ift46


Basic Information

Item Value
gene id ift46
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11709431 ~ 11711598 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249836.1
ATGACCTGCCCGCATccaacagagaaaaaaagagctaCCACTTGCGCCCGGGCTTCTAATCAGAACGATAagaagatgaagaggatgatgaTTTATGATGATGACgTATACTCACAGACGATAGAGCTTGACCACAAATTGAAGCCCCCCTTTATCCCTGATTCATCCCCAGCTGTGGGAGACATTGATGCTTTCTCAAAGTGAGGCATGCCAGATGGGAGCCACAATCTGGGTCTCCtggttctggatgagctgcagaaTAAACAGTCAGACCTAACAGTGCTTCTGTGGCTCAGAGGAGAATGTAAAGATGTACATCTCTTTCACAGGCGAAAGTAAAGAGCGCTTGAAAACCCAGAGAAGAACCCTAAAGCCATAGACAGCCGGATCGAGGAGCATTAGGTGAGCTTTTCACGGTCCAAGCCTCCAGCGATTGTACATCATACTCATCCTATGCAAGAGGCGCCTGAGTTTGAGGAGCTTGTTCATCAGGTCAATCTTCCCACAGCAGATATTGACTGTGATTTGGCAGAGGCGTTGACATTATTTGTAAGAGTCCTGGACATCCCTGTACAAGAATATTCACTACTTCACGCCCTGTTCACACTTTATCTCCTAATTCAAAACTCACAGCACTTTAAATCTGCAGCGGAGGGCCAGAAATCTGACACACCGCCTGCTTCATGA

Function

NR:

description
intraflagellar transport protein 46 homolog

GO:

id name namespace
GO:0048264 determination of ventral identity biological_process
GO:0044464 obsolete cell part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249836.1 True 687 mRNA 0.47 12 11709431 11711598

Neighbor

gene id symbol gene type direction distance location
tmem126a LOC107747013,LOC107744609,LOC107693976,LOC107691630 coding downstream 176426 11530837 ~ 11533005 (-)
zpld1a LOC107548885,LOC107693966,LOC107747018,LOC107744615,LOC107576843,LOC107699252 coding downstream 242593 11458833 ~ 11466838 (-)
si:ch211-103f14.3 LOC107693965,LOC107747051,LOC107548846,LOC107699269,LOC107744635,LOC107576832 coding downstream 251929 11452623 ~ 11457502 (-)
alcama alcama,LOC107548884,LOC107693963,LOC107576815,LOC107699268 coding downstream 358794 11290898 ~ 11350637 (-)
LOC122352716 LOC107576779 coding downstream 537117 11168125 ~ 11172314 (-)
vps11 vps11,LOC107744603,LOC107691631,LOC107588528,LOC107693978,LOC107747034 coding upstream 2302 11713900 ~ 11719645 (-)
si:ch73-261i21.5 LOC107588542,LOC107693981,LOC107747005,LOC107578992,LOC107691696,LOC107751407 coding upstream 19525 11731123 ~ 11744558 (-)
LOC122352762 hist2h2l,zgc:194989,LOC107719244,LOC108277172,LOC107667924,LOC103356012,LOC107574861 coding upstream 35609 11747207 ~ 11748057 (-)
zpr1 zpr1,LOC107693980,LOC107747003,LOC107751399 coding upstream 38367 11749965 ~ 11754201 (-)
bsx bsx,LOC107747047,LOC107589660,LOC107751411,LOC107579003 coding upstream 69898 11781496 ~ 11784153 (-)
G76693 NA non-coding downstream 223003 11485906 ~ 11486428 (-)
G76657 NA non-coding downstream 418591 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding downstream 473741 11234372 ~ 11235690 (-)
G76642 NA non-coding downstream 598596 11096963 ~ 11110835 (-)
G76627 NA non-coding downstream 618370 11087586 ~ 11091061 (-)
LOC122353234 NA non-coding upstream 736944 12448542 ~ 12453651 (-)
G76902 LOC107746985,LOC107751382 non-coding upstream 893621 12605219 ~ 12610098 (-)
G76912 NA non-coding upstream 966769 12678367 ~ 12678625 (-)
G77135 ppm1e,LOC107728886,LOC107686131,LOC107588822,LOC107734442,LOC107691656,LOC107577402 non-coding upstream 1085066 12796664 ~ 12880735 (-)
G77153 NA non-coding upstream 1310055 13021653 ~ 13103059 (-)
ccdc83 NA other downstream 124471 11505310 ~ 11584960 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other downstream 502179 11176569 ~ 11207252 (-)
G76625 NA other downstream 670700 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 725693 10972881 ~ 10983738 (-)
G76498 NA other downstream 1229242 10478059 ~ 10480189 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 967392 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1070755 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 1780675 13492273 ~ 13533064 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other upstream 1826558 13538156 ~ 13543615 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 1931586 13643184 ~ 13654413 (-)

Expression


Co-expression Network