LOC122352417


Basic Information

Item Value
gene id LOC122352417
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 9070840 ~ 9085659 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249831.1
TTGAGCGTAAAATTTGCAAGCAGGGGAGAATTGTTGATGTGACGATAACTACAGAAGAAAACAATTAACATTTGCACCAATTACTATTCTTGgactaaaagctaaaaatgtctGAAGCTATTTATGACGACGTGATCAGAAATGAGTCTGATAGATTGGAGATGACGGTGGCTATCTACGAGAGTGCAGATCGTGTGAGACATCACGACTTCaggacagaaacaaacacacaccacccACTACAGACTACAGAAAGTGACTGTGTGAAGATCAGAAGCTCCAGAGTGTCTGTAGTGTGTTTGGTTGTGCTGTGTGTTCTTCTGCTGACTGCGGTCATAGCGCTGTGTGTCTACATCcatacaaacaacacaaactacACACAAGAGAGGGATGAGCTACTGACCAACATCACCAACCTCACAGAAGAGCGAGACCGGATATTAAGTGGATGGTTTTACTTTAAATCTAGCTGTTACTACACTTCCTCTCAGTACAAAAACTGTACTGAGAGCAGAAGATACTGtacagagagaggagcagatcTGATCATCATAAACAGCAGAGAGGAAGAAaAGTTTGTAATGAAAAAGTCTGCCATTACTGAAGCCTGGATTGGTCTGACTGACAGTGATGTGGAGGGCACATGGAAATGGGTTGACGGCAGCACACTGACCTCTGGCTACTGGATTTCTGGAGAGCCCAATGGAGAAAGAGCAGAGAACTGTGTGGTGACTTGTTCATCAAGTCTGTATCATGATCCATTTCCAGTCTCTGTCTGTGGTGTGTGCTCCAGGTTCTCCGTGTCCAGATTCAAGCTCCTGTCAAGACAGAAAGTCAAGTCACTGCCATTTCCAACCAAAGCTTCCAAGAGATACGTCACTAACCTGCTATCGTTCACCATCATTCTGCCATATCTCAGCTGTCACAAATTAATATTGCTGGCTTATAAAAGAGCAGAAATGTCTGAAGCTATTTATGACGACGTGATCAGAAATGAGTCTGATAGATTGGAGATGACGGTGGCTATCTACGAGAGTGCAGATCGTGTGAGACATCACGACTTCaggacagaaacaaacacacaccacccACCACAGAGTACAGAAAGTGACTGTGTGAAGATCAGAAGCTCCAGAGTGTCTGTAGTGTGTTTGGTTGTGCTGTGTGTTCTTCTGCTGACTGCGGTCATAGCGCTGTGTGTCTACATCcatacaaacaacacaaactacACACAAGAGAGGGATGAGCTACTGACCAACATCACCaacctcacagaagagagaaaccaGCTACTAATTAACAACAGCCACCGTATTCTGTTAAGCAAACAGttgaatgaaatgtgttttaatggaaTGGatgGATGGTTATACTATAATTTTAGCTTTTACTTCATTTCCTCTGATGCGAAGAACTGGACTGAGAGCAGAAGATACTGCACTGAGAAAGGAGCAGATCTGATCATCATAAACAACAGAGAGGAACAAaatgCTGTTCAGAAAATGGCAGATGATTCTAAACTCTGGATTGGTCTGACTGACAGTGATGTGGAGGACACATGGAAATGGGTTGATGGCAGCACACTGACCTCTGGGTTCTGGAGGTCTGGAGAGCCCAATGGAAAAACAAAGGAGAATTGTGCTGTATCTTTTCAATCATGGTTGCTTGACTATCCATGTAAAAGTCCTTTTAAATGGatctgtgaaaaaaacattttgaaataatttttttttctttaatgtgatGCTTATTTACTTAAAGACCAGGACCATCATTTTTTGACTAGTTagtcattatattataaattagtttttactaTTAAAGCTTTCAATTGGTTAACTCACACATTTGTAATACTTGTCATCTCTCGGTCACGTTCATCTGATGGCTgcgttcacacagcagcagaatacTAACCATACTAAACACTGTTCTGTTCACACAAAGCTCAGCCtagatatattaaaaacataccaCATATAAACAGATATTTGATGCGATTGTACACATATTGCAATAAAGTGCAAGTTGGCAAGTATATGATGCCTGATATCAAATCCAATTATGTCCAAATTTGGAAAGGTCTTGTGGTAACagcgaaaaaaataaaaataaaaatgtagcctACAGTAGCAATGGTTAGCAACCACACATACAATATGCATGCAGTAAATCAAACTTGATGATCAAATGCACATGAAATACACAATTTGTCTTATATATTCATTGTCTAAGTTTTCAGTGAAATGTGAAGTAAAATATAACGTTCATGGGTGAATTTTTTCAAGGACCCAAATATTTAGCCACAATACAGTGTTGAAGAGTGACGGCTGTTTCAGTATTACATCCTTTTAGACTTTGAGATTTGACCTGGGATCAgttctgtttttgtgttattattctAACTGATTAAAACAGAGAGCGGCTAAACTTGTAAAGAGAACTACACAagaattattaaataacttctaaataactaattaataaCTAAAGTTATTCATACTATCACAGCTAGTGTCTGACTGTAACtgagcagaaatgttatttatgctGATGTGATCAGGACTAAGACTGATGGGGTGAAGAGATAGAGGTTGGAGATGATGGTGGAAATCTACGAGAGTGCAGGTCATGTGAGAGATTGTGACCTCAGGACGGAGAGACAAATACACACCAACCACTTTAGTGTACAGAAGAGCTGGGCTGAGAGCAAAAGATACTGTACTGAGAGAGAAGCAGATCTGATCATCATAAACAACAGAGAAACAAAATGTCTGATCGTGCTGCAGTCTGGATTGGTGTGACTGACAGTGATGTGGAGGGCCGCTGGAAATGGGTTGACTGCAACAGACTGACCTCTGGACTCTGCTCGGTGGCTTCATCCCTGAGACCTTTGTAGGACACCGCATGTTTGGAACCGCATTGAAAGATGCACAATAAGAGGCCCAAGGGATTGCTCGGCGTCGCACCATCTGTGAAAATAAACAGGGCGCACGGTTTTGTGAGAATGAACTTGTGACTGGTGATATTGATGCTGTTGTAATTGAATCAGTGTGGGACTTCCCACAAAGGACTCTTCTTCATGTCCATCAATGGCATTGTTAAACGATCCGCATACTCAGTGATCTGATTCTGACACCGCTTTCCATTCAGACCGTCTCAAGGACTGTAAGTTCAGCTGAAAGTTTGTGTCATTGCCACAATGTAGGGTAAACAGAGGCAGTGATAGCGAGGGAGACAGACAGAGCGAGAAAAGTCTTGGCGTTTCCGTACACTCAGTTTGAGATGATGACCCTCCGGCATGGAGGGCATTGAGCACAGATGGTTCTTCTCTTTGGCTGGCTATCCGTCCCGAGGACGGCCGCAGGTCGGGTCCGGTGGTGGCGGGGCCCATATGGCTGTGAGGGCACCCcgctctgcctctctctctcgccctctCCATGCCCTCGACGCCACCTTCCACCTTATGGAGATTTTCCTCACCAGCCCTGGCACATGGATCAACAACCTTACGCTATGTTTCTCTCTGTATTTCCGTCTtggataaaaaagaaatgctattCTAGCACTGAAGTAAATTATGTACAACAAGCAGGTTGTGCTTTAAGTTAGGAGTGTGCGATattgactaaaaaaaatatttctggtattttatgaataaacgataattaaatgatattttgctGAGCGTGTTCATGTGCCGGCAAA

