LOC122352454 (wdr45,LOC107658559,LOC107689948)


Basic Information

Item Value
gene id LOC122352454
gene name wdr45,LOC107658559,LOC107689948
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 16438320 ~ 16442017 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249861.1
AGGAAACTCGTCGGATGTTTTAATTACCTTAATGGACGATCAAATCTAGACCAAAAAAACCCTGAAGATCTAGGAAAAGCAGCAGTGAACTCTTCTCAGACATCATGGCCCAACAGAGAGGAGTAAACAGCCTTCAGTTCAACCAGGACCAGAGTTGTTTCTGCTGTGCAATGGAAACAGGTGTTCGCATTTACAACGTGGAACCTTTAATGGAAAAGGGCCATTTAGATCACGAGCAGGTGGGCAGCATTGCTCTGTGTTCAATGCTTCATCGATCAAACCTCTTGGCCGTGGTGGGAGGCGGCATCAACCCTAAATTCTCCGAAATCTCAGTATTAATTTGGGATGATGCTCGGGAAGTGCGAGACCCTAAGGACAAATTAGTCCTTGAGTTCACGTTCACCAAACCAGTGCTGGCTGTGCGCATGAGGCATGACAAAATCATCATTATCCTAAAAAACAGGATCTACGTCTATAGTTTTCCCGACAATCCTGTCAAGCTGTTTGAGTTTGACACTCGAGATAACCCGAAAGGTTTGTGTGACCTGTGCCCTAGTTTGGAAAAGCAGTTGTTGGTTTTCCCCGGGCACAAATGCGGCAGCCTGCAGTTAGTGGACCTTTCCAACACCAAACCTGGCACATCGTCTGCTCCTTTCACTATTAATGCCCACCAGAGTGAAATCGCCTGTCTGGCACTGAACCAGCCTGGCAGTGTGGTTGCGTCTGCATCTAGAAAGGGCACTCTGATCCGTCTGTTTGACACCACAACACGAGACAAGCTAGTGGAGCTGCGAAGAGGAACTGACCCTGCTACACTCTACTGtATTAATTTCAGCCATGACTCATCTTTTCTGTGTGCATCGAGTGACAAAGGAACTGTGCACATATTTGCACTGAAAGACACCAAACTGAACCGACGTTCTGCTTTGGCGCGAGTAGGAAAGGTGGGTCCGGTCATCGGGCAGTACGTGGACAGTCAGTGGTCTCTGGCTAATTTCACGGTGCCGGCTGAGTGCGCTTGCATCTGTGCCTTTGGGAAGAACACCTCCAAAAATGTCAACTCTGTTATTGCCATATGTGTTGATGGGACATTCCACAAGTACGTCTTCACCCCTGATGGAAACTGCAACCGCGAGGCTTTCGACGTCTATCTGGACATTTGCGATgatgatgatttctgaagctgGAGATTGAGCTGTAACTAATGTAAAATAGTAGCCTCTTCAACCGCTCGTTGTTCCTGATGCTTATTACTGTTAGATTATGTTACTGCCTTGTATGATTAATTGTACATAAAATCTGCCAATGAGTAAATGTCTTGTGAACTTTTATCTTATCACTTCACATGCAGGAGTTTCAAAGTCTGATCGTTTACTTTTCCTTCAGAGATACTTAACCTTTGAACACTTGAATGATTTCTCATCATTCTTTGTTCTGTCAAGGAATAAGGTTCCTCGGCCTTTAAGGAGCTTTATTTATGAATCAGTACAGCTTTTTGGGACTAAATATATAGAACAGGA

Function

symbol description
wdr45 Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy. Predicted to be located in phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Human ortholog(s) of this gene implicated in neurodegeneration with brain iron accumulation 5. Orthologous to human WDR45 (WD repeat domain 45).

NR:

description
WD repeat domain phosphoinositide-interacting protein 4

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG:

id description
K22991 WDR45, WIPI4, WIPI3; WD repeat-containing protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249861.1 True 1520 mRNA 0.45 11 16438320 16442017

Neighbor

gene id symbol gene type direction distance location
stc1l stc1l,LOC107689312,LOC107718700,LOC107588987,LOC107658607,LOC107758648,LOC107602071 coding downstream 36786 16398853 ~ 16401534 (-)
march5l march5l,LOC107718703,LOC107689266,LOC107602066,LOC107658605,LOC107588990 coding downstream 92497 16342029 ~ 16345823 (-)
tcf7l1a tcf7l1a,LOC107602061,LOC107558109,LOC107658535,LOC105912913 coding downstream 154560 16256279 ~ 16283760 (-)
dusp11 dusp11,LOC107602062,LOC107758654,LOC107689237,LOC107558079,LOC107565330 coding downstream 194287 16240176 ~ 16244033 (-)
stambpa stambpa,LOC107758608,LOC107658597,LOC107558102,LOC107746197,LOC107689905,LOC107602045 coding downstream 199251 16232746 ~ 16239069 (-)
G78010 NA non-coding downstream 42675 16394214 ~ 16395645 (-)
G77980 NA non-coding downstream 58769 16374220 ~ 16379551 (-)
G77979 NA non-coding downstream 85272 16351397 ~ 16353048 (-)
G77947 LOC107689250,LOC107689777,LOC107602036,LOC107758655,LOC107602063,LOC107758576 non-coding downstream 186127 16245655 ~ 16252193 (-)
LOC122353043 NA non-coding upstream 53960 16495977 ~ 16497273 (-)
zgc:100918 zgc:100918,LOC107588983,LOC107689338,LOC107602073,LOC105902761,LOC105015198,LOC106563067,LOC103037223 other downstream 726 16432527 ~ 16437594 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other downstream 261209 16172478 ~ 16177111 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other downstream 381013 16030527 ~ 16057307 (-)
LOC122352931 LOC107758671,LOC107689893 other downstream 416546 16016671 ~ 16021774 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other downstream 541088 15892644 ~ 15897232 (-)

Expression


Co-expression Network