LOC122352400 (gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163)


Basic Information

Item Value
gene id LOC122352400
gene name gmip,LOC107672475,LOC107670530,LOC107757342,LOC107587992,LOC107711163
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 5000684 ~ 5017151 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249808.1
GAACATTGGCCAACCTTCGCTTTAGAGGAAGAGAAGCGACGGTGCGAGGGAAGAGAGAGCAGAGTTATCAAAACCCACACAGTCTTCGTGTCCTGTGTCGGCGTTCGATGAAAGGTGATGGTTCTGACCCAATCATCTTCAGCTGGGGTGGATGGACTAACTGCTGGATGACAACACGAACACGGTCTGTTGTGAGCTGCTGGTTCATCGGTCAAGGATTAGATGGAGGAGGCAGCAGAGACTGCACAGCTGAGGCAACCAAAGGTTCAGGATGGTGGTACCCCAGTCCGGCACTCAGAAACCAAGCGTTACAGTGAGATATTACGTGATTTTGACGCTAACTTGGATCTCTCATTGACATGCTCGACTGTGGATGAGCTGCTACTAGAAGCAGACTCGCTGTCTTTAACAGACACTTCAGCAGACACCACGCTCAACGCTGATCTGGATGATATTACAGGTGAAGATGTGGAGTCGTTGAAGATCTGCCGTGAAGAGGAGGAAAAAGACGGAGCTGTCACCGCCCAGGATGCCGACCTGACCCTGTGTCGCTGCGAGGGCGGCGTGGAGCTCGCCCTCCAGTACGCCAAAATGTGGTGCCGTTACGCCAAAGACCTCCTGACCTGGATGGACAAAAGAATCAGCCTGGAGCAAGAGTTCGCAAAGAGTATTATGAGAGCAGCAGATGCGGCCAAGTCATGCGTCGCTCAACAGGACATGATGCCTCTGCAGATCATCTACACACAGGCTCTGGAACATGATATCAAAAGCAGCACATCAGCCAAACAAACAGCTGAACTCATTCAGCAGCGCTGCTACCAGGCTCTGTCAGCCAAGAAGAACGAAATCGACAAGTGGCGACGGGAATTCAAAGAGCAGTGGTCAAAAGAGCAGAAGAGGATGAATGATGCAGTGTCTGCGCTGAAGAGAGCAAGACAGCAATACCTGCAGCGCTGTGAGGAGCTGGAGAAGGCCAAAGCCATGACGGCCAAAGCTGAAGAGGACACAGGGGGTTACAAAACCCTGGACAAGAGGAGGAAGTCCAGAGATGACGCCCAAACCAAGGTTACAGAGACCGAGATGCTCTACAGGCAGTGTGTGTGCGAAGCGAACAACCATCAAAAAGAGCTGGATAAGGTGAAGCGCAAAATCATTGTCCACATTCGCAAGCTCATCTGCCAAGGAGACACTGTGCTAAAAGAGGCAACGGTGAACATGTTTTATTACCAGCGGCAGCAGACCGAGCAGGTTCCTCTGGGCTACCAGAACTTAGAACTGACCTGCAGGCCCTGCGATCCAGGAGAACCCTACCTGCACTACATCCTGGGGAAGAACCTGCCCGAACAACCTCTCCAGAACTTCATATTTCAGGAGTTCACCCCCCAGAACAAGAGATCCCCACCGACAGGTCGACGTAAACAGAGCACTGCTCTGAGTTATCAACAAGATTCGTACGTGTTACCAGAGGAACTGAAACACAGCAGCAGTTTAGTAGATGGACGACGCCCCGGTCACAGCGACAGAGACAGCACCGGAGGAAGTCTTGAGTCGCTGTCCAGTCCAGCTTATGGGAACCGTAAGCTGCCCAAGGCCTCCTCCACGGGAACCATGTCTTCAGATGATCTTGATGAGAAAGACTCTCTGCAAGAAGCAGAGAGCGAAGAGGGTTTGTCTGACAGCAACGGGATGACCTGCAAACCACGAAATGCGCCCCGTGCCGCACTGACTCacagactgaaaaaaatgaagagCAAGATGGTCAAGTGTAAGCAATGTGACAATTACATCCTGGTCAACGGGATTGAGTGCGAAGAGTGTGGCCTTGCAGTCCACAGGAAGTGCCTGGAGGTGTGCCAGTTGGAGTGCGAGCACCGGAGAGGCTTCATCTTTGGGATGGAGTTCTCCCTGCTGCCCCGGGAGAGCCAGGACTCTGTGCCCTTCGTAGTCCTGCGCTGCACGGAAGAGATTGAGAACAGGGCTCTCGGAGTCCAGGGGGTTTACAGAATCAGTGGATCCAAACCTCGCATTCTGAAGTTATGTCAGGCTTTCGAAATTCAGAAAGACCAAGTTGACCTTAGTGACCTCTCGCCTCATGACATCAGTTCCGTACTCAAGCATTTCTTCAAAgagCTTCCAGAGCCGTTGCTCACCTTTGACCTTTACAACGACTTCATCGGTGTGGGCAAGGAGATTCAGAGGCTTAGTGAAAAGGACCACGCATCCGAGACTGCTGGGATTGTGACGAGCACTGTGGCCAAACTCAAAGAGCTCATCGGACGACTGCCTCTGTGTAACTACAACGCAGTGCAGCACATGATGGCCCACTTGAACAGGGTTGCAGAACATTATGAGGACAACAAGATGTCTCCAGGAAACCTCGGCATTGTGTTCGGCCCCACTCTCCTGCGGCCCCTGGTGTCAGGAGACGTGTCTATGATTGCTCTGCTGGAAACCAGCTACCAGGCTCTTCTCGTGGAGTTTATGATCTCAAACTACGAGCACATATTCGGTCCCGCCACGAGATCCAGCACGCCTCCTCCACCGCCTCCCACGGCACCGCTCCCAGACACCCCTCCTCCCAGAGCCTCGTGTCCCTCTCAGGACCCCGAAGCCACGGGCAGGGAGCGTCCGCGCTCTCTGGAGTCCTGGCTCTGA