Function

GO:

id name namespace
GO:0042116 macrophage activation biological_process
GO:0002274 myeloid leukocyte activation biological_process
GO:0002376 immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249831.1 True 3708 mRNA 0.42 14 9070840 9085659

Neighbor

gene id symbol gene type direction distance location
sftpba LOC107744174,LOC107688118,LOC107562578,LOC107713296,LOC107578508 coding upstream 588852 8475593 ~ 8481988 (+)
ggcx ggcx,LOC107744113,LOC107686456,LOC107569403,LOC107562573,LOC107713363,LOC107688460 coding upstream 643910 8420336 ~ 8426930 (+)
fam136a fam136a,LOC107744116,LOC107713366,LOC107562571,LOC107569401,LOC107686460,LOC107688083 coding upstream 659237 8409867 ~ 8411603 (+)
stoml2 stoml2,LOC107686459,LOC107569390,LOC107688641 coding upstream 669244 8398186 ~ 8401596 (+)
fam166b LOC107744158,LOC107562540,LOC107686494,LOC107713372,LOC107555534,LOC107688046 coding upstream 776005 8292462 ~ 8294835 (+)
paxbp1 paxbp1,zgc:158234,LOC107684999,LOC107701114,LOC107718769,LOC107592156 coding downstream 205192 9290851 ~ 9302634 (+)
slc7a1a slc7a1,LOC107592154,LOC107718716,LOC107685000,LOC107720662,LOC107556867,LOC107701112 coding downstream 217977 9303636 ~ 9323880 (+)
mtus2a mtus2a,LOC107718718,LOC107685001,LOC107701115,LOC107555194 coding downstream 240165 9325824 ~ 9389728 (+)
vps36 vps36,LOC107720661,LOC107701118,LOC107718721,LOC107685004 coding downstream 322263 9407922 ~ 9416339 (+)
LOC122352939 LOC107720656,LOC107556866,LOC107685005,LOC107701120,LOC107718722,LOC107555193 coding downstream 330824 9416483 ~ 9422807 (+)
G75934 LOC107556871,LOC107701109,LOC107720665 non-coding upstream 358642 8708754 ~ 8712198 (+)
LOC122352915 NA non-coding upstream 365980 8703514 ~ 8704860 (+)
G75813 NA non-coding upstream 603563 8464744 ~ 8467277 (+)
G75814 LOC107569391,LOC107713297,LOC107744111,LOC107686454,LOC107562576 non-coding upstream 608433 8397832 ~ 8462407 (+)
G75799 NA non-coding upstream 756718 8313561 ~ 8314122 (+)
G75974 NA non-coding downstream 160339 9245998 ~ 9253481 (+)
G75984 NA non-coding downstream 181156 9266815 ~ 9273289 (+)
LOC122353086 NA non-coding downstream 191774 9277433 ~ 9283648 (+)
G76150 NA non-coding downstream 627168 9712827 ~ 9713108 (+)
G76162 LOC107693916,LOC107701134,LOC107701133 non-coding downstream 677347 9763006 ~ 9766783 (+)
G75937 NA other upstream 335844 8733779 ~ 8734996 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other upstream 354563 8713203 ~ 8716277 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other upstream 489712 8580009 ~ 8581128 (+)
G75750 NA other upstream 967916 8101476 ~ 8102924 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other upstream 1190740 7872539 ~ 7880100 (+)
LOC122353220 slc46a3,LOC107701100,LOC107555149,LOC107718789 other downstream 263513 9349172 ~ 9396047 (+)
map3k7cl map3k7cl,LOC107693871,LOC107701103,LOC107555143,LOC107557207 other downstream 606440 9692099 ~ 9699817 (+)
ufm1 ufm1,LOC107701138 other downstream 840662 9926321 ~ 9933221 (+)
frem2a frem2a,frem2,LOC107720635,LOC107701139,LOC107555183,LOC107557211,LOC107693873,LOC107718779 other downstream 858075 9943734 ~ 9992676 (+)
znrd2 sssca1,LOC107720620,LOC107701155,LOC107693896,LOC107548841,LOC107718786,LOC107555163 other downstream 1232194 10317853 ~ 10320345 (+)

Expression


Co-expression Network