LOC122352396 (tln1,LOC107715875,LOC107670039)


Basic Information

Item Value
gene id LOC122352396
gene name tln1,LOC107715875,LOC107670039
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 4590288 ~ 4627041 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249807.1
ATGAGAGTGGACGCGAAGACCAAAGAAGTGATGCAGGAATGGAGTCTGACCAACATCAAGCGCTGGGCGGCTTCTCCCAAAAGCTTCACCCTGACCACTGAAGGAGAGCAGATTGCACAACTCATCGCTGGTTACATCGACATCATTCTCAAAAGGTCAACAGTTCTTCAGCAGCAGTTTAATAAAGTTGTGAAAGTGGAAGCGGGCTCCGTTGCTCTGCCGGCCATCATCAGCTCTGGTGCAGGTGGTCAGAGGAGCTTTCAAATGGGCTCCATGCCACAGGCCAAACAGCACATCACCAGTGGGCAGATGCACAGAGGACACATGCCGCCTCTGACCTCAGCTCAGCAGGCTTTGACCGGCACCATTAACTCCAGTATGCAGGTGCGGTACAAGCAGTTCAGGCCCTCTCTTGATGAGTTTGGCGCCCTGCCTCCACTGGGCACTGATGCGGCCTCTCAAGCATGGAGGAAGAACAAAATGGATGAGTCCAAACATGAGATTCATTCTCAGGTGGACGCCATAACTGCGGGAACTGCCTCTATGGTCAATCTGACTGCAGGAGACCCAGCAGAGACGGATTACACCGCTGTGGGCTGTGCAGTCACCACCATCTCCTCCAACCTGACCGAGATGTCTAAAGGTGTGAAACTGTTGGCAGCGCTGATGGAGGACGAGGGAGGAAATGGCCAGCAGCTTTTGGGTGCTGCCAAGAACCTGGCGTGCGCTGTGTCCGATATGCTCAAGACCGCTCAGCCCTCTAATACTGAGCCACGACAGAACCTCCTGCAAGCAGCGGGTAATGTAGGTCAGGCCAGTGGTGAACTCCTGCAGCAGATCGGAGAGTCTGATGCTGATCAGCACTTCCagTCTGTAGGTACAGCAGCATTCACACACTCCAGACGGACACGCTATAGTCAAATGCTGGACATGTTGATGCAGTTGGCAAAGGCTGTGGCTAATGCAGCCGCTCTGGTGTTAAAAGCCAAGAATGTGGCTCAGAAAACAGAAGATTCAGCTCAACAGAACCGAGTGATTGCCGCTGCCACCCAGTGTGCCCTGTCCACGTCACAGCTTGTGGCCTGCACCCGAGTGGTGGCTCCCACCATCAGTTCCCCTGTGTGTCAGGAGCAGCTCATCGAGGCCGGGAAGCTGGTGGCTAAGTCTGTGGAGGGTTGCGTGGAGGCGTCACAGGGCGCGACCAATGACGAGCAGCTGCTCAAACAGGTGGGTGTGGCCGCCACAGGTGTCACTCAGGCTCTCAACGAGCTGCTGCAGCATATCAGACAGTATGCCAGCGGAGGACAGCCAATCGGGGGGCACGGAGAGGCCACTGACCGCATCCTGGATGTGACCGATAACATCTTCAGCTCCATGGGAGACGCAGGGGAGATGGTGCGACAGGCTCGGATCCTTGCTCAGGCCACCTCAGATTTAGTCAATGCCATCAAAGCCGACGCGGAGGGTGAAACCGACCTGGAGAACTCCCGCAAACTTCTGTCTGCTGCCAAACTCCTGGCTGATGCCACCGCCAAGATGGTAGAAGCTGCGAAGGGTGCGGCTGCTAACCCTGACAGTGAGGAGCAGCAGCAGAAGCTGCGTGAAGCTGCGGAGGGTCTGCGCATGGCCACCAATGCTGCTGCACAGAACGCCATTAAAAAGAGGCTGGTCAACAAACTGGAGAATGCAGCCAAACAGGCGGCTGCAGCTGCCACTCAGACGATTGCTGCCGCGCAGAGATGCCGCCTTTCCAACAAGAACCCTGCTGCCCAGCAGCAACTCGTGCAGAGCTGCAAGGTGGTGGCAGATCAGATCCCTCAGCTAGTTCAGGGTGTGAGAGGAAGTCAAGCTCAGCCTGACAGCCCCAGCGCCCAGCTCGCCCTGATTGGAGCCAGTCAGAACTTCCTCCAGCCCGGAGCGAAAATGGTGACTGCAGCAAAAGCCACGGTTCCCACCATCAGTGACCAGGCATCTGCCATGCAGCTCAGTCAGTGCTCCAAAAACCTGGCTAGCGCTCTCGCTGAGCTGCGCACCGCCGCACAAAAGGCTCAGGAAGCATGTGGTCCTCTGGAGATTGATAATGCTCTCACAATGGTACGAGGGCTGGAGAGGGACATGCAGGAGGCCAAAGCTTCAGCTGCTGAAGGCAAACTCAGACCCCTGCCTGGAGAAACGctggaGAAGTGTTCTCAGGATCTGGGCTCTAGCACTAAAGCCGTGAGCTCTGCTATCGCTCAGCTTCTCAGTGAAGCCACCCAAGGCAATGAGAACTACACAGGTATGGCTGCTCGTGATGTGGCTCAGGCTCTGCGTTCACTGGCTTCGGCTGCACGTGGAGTGGCCGCCAACACGGAGGACCCTCATGCCCGTAATGCCATGCTGGACTGCACCGCAGATGTCATGGACAAATCAGCCAGCCTGATCGAGGAGACCAAGAGAGCCATCGCCAAACCGGGAGACCCTGACAGCCAACAGAGACTGGCCCAGGTAGCTAAGGCAGTGTCTCAGGCTCTGAACCGCTCCGTAAACTGTCTGCCGGGGCAGAGAGACGTGGATAATGCCATCAGAACTGTAGGAGAAGCCAGCAAGAAACTCCTGTCTGATAAATTCCCAGTGAGCGGGAAGAGTTTCCAGGAGGCTCAGGCGAATCTGAACGAGGCAGCAGCTGGACTGAACCAGTCAGCCAATGAGCTGGTGCAGGCGTCACGCGGCACCACCCAGGACCTGGCAAAAGCCTCCGGGAAGTTCGGACAAGACTTCAATCACTTCCTGCAGGCTGGAGTGGACATGGCTGGACAATCCCAGTCTAAAGAGGACCAGACTCAAGTGGTTACCAACCTTAAGACCATCTCCATGTCCTCCAGCAAACTTCTGCTGGCTGCTAAAGCTCTGTCCACAGACCCCAACTCACCCAACCTGAAGAACCAGCTAGCTGCTGCCGCTCGCGCGGTGACAGACAGCATTAATCAGCTGATCAGCATGTGTACCCAGCAGGCTCCGGGACAGAAGGAGTGTGACAACGCTCTCCGTGAGCTTGAGACGGTTGGAGGAATGCTGGAGAATCCCACAGAAGCCGTCAATGATTTGGGCTACTTTGACTGCATTGACAGTGTGATGGAGAACTCAAAGGTTTTGGGTGAGGCTATGGCTGGCATTTCCCATAATGCCAAGAACAGTAACTTGCCAGAATTTGGAGACTCGGTCAGTTCAGCATCTAAAGCGCTGTGTGGTCTCACTGAGGCAGCCGCTCAGGGGGCGTATCTAGTGGGTGTGTCTGACCCGAACAGTCACGCTGGGCAGAAAGGGCTTGTGGACCCCTCACAGTTCGCCAGAGCCAAACAGTCAATCCAGATGGCCTGTCAGAACCTAGTGGACCCAGCCTGCACCCAGTCTCAGGTCCTCTCTGCTGCCACGATTGTTGCCAAACATACTTCAGCCTTGTGCAACGCCTGTCGACTCGCCTCCTCCAAAACATCCAACCCAGTTGCTAAGAGACAGTTCGTCCAGAGTGCCAAAGAGGTGGCCAACAGCACCGCCAACCTCGTCAAGTCTATCAAAGCTCTTGATGGGGCCTTTAACCAGGAGAACAGACAAAAGTGTAAGGAAGCCACTGGGCCGCTCATCGAGGCTGTGGATAACCTGACCGCCTTCGCTTCAAACCCAGAGTTTGCTAGCGTACCTGCACAGATTAGCCCCGagGGTCTGGCAGCAATGGAGCCTATCGTAGCGGCCGCTAAGACCATGCTGGAGAGCTCTACAGGCCTGATTCAGATGGCCCGTTCACTGGCCGTCAACCCTAAAGACCCGCCCAAATGGTCTGTGCTGGCCGGACACTCTAGAACAGTGTCTGACTCCATCAAGAAACTCATCACTAACATGAGGGAGAAGGCTCCAGGTCAGAGGGAGTGTGATGATGCCATTGAGGTTCTTAATAACTGCATCCGTGAGGTGGACAAGGCGTCTCTGGCAGCAATCAGCCAGCAACTCACACCTAGAGATGACATCTCCCATGAGGCCCTTCACGAGCAGATGGCAGCATCTGTGCATGAGATCAGTAACCTGATTGAACCAGTGGCCATCGCAGCCCGCTCCGACGCCTCTCAGCTGGGTCACAAGGTGTCTCAGATGGTTAGTTACTTTGAGCCACTTATCATGGCTGCCATCGGTACAGCGTCGAAGATCCTGAACAGCCAGCAGCAGATGAGCGTCCTGGATCAAACTAAGACTCTGGCTGAGTCTGCCCTACAGATGCTCTACACTGCCAAAGAGGCTGGAGGAAACCACAAGgcGGCTCACACGCAGGAAGCTCTAGAGGAGTCTGTTCAGATGATGAAGGAGGCGGTGGATGATCTGGCTGCAACTCTGGCAGAGGCGGCCAGTGCTGCAGGAGCGGTGGGCGGCATGGTCAACTCCATCACTCAAGCCATCAATAAGATGGAAGACGGTCCTGGAATCGAACCTGAAGGAACGTTTGTGGATTATCAGACCACGATGGTGAAGACGGCCAAAGCTATCGCTGTCACCGTTCAGGAGATGGTTACCAAATCCAACACCAACCCTGATGAGCTGGGTGGTTTGGCCAATCAGCTGACCACAGAGTTCGGTGACCTGGCATCCGAGGCCAGATGTGCAGCCATGACTGCTGAGAATGACGAGATCGGTTCTCACATCAGGAAGCAGGTGACAGAGCTGGGCTACAGCTGCACTGGTCTGGTCAGTAAAGCAGGAGCACTGCAGTGCAGTCCAAACGACTCCTACACCAAAAAGGAGCTCATCGACAGTGCTCGGAAAGTCTCCGAAAAGGTGTCTCACGTGCTGGCGGCTCTTCAGGCGGGCAATCGTGGTACTCAGGCCTGCATTACCGCTGCCAGTGCTGTTTCTGGCATCATTGCCGATCTGGACACCACCATCATGTTTGCCACCGCAGGCACTCTCAACCGAGAGAACGCCGAGACCTTTGCAGACCACAGAGAGCACATCCTGAAGACAGCTAAAGTTTTGGTGGAGGACACAAAGCTGCTGGTGTCTGGAGCAGGAGCGAGTCAGGAGAAACTGGCTCAGGCTGCACAGTCGTCTGTTAACACCATCACTAAACTGGCTGATGTGGTCAAACTGGGAGCGGCCAGTCTGGGCGCTGAAGACCCTGAGACACAGGTGGTTCTGATTAATGCGGTGAAGGATGTGGCTAAAGCTCTGGGTGACCTGATCAGCGCCACGAAGGCTGGCGGCAAACCTCATGATGATCCTGCCATGTTACAGCTCAAGAACTCTGCTAAGGTGATGGTGACAAACGTGACGTCTCTACTGAAGACGGTGAAAGCCGTGGAGGATGAGGCCACTAAAGGCACACGTGCACTAGAGGCCACCATAGAGCACATCAAACAAGAGCTGGCTGTGTTCAGCAGTCCAGATCCTCCTCCAAAGACCGCCACTCCAGAGGAGTTCATCCGCATGACCAAAGGCATCACGTTGGCCACGGCGAAAGCAGTGGCTGCTGGAAACTCGTGCCGCCAAGAGGATGTGATCGCCACTGCTAACCTGAGCAGACGAGCCATCGCTGACATGCTGCACTCCTGCAAGCAAGCGGCATTCCACCCGGAGGTGAAGCGAGATGTTCAGGCTCGAGCACTGCGCTTCGGCTCTGAGTGTGCCACAGGATACCTTGGCCTGCTGGAGCATGTGCTAGTGATCATTCAGAAACCAAGTCATGACCTTAAGCAGCAGCTGGCAAACTTCTCCAAGCGTGTGGCCGGTTCAGTGACAGAGCTCATACAGGCTGCAGAGGCCATGAAAGGTACAGAATGGGTGGATCCTGAGGACCCGACCGTCATCGCCGAAAATGAGCTGCTGGGAGCCGCAGCTGCCATTGAAGCTGCCGCCAAGAAACTAGAGCAGCTCAAACCCCGGGCCAAACCCAAGGAAGCTGATGAAAGTCTAAACTTTGAGGAACAAATTTTGGAAGCAGCCAAATCCATCGCTGCAGCCACCAGCGCTCTGGTCAAAGCTGCATCTGCTGCTCAGAGAGAGTTGGTGGCTCAAGGGAAGgtCGGGGCAATCCCAGCAAACGCGGTGGATGATGGACAGTGGTCACAGGGTCTCATTTCTGCTGCACGTATGGTGGCTGCAGCTACGAACAACCTGTGTGAAGCGGCTAACTCTGCGGTTCAGGGTCACGCCAGCGAGGAGAAACTCATTTCTTCGGCCAAACAGGTGGCAGCATCCACCGCTCAACTGCTGGTGGCCTGTAAGGTCAAGGCTGACCAGGACTCCCAGACCATGAAGAGACTGCAggctGCAGGTAATGCCGTCAAGAGGGCGTCAGATAACCTGGTGAAGGCGGCGCAGAAGGCTGCGTTCGAGGCCCAAGATGATCAGGCCGTGATGGTGAAGAGCAAGATGGTAGGCGGTATCGCTCAGATCATCGCCGCTCAGGAAGAGATGCTCAGGAAGgagagagagctggaggaagcCAGGAAGAAGCTGGCCATGATACGACAGCAACAGTACAAGTTCCTGCCGTCAGAGCTCAGAGAGGACGGACAGGAACAGTGAGCCGCGCCAGAGACTAATCAGTGACATTGAGAGCTCGAGAAAAGTCATCAACGATATGCAATGAGTAAAAAGTGAACTATGTATCAGGATGtctattttaagtgttttgtttatttccgtcacttttttttggagaatTGCCATGCCAGCTTTATTGTTTAGTTGTATTTGGATAAAGCATATACAAATCCTTTTAATgtctatattatttttcttcagtaCTAGATAGGTCAGATCAgcagtgtgtgttttgaaagctCGTGATCGTGGCAGGGGCCAAACAGTGTTTGTAAGCTTTTCAAGAcaaaatttgtactttttcaatttttttttttttttttttttttttttgtggcaatTTGGACCAGCAGTGCAATGATTAACTTTGCGTCCTAGAAACAATTCACGGAGAAAACAtatcattttctaaataaaagaataataaagcTTTGAAATGTTACAATAGCATCTCCTGTTAATGTTTTGTCGATGTTTGCTTTTGTGACAACTTGGTCTGCTAGCGAATGATATCTTTTATAACGCATAAAgccatatttacatttttgcttttataatgtgttttttttttttttgttcttttcttgcTATTAACTGTTGTAATTTACTTATGTGATGCCCGTGCAGATGTAGACAAGACGATATTAGATTAACAAAAATTGCTTAATTGCAATGGTTGTTCATGAAAGAATCAGAGTTATTATAAAGAActgttttaagaaaagaaaagactgtTATTAATagatgaaatgcatttaacagTTTGAGTTTTCACCATTGCTGCCTTTCCTGTTGCATTCGGTATGTTCTGAATCTTGCCtgcctttatattttataattgtgtATTTATCTGTTAACAGTTTCTCACCTAAAATAAGCAGACACACTTAGTCGATGTGTTTATCTAAACACTCATAAATTCACTGTTTTGCAAATA

