LOC122352428 (LOC107686199)


Basic Information

Item Value
gene id LOC122352428
gene name LOC107686199
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 14011544 ~ 14014981 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249843.1
ATGGTCAGTCAGAAGGGACTGACTGCTCTTCATTCAGTATATAATGAATATGGGAAAGGCTACAATCCCTGCAAACCACCCAAAGACCTTACTTTCTTTATCACAGGTAACACAACATTCCAGACCACAGGCAGCTTGACTTCAGTGCAGTCAAACTCCTCTGCAAATGTGACCTTTGTTCGTCCTGCAACATTCTTCATCAGTGGCTTTTCTAATTTCTCACATGCAAAATACTactatgtgtttttgtgttttgtatatgTTGTGACCATTTTGGGGAATTTATTTATCATGTGTACTATTTTATTGGCCCGCAGACTCCACACAGCCAAAtacattgctgtttttaatctGGCGCTTTCTGATCTGTGTGGAAGCTCAGCTTTGATTCCAAAACTCATAGACATGTTTTTATTCGAGCACCAGCTCATTTCATATGAAGCGTGTTTgatgaatatgttttttgtgtttcattttatgAACATTCAGTCTTTGACACTTCTCGCTTTGGCTTACGACAGACTGGTTGCTATTTGTTTTCCTCTGCGGTATCATgccattattacaaaaacatccaTGTCACTTCTTATAGGAAGTATGTGGATGTTTTCCATGGCTTTATTTGCTGTACTCGTGGGATTAGTCAACAGACTCTCTTTTTGTAGATCTACTGTGGTGAATAGCTATTTTTGTGACCATGGCCCTGTCATCAGCCTTTCCTGTAACAATAATGACATAAATTACCTCCTGGCGTATATTTTTTTCGGTCTTCTAATTTGTCTGCCGGTGATATTGATAACCCTCTCGTATTGTTGCATTGCTGCGGCATTGCTGAAGATCGCTCATGGTGCTGATCGCATCAAAGCCATGAAAACATGCACCTCACATCTTGTGTTAGTGGCAGTTTTTTATCTCCCAATTTTAGGTGTAAATGTTAAATCGATCTCAACATCTATTGATCAAAACTCCCGGATAATTAACACTTCCCTGACACAGACAGTACCACCTATGTTGAATCCCATCATATACACTCTAAAGACAGAGGAGGTCATGCAATCCATAAAAGACCTGTACAAACGATACAAGGTGAGCactattacagaaataaatgtgaaacagagaatgtaaatataagctcttgatatttcacattttgtccttaacgtttttgtttaataattgtatgaaaagaaaatggcatGTCGTTTGTTGCATATAAATAACAGACAAgctatataattataatgtactTTAACAAACATtcacttattatattattataaaataattgttcaaCTTCCTCATGTGTGATTACAATTTAACATCAcagtgtttaaataataataataaaaactgcacagatttttttgttgcttttttgttgtcatttccACTGACACCACTAAGGtagttttattgcaaaatatgatttaaattaaatttcaaggTTGTTTCAACAACGGCttaatgtaaattacatttgtatGAAAAAATGATGACATATGTTTTGATGTACATTGTCAAAGCTCATAAGAAAAGGCATTCAACTAGTCATTCAACCCTAAGGTGACATTTAGAGAAGCaaagtcaaatatttaaagGGCTAGCATATCCTGATATTGCTGAGTTCTATGTGTTCCTGGAGcattttattccaaatatttaatttgaccatatctctacacctaaaccttaCACATTAGTACTGcttaaaatcagaggaaatgatgacactgccgtacaagcaccaaacactgactgCAAGCCCAAACTTGCAACAACACAGTGTAAGTAAAGAAGGTCAAATATAGgtaaaaaggttaaataaagCTTCTTTAAAAGAGCAAAGTACTAAATCACAAAGACGGAACTACCAAGAATGGTACGTATTATTTGCATGTTGGCATCAGCTTTCCTGACATAATCATACACTGTAAATATGCAGCATGTGAATTACACTTTACAACTTTAGGCCTACATTTGAAATGAGAAGGCCTTCAGTGGATCAACAGCTTTCAAAGGATTCTGCAGTTTAACCAGGGGGAATTTATTTGCAAGTGATGCTATTGAGAATTTTGGTTTTGATCAAAGATCAAACATCCTTTGCCTATCTGGACCCGTTGATATTGTCTAGGATGAATGAACAATTGAGAATTTAACTATTTCTCATGTTcgataaaatcaaatcaaataaatacaaataaatatggaCGGTTCTTAATCGCGCCAAGCGTATCACATATcataaatacttttgaaaacatATAGTACTGTTGCTTCACAGTAAGAGAAagcatataaatgttttttttttaatgaggacATATAATAGAGTGATACGTAGGGCGCACTT

