and3 (LOC107742405,LOC107676004,LOC107586202)


Basic Information

Item Value
gene id and3
gene name LOC107742405,LOC107676004,LOC107586202
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7862610 ~ 7865286 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249830.1
atgAGGCAGAAGGTGACGTCTGTGCTGTGCCTTTATGGGGCTCTGCACTGCTTGCTGTTTCTGCCAGTGTCGCGGGCAACGTCGTTAGCAAAAGTCTCCAAAGACAAAGCATCTAATCCAGCTGTCAGCATCGACTCTGAACATGCCCATGGTTTTCTGGCACACGCACGTTCGAGAAGAACAGCTGACCCCAACTGGTATCGCAGTAATCCAGACTTCCAGTCCTACTACCGTTATTACAACAGTATTGGGCACACTGAGGGGCTCTACGAGATAGACAGAATTCGAATGCTTTACCAGCAGATGCGACACCTGGAGCTCGCGTACGGACCTGAGGCGTCCAAATTCCAGAACACCCTCGGTCTCCAGCTAAAACCCACGCCTCCACCCACAACCCAGCCTCCACCCCCCACTTTACCTCCCGTCTCCAAGATGGACGTTATGTACCTGTGTAATTTAAAAGACCCCCAATGCAAGCCACATATAGTGTACCTGCCCGCCGGTGGTGTACCTGTCCTTTGCGATCCACGGTACCACCCAAACTGCAACCTCAGCCCTGTCCAGAAGCCGCTTTCTCCACCCGTAACTCCCTCAGAGCCGGTGACGTCAGACcctcctccaccaccaccaccaccacaaaaaaacaagccCCCTCCACCACCCCCTCCTCCAATGATTATGAAAGGAATGGAGTATGACTGTGATCCTTACTGGGACCCCGACTGCTTGATCGACAACCCTCCCAGGCCAGTTAAGATGATCGAACCACCACCAGCGCTGCCGGCTGAAAAGGGGAAAAAGGAAACGGACAGCAAAGTCATCCTAAACGCTCCAGTTCCAACCTACGACCCATATGACTTCAATCAAGATCTATATGATCCTTTCCGCCATGCAGCTCCCTGATATCAAATCAGTGAAAAAACGCATCTTCATAATTTACTCCTACATTTACGTTTTCTTATCAAAACCATGTAGCCTATAATTTATAAGATTATGTAGACGtcgcatattaaatatattaaaccgtgggcttttaataataattgtgttgCTAGATTTGTATTCTTTAGACAAAAATCTTGAGGCCAGA

Function

NR:

description
PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249830.1 True 1090 mRNA 0.49 5 7862610 7865286

Neighbor

gene id symbol gene type direction distance location
per1a per1a,LOC107678008,LOC107742351,LOC107676011,LOC107586160,LOC107720685 coding downstream 13423 7833109 ~ 7849187 (-)
pcolcea pcolcea,LOC107720687,LOC107554310,LOC107678009,LOC107586222,LOC107676034 coding downstream 33026 7823409 ~ 7829584 (-)
zgc:172339 zgc:172339,LOC107720553,LOC107586200,LOC107742407,LOC107676025,LOC107554295,LOC107677954 coding downstream 167694 7692846 ~ 7694916 (-)
LOC122353013 LOC107677955,LOC107554294,LOC100002544,LOC106563379 coding downstream 173115 7688141 ~ 7689495 (-)
epob epob,LOC107676014,LOC107586154,LOC107742357 coding downstream 176310 7681895 ~ 7686300 (-)
si:ch1073-143l10.2 LOC107720678,LOC107742346,LOC107742345,LOC107554315,LOC107586164 coding upstream 14922 7880208 ~ 7881971 (-)
LOC122352606 LOC107702789,LOC107554304,LOC107720581,LOC107586167,LOC107675994,LOC101883815,LOC108424542 coding upstream 23920 7889206 ~ 7895138 (-)
LOC122352481 LOC107720603,LOC107554305,LOC107702788,LOC100538037,LOC107742403 coding upstream 30809 7896095 ~ 7897870 (-)
im:7136398 LOC107720586,LOC107554322,LOC107702786,LOC107742402,LOC107675995,LOC107586224 coding upstream 34728 7900014 ~ 7904543 (-)
LOC122352483 LOC107720676,LOC107554321,LOC107702795,LOC107676021,LOC793236 coding upstream 39820 7905106 ~ 7910185 (-)
G75667 NA non-coding downstream 98757 7761525 ~ 7763853 (-)
G75666 NA non-coding downstream 101512 7760833 ~ 7761098 (-)
G75654 NA non-coding downstream 174637 7687694 ~ 7687973 (-)
G75633 NA non-coding downstream 246426 7609140 ~ 7616184 (-)
G75549 NA non-coding downstream 374043 7487473 ~ 7488567 (-)
G75749 NA non-coding upstream 232020 8097306 ~ 8099806 (-)
G75767 NA non-coding upstream 300162 8165448 ~ 8165708 (-)
G75868 NA non-coding upstream 349376 8214662 ~ 8221865 (-)
G75871 NA non-coding upstream 365402 8230688 ~ 8260267 (-)
LOC122352914 NA non-coding upstream 1021718 8887004 ~ 8887358 (-)
trnal-uag_2 NA other downstream 244 7862285 ~ 7862366 (-)
trnal-aag_32 NA other downstream 2307 7860222 ~ 7860303 (-)
vamp2 mpp1,vamp2,LOC106603197,LOC106563390,LOC106523110,LOC107386619,LOC107554313,LOC107742350 other downstream 2896 7851021 ~ 7859714 (-)
G75562 LOC107675999,LOC107720693,LOC107677996,LOC107552059 other downstream 318520 7530861 ~ 7544090 (-)
LOC122352929 LOC107675999,LOC107677996,LOC107552059,LOC107720693 other downstream 334052 7524194 ~ 7528558 (-)
rnasekb rnasek,LOC107554319,LOC107720683,LOC107676000,LOC107586166 other upstream 18056 7883342 ~ 7885482 (-)
cadm2a cadm2a,LOC107720667,LOC107708610,LOC107675986,LOC107554325 other upstream 137075 8002361 ~ 9032489 (-)
G75863 NA other upstream 308063 8173349 ~ 8285918 (-)
unc13bb unc13bb,unc13b,LOC107686461,LOC107713368,LOC107688005 other upstream 453603 8318889 ~ 8396399 (-)
smtna smtna,LOC107686451,LOC107569392,LOC107688657,LOC107713360,LOC107744109,LOC107579337 other upstream 654380 8519666 ~ 8527447 (-)

Expression


Co-expression Network