LOC122352385 (LOC101886557)


Basic Information

Item Value
gene id LOC122352385
gene name LOC101886557
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3259677 ~ 3260615 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249800.1
ATGAGATTATTGCATGGTGCAGAGAAAAACGTTGAGTTGGACAGAGTTCTTATTTTAAGCAAGGTGCCTACAGACTGTGATGACAGAGTAGTCTATGATGTGCTGGATACTGTTCTGGGGATTGGGAAATGCAAAGTGCTTGATCGTCACTCTGATGAAACTAAGCaatatcagtttattttgattgaaaTAGCTTGTAGCATCTCCGAGATATCTATTCCTTCAGAGATTGGAGGACCTGAGGTTGGTCCTGGTACACGCATGGTCGTTCATGTAGCAGCTGAAACCCCTaagcagagagaggaagagttCCAGTCTAAATTGATCTTTTTCCTCCAAAAAGAGGGCAAATCATTAGCTGACATCCCAAGTGTTGTTTCCCCTGCACCTGACCTCAACACTAAATTAGTTGATGCCATAAACTCTCTTGTCCAAACGTGTCATGTGGCTTCATCAGAGGAGAGAGTGGGATACAGAAGGCTGCGTCCTTTCTCAGGATTCATACCAACTCCTCCTGGGGAAGATGAGTATGAGGTTTGGGTAGAGCAGACTACCCACATTCTGGAAGAATGGCAGTGTTCTGATAATATCAAGAAGCAGAGACTTGTAGAGTGTCTCAGAGGTCCTGCAGCCGATATTGTTAGATTTGAAAAGACTGGAAACCCAACTGCTACTTTCAGTGATTATCTCAGTGTGCTAGAGTCAACATTTGGCACTACTGAGGATGCTGCTGATTTGATGTTAAGGTTTCGGAGCACTTACCAGAATGAGGGAGAAAAGCTCTCCGCCTACATACTGAGGTTGGACAGGATGTTGCACAGTATGCTAAGGAAGAAAGGCATAGAATATTCTGCCCTGAATCATCTTGAATCACGGCAGATTGTCAGAGGTGCCCTGTCAAGTGATCTGAGTGGCTATGCGGCTGAGGATGACCCATAA

Function

NR:

description
paraneoplastic antigen Ma1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249800.1 True 939 mRNA 0.45 1 3259677 3260615

Neighbor

gene id symbol gene type direction distance location
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding downstream 42866 3167723 ~ 3216811 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding downstream 295244 2898351 ~ 2964433 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding downstream 408949 2829977 ~ 2850728 (-)
musk musk,LOC107653500 coding downstream 450691 2796845 ~ 2808986 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding downstream 463453 2789553 ~ 2796224 (-)
snx30 snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846 coding upstream 313681 3574296 ~ 3586506 (-)
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding upstream 329652 3590267 ~ 3594821 (-)
hnrnpdl hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490 coding upstream 347352 3607967 ~ 3612283 (-)
tmem150c tmem150c,LOC107558260 coding upstream 356900 3617515 ~ 3625783 (-)
sec31a LOC107715884,LOC107702588 coding upstream 383454 3644069 ~ 3663881 (-)
G74459 NA non-coding downstream 210159 3049232 ~ 3049518 (-)
G74455 NA non-coding downstream 369729 2889445 ~ 2889948 (-)
G74436 NA non-coding downstream 478161 2780642 ~ 2781516 (-)
G74367 NA non-coding downstream 799525 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 804815 2453158 ~ 2454862 (-)
G74533 NA non-coding upstream 49172 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 189922 3450537 ~ 3454994 (-)
G74551 NA non-coding upstream 326820 3587435 ~ 3587894 (-)
G74574 NA non-coding upstream 438990 3699605 ~ 3700769 (-)
G74614 LOC107715880,LOC107702582,LOC107558262,LOC107560412,LOC107670041,LOC107737037 non-coding upstream 519444 3780059 ~ 3834370 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 492482 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1062248 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 1412775 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1771669 1483399 ~ 1488008 (-)
G74031 NA other downstream 1785799 1466751 ~ 1473878 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 76724 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 340997 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 644999 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 1758692 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3277507 6538122 ~ 6540973 (-)

Expression


Co-expression Network