XLOC_006598 (prim2)


Basic Information

Item Value
gene id XLOC_006598
gene name prim2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 23488282 ~ 23612369 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00012742
GCAGGTTTGTTGTTCTCTGGCAGTAACGTGTAAAAATTCTGTATACATCCAGCTTTTGTTTATACACCTAACGCTAATATCATTACCATGTTTAAGTGTGTAACGTTAAACACCCGCGAGGACTTTGCTGACATAAAGCAACATATATTACCTGCGTATAATGAACTACGTTAGCTTTTAACTTAGCATTGTTCTAGTTACACACATTAATAATCTGTCACAAAAGCTGTACTGCGTACTTATGTTATTTAAGTATTGTTACAAGTCTGGATTATTTAATGTTGTTCGGATCATGAATTATTTCAGTTGTAGCACTTTTTTAAAGCTTAAACTATAGCCCTATAACGTTATCTCTGTTGTGTAGGTTTAAAATGCAGTTTTCAGGCAGAAGGAAGAAGCTGATCAGCAGCTCTCAGAGTGATCTGTATGATCACTGTCTGCAGTTTTATGGTCAGCCTCCTCTGGACAACATCTCCCTcatcgagtttgagacctttgCAGTTGAGAGACTGAAATTGCTCAAAACTGTGGAAAACCTTGGAGTGAGCTAtgtgaaaactacagaccagtacaTCAAAAAACTGGAAGCTGAGTTTTTAAGCCTGAACTTTCCATTCAGGGCAGAAGTGGATGACCGAAAGGTTCCAGGAGTAACATCTGAATATGAGAAACGAAGAAAAGACCATATCTCCCATTTTATTCTCCGCTTGGCTTATTGCCAAACGGAGGACCTTAGGCGATGGTTTATCCAGCAGGAAATGGATCTTTTTCGTTACAGGTTCGGGATTCTTTCTTCAAAGCACAAGACTGAGTTTTTGCATAAGAATAATTTGAAGTATGAGACGGTTAGTGCAGAGGAAAAGAAATACCTAAGAGACAAGCTCATCAACTCCAGTTATGGATTAAGTGGAATCACACTAGAAGAATATGATTTCTACAGAGTCCCATTTCAGGATGCCCTGGATTTAGTGCGCACAAGGAAAGTCTACTTATTGGCTGGCAATGCTTACATTCCCCAAAATGAAATTGTCACCATTGTCCTGAATGACTTCCGCACAAGATTGTCCAAAGCACTTGCGgtGACTGCTCGATCTCTGCCAGCCGTACAGTCTGATGAACGCCTCCAGCCTCTTTTGAGCCACCTCAGCCATGCTTATGTGGGTCAGGATTACAGCAttcagaaaaatgttggaaagatTTCTCTGGAGCAAATTGATCCACTCTCAGGCAAGTCGTTTCCTCTATGTATGAGGCATCTCCACAAGGCACTGAGGGAGAACCACCACCTGCGGCACGGTGGACGCATGCAGTACGGCCTCTTCCTCAAGGGCATTGGTCTTACTCTGGAACAGGCCATGCAGTTCTGGAGGTCAGAGTTTGTCAAGGGGAAAGTTGATGCAGACAAGTTTGATAAAGCATATGCCTACAGCATCCGCCACATGTTTGGGAAGGAAGGCAAGCGCACTGACTACACCCCCTACAGTTGCATGAAGGTGATTTTGTCAAACCCACCCAGCCAAGGCGACTACCATGGGTGTCCATTCCGCCACAGCGACCCTGAACTGTTGAAACAGAAGTTGCAGTCTTATAAAATCGCTCCTGGTGGGATCAATCAGATTCTAGAGCTGGTCAAGGGAATGCACTATCAGCTGGCCTGCCAGAAGTACTTTGAGCTGACACACAGTGTTGAGGATGCTGGGTTTTCTCTCAATCATCCAAACCAGTACTTCACAGAGAGCCAGAAGCTTCTGGGTGGAGGCCAAGGCATCAAGAAAGAAGTGGAGATGTCACAAAAAAGCCAAGAAAATCCTCCCGGTGCGTCCCGTCCATCTCAGGCAAACCCTAAACAGGCCCAAGAGGAGATGGGGGATTTAGACTCCTTCTTCCAGGATGAATGATTTTGTAGAACCTAAGGAAAATACAGGGCTCTTACTTGTATTCACTGTTTAAGACACAATTGTCTTTTCACCATTAAAAAACTTTCATATCTGTTTTTTTACCTTGTCTTTATATTGATAAGATTCTTCTCAAAttacatgtttttaccaaaaaaaaaaaaaaa
>TCONS_00012743
GGAACGTCAGCTCCTTGGCGGGATTCAGGCCCCTGGAAGAGACAGGCAGGTTTAAAATGCAGTTTTCAGGCAGAAGGAAGAAGCTGATCAGCAGCTCTCAGAGTGATCTGTATGATCACTGTCTGCAGTTTTATGGTCAGCCTCCTCTGGACAACATCTCCCTcatcgagtttgagacctttgCAGTTGAGAGACTGAAATTGCTCAAAACTGTGGAAAACCTTGGAGTGAGCTAtgtgaaaactacagaccagtacaTCAAAAAACTGGAAGCTGAGTTTTTAAGCCTGAACTTTCCATTCAGGGCAGAAGTGGATGACCGAAAGGTTCCAGGAGTAACATCTGAATATGAGAAACGAAGAAAAGACCATATCTCCCATTTTATTCTCCGCTTGGCTTATTGCCAAACGGAGGACCTTAGGCGATGGTTTATCCAGCAGGAAATGGATCTTTTTCGTTACAGGTTCGGGATTCTTTCTTCAAAGCACAAGACTGAGTTTTTGCATAAGAATAATTTGAAGTATGAGACGGTTAGTGCAGAGGAAAAGAAATACCTAAGAGACAAGCTCATCAACTCCAGTTATGGATTAAGTGGAATCACACTAGAAGAATATGATTTCTACAGAGTCCCATTTCAGGATGCCCTGGATTTAGTGCGCACAAGGAAAGTCTACTTATTGGCTGGCAATGCTTACATTCCCCAAAATGAAATTGTCACCATTGTCCTGAATGACTTCCGCACAAGATTGTCCAAAGCACTTGCGgtGACTGCTCGATCTCTGCCAGCCGTACAGTCTGATGAACGCCTCCAGCCTCTTTTGAGCCACCTCAGCCATGCTTATGTGGGTCAGGATTACAGCAttcagaaaaatgttggaaagatTTCTCTGGAGCAAATTGATCCACTCTCAGGCAAGTCGTTTCCTCTATGTATGAGGCATCTCCACAAGGCACTGAGGGAGAACCACCACCTGCGGCACGGTGGACGCATGCAGTACGGCCTCTTCCTCAAGGGCATTGGTCTTACTCTGGAACAGGCCATGCAGTTCTGGAGGTCAGAGTTTGTCAAGGGGAAAGTTGATGCAGACAAGTTTGATAAAGCATATGCCTACAGCATCCGCCACATGTTTGGGAAGGAAGGCAAGCGCACTGACTACACCCCCTACAGTTGCATGAAGGTGATTTTGTCAAACCCACCCAGCCAAGGCGACTACCATGGGTGTCCATTCCGCCACAGCGACCCTGAACTGTTGAAACAGAAGTTGCAGTCTTATAAAATCGCTCCTGGTGGGATCAATCAGATTCTAGAGCTGGTCAAGGGAATGCACTATCAGCTGGCCTGCCAGAAGTACTTTGAGCTGACACACAGTGTTGAGGATGCTGGGTTTTCTCTCAATCATCCAAACCAGTACTTCACAGAGAGCCAGAAGCTTCTGGGTGGAGGCCAAGGCATCAAGAAAGAAGTGGAGATGTCACAAAAAAGCCAAGAAAATCCTCCCGGTGCGTCCCGTCCATCTCAGGCAAACCCTAAACAGGCCCAAGAGGAGATGGGGGATTTAGACTCCTTCTTCCAGGATGAATGATTTTGTAGAACCTAAGGAAAATACAGGGCTCTTACTTGTATTCACTGTTTAAGACACAATTGTCTTTTCACCATTAAAAAACTTTCATATCTGTTTTTTTACCTTGTCTTTATATTGATAAGATTCTTCTCAAAttacatgtttttaccaaaaaaaaaaaaaaa
>TCONS_00012744
TCACAGCTGTCTGCGGTTTGGCGACACCGCTACAGCAGGTCCCTGCTAATAGCTCTATATTTCATAGCGGAAAACGCCCTGCCACAACCCACTTGATTTTGATAAAGCATATGCCTACAGCATCCGCCACATGTTTGGGAAGGAAGGCAAGCGCACTGACTACACCCCCTACAGTTGCATGAAGGTGATTTTGTCAAACCCACCCAGCCAAGGCGACTACCATGGGTGTCCATTCCGCCACAGCGACCCTGAACTGTTGAAACAGAAGTTGCAGTCTTATAAAATCGCTCCTGGTGGGATCAATCAGATTCTAGAGCTGGTCAAGGGAATGCACTATCAGCTGGCCTGCCAGAAGTACTTTGAGCTGACACACAGTGTTGAGGATGCTGGGTTTTCTCTCAATCATCCAAACCAGTACTTCACAGAGAGCCAGAAGCTTCTGGGTGGAGGCCAAGGCATCAAGAAAGAAGTGGAGATGTCACAAAAAAGCCAAGAAAATCCTCCCGGTGCGTCCCGTCCATCTCAGGCAAACCCTAAACAGGCCCAAGAGGAGATGGGGGATTTAGACTCCTTCTTCCAGGATGAATGATTTTGTAGAACCTAAGGAAAATACAGGGCTCTTACTTGTATTCACTGTTTAAGACACAATTGTCTTTTCACCATTAAAAAACTTTCATATCTGTTTTTTTACCTTGTCTTTATATTGATAAGATTCTTCTCAAAttacatgtttttacc
>TCONS_00012745
GTTTAAAATGCAGTTTTCAGGCAGAAGGAAGAAGCTGATCAGCAGCTCTCAGAGTGATCTGTATGATCACTGTCTGCAGTTTTATGGTCAGCCTCCTCTGGACAACATCTCCCTcatcgagtttgagacctttgCAGTTGAGAGACTGAAATTGCTCAAAACTGTGGAAAACCTTGGAGTGAGCTAtgtgaaaactacagaccagtacaTCAAAAAACTGGAAGCTGAGTTTTTAAGCCTGAACTTTCCATTCAGGGCAGAAGTGtatgttcatttttttttaataacccaGGATGACCGAAAGGTTCCAGGAGTAACATCTGAATATGAGAAACGAAGAAAAGACCATATCTCCCATTTTATTCTCCGCTTGGCTTATTGCCAAACGGAGGACCTTAGGCGATGGTTTATCCAGCAGGAAATGGATCTTTTTCGTTACAGGTTCGGGATTCTTTCTTCAAAGCACAAGACTGAGTTTTTGCATAAGAATAATTTGAAGTATGAGACGGTTAGTGCAGAGGAAAAGAAATACCTAAGAGACAAGCTCATCAACTCCAGTTATGGATTAAGTGGAATCACACTAGAAGAATATGATTTCTACAGA