Function

symbol description
tln1 Predicted to enable integrin binding activity. Acts upstream of or within animal organ development and sarcomere organization. Predicted to be located in several cellular components, including cytoplasm; cytoskeleton; and ruffle. Predicted to be active in focal adhesion and plasma membrane. Is expressed in several structures, including adaxial cell; cardiovascular system; cranium; musculature system; and nervous system. Orthologous to human TLN1 (talin 1).

NR:

description
PREDICTED: talin-1-like isoform X2

GO:

id name namespace
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0007155 cell adhesion biological_process
GO:0001726 ruffle cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005158 insulin receptor binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249807.1 True 7507 mRNA 0.53 50 4590288 4627041

Neighbor

gene id symbol gene type direction distance location
nrg1 nrg1,LOC107575152,LOC107681480 coding downstream 182351 4358660 ~ 4407937 (-)
sh2d4a sh2d4a,LOC107715862,LOC107665475,LOC107740790,LOC107564121 coding downstream 340345 4241301 ~ 4249943 (-)
ppip5k2 ppip5k2 coding downstream 388900 4167022 ~ 4201388 (-)
macir zgc:194281,cunh5orf30,LOC107665462,LOC107740794,LOC107715868,LOC107670048,LOC107564120 coding downstream 426174 4155404 ~ 4164114 (-)
chd1 chd1,LOC107665465,LOC107670034 coding downstream 437000 4131742 ~ 4153288 (-)
LOC122353167 wrn,LOC107715857,LOC107573262,LOC107758726 coding upstream 196423 4823464 ~ 4867579 (-)
ubxn8 ubxn8,LOC107715867 coding upstream 278840 4905881 ~ 4911182 (-)
LOC122352400 gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163 coding upstream 373643 5000684 ~ 5017151 (-)
LOC122352563 pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 coding upstream 402264 5029305 ~ 5031460 (-)
LOC122352871 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494,LOC107567230 coding upstream 422957 5049998 ~ 5053764 (-)
G74768 NA non-coding downstream 48507 4092043 ~ 4541781 (-)
G74770 NA non-coding downstream 55206 4085753 ~ 4535082 (-)
G74769 LOC108276716,LOC108427282,LOC107102752 non-coding downstream 58052 4081576 ~ 4532236 (-)
G74803 LOC107715875,LOC107737170,LOC107568645,LOC107670039,LOC107702558 non-coding downstream 79346 4510546 ~ 4510942 (-)
G74762 tln1,LOC107702558,LOC107715875,LOC107568645 non-coding downstream 93630 4495060 ~ 4496658 (-)
G74819 NA non-coding upstream 52662 4679703 ~ 4680232 (-)
G74846 NA non-coding upstream 212176 4839217 ~ 4840661 (-)
G74858 ppp2cb,zgc:56064,LOC105021738,LOC107758729,LOC107728270 non-coding upstream 264553 4891594 ~ 4897087 (-)
G74861 NA non-coding upstream 276936 4903977 ~ 4904469 (-)
G74869 NA non-coding upstream 300164 4927205 ~ 4927617 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 677546 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 982500 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 1212504 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 1823093 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 2392859 2194085 ~ 2197429 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 392266 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 1911081 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 2001384 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 2550283 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 2897153 7524194 ~ 7528558 (-)

Expression


Co-expression Network