Function

symbol description
gmip Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and negative regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction. Predicted to be active in plasma membrane. Orthologous to human GMIP (GEM interacting protein).

NR:

description
PREDICTED: GEM-interacting protein-like

GO: NA

KEGG:

id description
K20653 GMIP, ARHGAP46; GEM interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249808.1 True 2655 mRNA 0.53 21 5000684 5017151

Neighbor

gene id symbol gene type direction distance location
ubxn8 ubxn8,LOC107715867 coding downstream 89502 4905881 ~ 4911182 (-)
LOC122353167 wrn,LOC107715857,LOC107573262,LOC107758726 coding downstream 133105 4823464 ~ 4867579 (-)
LOC122352396 tln1,LOC107715875,LOC107670039 coding downstream 373643 4590288 ~ 4627041 (-)
nrg1 nrg1,LOC107575152,LOC107681480 coding downstream 592747 4358660 ~ 4407937 (-)
sh2d4a sh2d4a,LOC107715862,LOC107665475,LOC107740790,LOC107564121 coding downstream 750741 4241301 ~ 4249943 (-)
LOC122352563 pgls,LOC107672478,LOC107711179,LOC107757376,LOC107567243,LOC107670497 coding upstream 12154 5029305 ~ 5031460 (-)
LOC122352871 LOC107711242,LOC107672448,LOC107588011,LOC107757354,LOC107670494,LOC107567230 coding upstream 32847 5049998 ~ 5053764 (-)
ywhah ywhah,LOC107562560,LOC107713377,LOC107688000,LOC107555530 coding upstream 231009 5248160 ~ 5252719 (-)
depdc5 LOC107713378,LOC107562559,LOC107686465,LOC107687976 coding upstream 235886 5253037 ~ 5274154 (-)
rab36 rab36,LOC107686502,LOC107562552,LOC107744178,LOC107555516,LOC108427235 coding upstream 257320 5274471 ~ 5279198 (-)
G74915 NA non-coding downstream 38451 4961570 ~ 4962233 (-)
G74869 NA non-coding downstream 73067 4927205 ~ 4927617 (-)
G74861 NA non-coding downstream 96215 4903977 ~ 4904469 (-)
G74858 ppp2cb,zgc:56064,LOC105021738,LOC107758729,LOC107728270 non-coding downstream 103597 4891594 ~ 4897087 (-)
G74846 NA non-coding downstream 160023 4839217 ~ 4840661 (-)
G74935 NA non-coding upstream 41363 5058514 ~ 5059679 (-)
G74936 LOC107567234,LOC107670466,LOC107757355,LOC107672456,LOC107711241,LOC107588012 non-coding upstream 43449 5060600 ~ 5061090 (-)
G74937 LOC107711241,LOC107588012,LOC107672456,LOC107757355 non-coding upstream 46719 5063870 ~ 5064146 (-)
G74943 NA non-coding upstream 62797 5079948 ~ 5080179 (-)
G74944 NA non-coding upstream 78477 5095628 ~ 5096028 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other downstream 1087942 3905614 ~ 3912742 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 1392896 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 1622900 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 2233489 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 2803255 2194085 ~ 2197429 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2156 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 1520971 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 1611274 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 2160173 7177324 ~ 7180821 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other upstream 2507043 7524194 ~ 7528558 (-)

Expression


Co-expression Network