LOC122352456 (LOC107679515,LOC107565282,LOC107730972,LOC107694558)


Basic Information

Item Value
gene id LOC122352456
gene name LOC107679515,LOC107565282,LOC107730972,LOC107694558
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 15695420 ~ 15697678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249865.1
atGGTGGTTCCTCACAAAACATGTAGgactgtgtttctgaatctgctggtgatcatctccatctctcacttcaAGAAGCTTCACACTCCAACCAACCTgatcattctctctctggctgtggCCGACATGCTTCTTGGACTTGTGATGCCCATAGAGGCTACTAGGCTGATTGAGACATGTTGGTACTTTGGAGAAACTTCCTGTGGGCTCTACTCAATATTTATTGCAATGCTTCTCTCGGCATCTCttagtaatttagttttaattgctgttgatCGTTATGTGGCTGTTTGTCACCCTTTACAGTATCCACAGAAAATAACAATGACTAAGACCTTAATAAGCATCTCTCTGAGCTGGTTTTGCTCCTCAGCTTATAACACAGCCTTTGTAATTAATAACGGGTATTTTGATATTTCACACCAAACAGACGTGTGTTATGGAGAGTGTTCTGTTCAGATGGGTTTTGCTTGGAGAGTCACTGATCTGatcatgtcttttattttcccCTGTATCTTcatcatttctttttacttgAGAATTTTTTATGTAGTACATCTACAAGTAAATGTTATAAACTCTCTGATGAAGAGTGGCAGATGTGTAAATGAAGGTTCATTGAGAAGGAAATCTGAGAGTAAAGCTGCTCTGACATTAGGGATCATTGTAACAGTTTATCTACTTTGCTATATTCCTTACTATATCTGTTCTATTACAGTAATCTCTTCCACAACCATAAATGTTTTGACATGGgttgtgtattttaattcagGTCTAAATCCTATggtttatgctttattttacccATGGtttaaaaagacagtaaaaCGTATCTTaactctgaaaatattttggcCAGCATCCTCTCTGgtaaacattttaacagaacattaa

Function

NR:

description
PREDICTED: trace amine-associated receptor 13c-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249865.1 True 894 mRNA 0.37 2 15695420 15697678

Neighbor

gene id symbol gene type direction distance location
LOC122353069 LOC107565282,LOC107679515,LOC107730972,LOC107694558 coding downstream 11127 15683271 ~ 15684293 (-)
mafga mafga,LOC107556599,LOC107739593,LOC107729585,LOC107701907 coding downstream 333144 15347467 ~ 15362276 (-)
LOC122353145 LOC107701914,LOC108437168,LOC108277112,LOC105013038 coding downstream 353455 15316648 ~ 15341965 (-)
LOC122352614 LOC107701908,LOC107729578,LOC107556598 coding downstream 379552 15307899 ~ 15315868 (-)
LOC122352451 LOC106676183,LOC106674878 coding downstream 389012 15305535 ~ 15306408 (-)
LOC122352458 NA coding upstream 7547 15705225 ~ 15706280 (-)
LOC122353072 NA coding upstream 15703 15713381 ~ 15714427 (-)
LOC122353050 NA coding upstream 19106 15716784 ~ 15717845 (-)
LOC122353087 NA coding upstream 23677 15721355 ~ 15722425 (-)
LOC122353079 NA coding upstream 32857 15730535 ~ 15731590 (-)
G77715 NA non-coding downstream 47557 15644403 ~ 15647863 (-)
G77706 NA non-coding downstream 300868 15392088 ~ 15394552 (-)
G77703 NA non-coding downstream 326744 15368401 ~ 15368676 (-)
G77700 NA non-coding downstream 348131 15345000 ~ 15347289 (-)
G77692 NA non-coding downstream 419416 15273913 ~ 15276004 (-)
LOC122352661 NA non-coding upstream 129406 15827084 ~ 15827556 (-)
LOC122352573 NA non-coding upstream 133529 15831207 ~ 15831926 (-)
LOC122352641 NA non-coding upstream 141835 15839513 ~ 15840066 (-)
LOC122352598 pim3,LOC107732271 non-coding upstream 142673 15840351 ~ 15842537 (-)
LOC122353197 NA non-coding upstream 205209 15902887 ~ 15912782 (-)
G77702 NA other downstream 337188 15357685 ~ 15358232 (-)
LOC122352744 LOC107556605,LOC107709039,LOC107722845,LOC107690595,LOC107555077 other downstream 405748 15229969 ~ 15289672 (-)
G77671 NA other downstream 587668 15107137 ~ 15107752 (-)
vwa3a LOC107675622,LOC107552102,LOC107726804,LOC107717475 other downstream 1105521 14568330 ~ 14589899 (-)
im:6904045 NA other downstream 1210128 14484799 ~ 14485292 (-)
npffr1l1 npffr1l1,LOC107658551,LOC105907118 other upstream 194966 15892644 ~ 15897232 (-)
LOC122352931 LOC107758671,LOC107689893 other upstream 318993 16016671 ~ 16021774 (-)
cabp1b LOC107583405,LOC107746207,LOC107658587,LOC107758669,LOC107689072,LOC108440152,LOC103029522,LOC107373232,LOC102297829,LOC108232745,LOC103473718,LOC105890914,LOC107558082,LOC102200114 other upstream 332849 16030527 ~ 16057307 (-)
morn3 orai1b,morn3,LOC107746203,LOC107602056,LOC107689140,LOC107758661,LOC108425168,LOC107758660,LOC107683200 other upstream 474800 16172478 ~ 16177111 (-)
LOC122352830 LOC107689301,LOC107718705,LOC107602072,LOC107658608,LOC107658557,LOC107589035,LOC105888796,LOC106563065 other upstream 718230 16415908 ~ 16490354 (-)

Expression


Co-expression Network