Function

symbol description
prim2 Predicted to enable 4 iron, 4 sulfur cluster binding activity; DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within DNA replication, synthesis of RNA primer. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human PRIM2 (DNA primase subunit 2).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-471 Predicted to enable 4 iron, 4 sulfur cluster binding activity; DNA binding activity; and metal ion binding activity. Predicted to act upstream of or within DNA replication, synthesis of RNA primer. Predicted to be part of alpha DNA polymerase:primase complex. Orthologous to human PRIM2 (DNA primase subunit 2).

Ensembl:

ensembl_id ENSDARG00000052721

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00012742 False 2062 mRNA 0.43 13 23488282 23612324
TCONS_00012743 False 1747 mRNA 0.45 14 23488282 23612369
TCONS_00012744 False 738 processed_transcript 0.46 5 23488297 23513803
TCONS_00012745 True 604 mRNA 0.40 5 23606693 23611960

Neighbor

gene id symbol gene type direction distance location
XLOC_006597 NA coding downstream 76651 23408029 ~ 23411631 (-)
XLOC_006596 si:dkey-103j14.5 coding downstream 217706 23233956 ~ 23270576 (-)
XLOC_006595 NA coding downstream 270464 23212759 ~ 23217818 (-)
XLOC_006594 kifbp coding downstream 393276 23083858 ~ 23095006 (-)
XLOC_006593 srgn coding downstream 413828 23070581 ~ 23074454 (-)
XLOC_006599 map3k21 coding upstream 22448 23634817 ~ 23666579 (-)
XLOC_006600 rgs17 coding upstream 115807 23728176 ~ 23756700 (-)
XLOC_006601 phactr2 coding upstream 307111 23919480 ~ 23956361 (-)
XLOC_006602 AL772289.1 coding upstream 348923 23961292 ~ 23961406 (-)
XLOC_006603 cog2 coding upstream 383701 23996070 ~ 24018916 (-)
XLOC_006471 BX537274.2 misc downstream 13223377 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 22662057 825904 ~ 826225 (-)
XLOC_006585 BX530068.1 non-coding downstream 640798 22843830 ~ 22847484 (-)
XLOC_006582 CR550304.1 non-coding downstream 703849 22778060 ~ 22784433 (-)
XLOC_006578 BX649385.1 non-coding downstream 1293114 22191361 ~ 22195168 (-)
XLOC_006605 CR762497.2 non-coding upstream 514694 24127063 ~ 24127179 (-)
XLOC_006607 CR762497.1 non-coding upstream 671301 24283670 ~ 24286390 (-)
XLOC_006611 NA non-coding upstream 734620 24346989 ~ 24351543 (-)
XLOC_006616 NA non-coding upstream 960717 24573086 ~ 24574746 (-)

Expression


Co-expression Network