological_process
GO:0030517 negative regulation of axon extension biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05129 MUSK; muscle, skeletal, receptor tyrosine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249796.1 True 3528 mRNA 0.47 16 2796845 2808986

Neighbor

gene id symbol gene type direction distance location
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding downstream 621 2789553 ~ 2796224 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding downstream 9068 2782151 ~ 2787777 (-)
sigmar1 sigmar1,LOC107653128,LOC107573076 coding downstream 433281 2360768 ~ 2363564 (-)
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding downstream 436712 2351663 ~ 2360133 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding downstream 567855 2198983 ~ 2228990 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding upstream 20991 2829977 ~ 2850728 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding upstream 89365 2898351 ~ 2964433 (-)
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding upstream 358737 3167723 ~ 3216811 (-)
LOC122352385 LOC101886557 coding upstream 450691 3259677 ~ 3260615 (-)
snx30 snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846 coding upstream 765310 3574296 ~ 3586506 (-)
G74436 NA non-coding downstream 15329 2780642 ~ 2781516 (-)
G74367 NA non-coding downstream 336693 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 341983 2453158 ~ 2454862 (-)
G74345 NA non-coding downstream 446179 2350461 ~ 2350666 (-)
G74346 NA non-coding downstream 447154 2349335 ~ 2349691 (-)
G74455 NA non-coding upstream 80459 2889445 ~ 2889948 (-)
G74459 NA non-coding upstream 240246 3049232 ~ 3049518 (-)
G74533 NA non-coding upstream 500801 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 641551 3450537 ~ 3454994 (-)
G74551 NA non-coding upstream 778449 3587435 ~ 3587894 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 29650 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 599416 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 949943 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1308837 1483399 ~ 1488008 (-)
G74031 NA other downstream 1322967 1466751 ~ 1473878 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 528353 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 792626 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1096628 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2210321 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3729136 6538122 ~ 6540973 (-)

Expression


Co-expression Network