Function

NR:

description
PREDICTED: olfactory receptor 1M1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007608 sensory perception of smell biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249843.1 True 2353 mRNA 0.35 2 14011544 14014981

Neighbor

gene id symbol gene type direction distance location
smg6 LOC107728864,LOC107589291,LOC107686181,LOC107578000,LOC107697428,LOC107743389 coding downstream 224882 13773844 ~ 13786662 (-)
si:ch211-244c8.4 si:ch211-244c8.4,LOC107728884,LOC107686180,LOC107743390,LOC107697427,LOC107577989 coding downstream 253285 13754169 ~ 13758259 (-)
gabrr3a gabrr3a,gabrr3,LOC107589257,LOC107697425,LOC107686176,LOC106563567,LOC106603079 coding downstream 301096 13699234 ~ 13710448 (-)
rhbdd2 rhbdd2,LOC107728880,LOC107686174,LOC107577912,LOC107697423,LOC107743386 coding downstream 327407 13681141 ~ 13684137 (-)
prr11 LOC107728831,LOC107686171,LOC107589205,LOC107579091,LOC107743468,LOC107697420 coding downstream 349405 13659137 ~ 13662139 (-)
LOC122352429 LOC107578824,LOC107743443,LOC107697381,LOC107686201,LOC107743445,LOC107697382 coding upstream 1656 14016637 ~ 14017638 (-)
LOC122352430 LOC107743476,LOC107578847,LOC107743445,LOC107589561,LOC107583406,LOC107697382 coding upstream 7854 14022835 ~ 14023833 (-)
LOC122353045 LOC107697402,LOC107743478,LOC107589583,LOC107583407,LOC107579166,LOC107686204,LOC107741179,LOC107743480 coding upstream 11704 14026685 ~ 14027683 (-)
LOC122352431 LOC107589561,LOC107583406,LOC107741179,LOC107589922,LOC107579158,LOC107686204,LOC107589583 coding upstream 15170 14030151 ~ 14031155 (-)
LOC122352432 LOC107741179,LOC107686204,LOC107589583,LOC107583407,LOC107579158,LOC107743479,LOC107743480,LOC107697403 coding upstream 20354 14035335 ~ 14036324 (-)
G77379 NA non-coding downstream 16777 13994422 ~ 13994767 (-)
G77378 NA non-coding downstream 24378 13986935 ~ 13987166 (-)
G77352 NA non-coding downstream 206215 13805089 ~ 13805329 (-)
G77351 NA non-coding downstream 206652 13804483 ~ 13804892 (-)
G77347 NA non-coding downstream 210632 13800013 ~ 13800912 (-)
G77390 NA non-coding upstream 44458 14059439 ~ 14097135 (-)
G77432 LOC107744607,LOC107691628,LOC107693969,LOC107747009 non-coding upstream 129910 14144891 ~ 14145304 (-)
G77456 NA non-coding upstream 276872 14291853 ~ 14292718 (-)
G77472 NA non-coding upstream 346373 14361354 ~ 14361734 (-)
G77476 NA non-coding upstream 351300 14366281 ~ 14368555 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other downstream 203725 13806104 ~ 13807819 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other downstream 357131 13643184 ~ 13654413 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 467929 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 478480 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 1222449 12782353 ~ 12789095 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 187281 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 189435 14204416 ~ 14208006 (-)
G77443 NA other upstream 219525 14234506 ~ 14264322 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other upstream 325065 14340046 ~ 14343012 (-)
LOC122353009 LOC107562038,LOC107562041 other upstream 452205 14467186 ~ 14481449 (-)

Expression


Co-expression Network