ap4m1 (ap4m1,LOC107554303,LOC107702797,LOC107742404,LOC107720677,LOC107586161,LOC107675998)


Basic Information

Item Value
gene id ap4m1
gene name ap4m1,LOC107554303,LOC107702797,LOC107742404,LOC107720677,LOC107586161,LOC107675998
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 7866335 ~ 7871448 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249931.1
cacacacacacacacacagagctatGGCTGCGAGACCTGTACAATGTTTTACCATTAGACCTTAAACAGACTTTGGCTTTATACATTAAAGTTTCACTCACGGTAATAAAACACAGGTAGTGTTAATACCAATACAAAATCTCTTTTCTACATTTACGACGAGCACTTTAACAACACGGTAAAGAAAACATACCATAAGAACAATAAGTTGTCACAAACGTCTTTTTTCCACGTACtgatatgaataaaaagtgcatggtgtcacacacaaatacagacatcatcataaaagcataaaacgTAACTTAAGATAAAAGTTATAAGACGACATGatctattttacttttaataacgCAGGCTAgctttaaatgtacatttaacagTAACAGTTAGATCTCAATAGATATATAGTTTTTCCCTGAATTAACAGTGGcctacagtatttttttttttttttaactatagcatgttttttacagttaaataacCATTCCCCCTTTAGTGCAGTCCTTCAGCTATGACCAATGTTTGTTAAAGGCAAGCAGAGTTGTCAGAGATTTCAGTTCATGCCTCAGGCATGTGTTTCATGTTTTACCTCAGAATGCTTCATCCACCTATGCTTGGCGTCCTTCTCCACCTAGACTTGTTATTACTTCTGCATGAATAAGTACAGTTATATACGTTTCTTTTGTATAAAAGATTTGCACATGTTAAAtcataatgaaaaaattaatgtGTATAATGTTTTGAGAGTCGCTTTGCCCGTCGTCGTCGCTAAGCGGCCGTTCGTATTCCAGCTCAGTAGATGGCGGTAAACGTGACGGTTGATGCCTGAGTGCTCGCGAAGAAGAACAAACCGGCTGTTTACAGTCATGACAGTAACAGTAATGAAACATTTGAGCAGCTAAACGGGTTAACGTCGTTCACACGGAAGAATACAAATGACGGCGGATAAAGAAGCggattgatttttaatattatgaaaaagaATCGTGTGTGCTGAGCAAAATGATCAGTCAAATTTTCATCCTGTCATCAAAGGGAGATCACCTCATATATAAAGACTTCCGAGGAGAGGAGAGCAAAGACTCCATCAATGTCTTCTACGAGATGGTCACAGCTCTTAGTGGAGATCAGCCTCCGGTCGTCATGTCACACAAAGATCTTCATTTTATCCACGTAAGGCAGGGCGGGCTTTACTGGGTGGCGTCCACCAAAACAAACCCATCCCCCTTCACCATCGTTGAGTTCCTCAACAGGTTAGCAGCTCTCACGAAGGACTACTGTGGCAGTTTGTCAGAGAAATCTGTGCGAATGAATTTCGCTCTAATTTATGAGCTGCTGGATGAGATGGTGGACTTTGGTTATATACAGACGACCTCAACCGACATCCTGAAAAACTTCATTCAGACAGAAGCTGTTTCATCCAAACCTTTCAGTCTTTTTGACCTAAGTAATGTTGGTTTGtTTGGAGCTGAGACACAGCAGAGCAAAGTGGCCCCTAGTGTTGCAGCCAGCCGTCCTATAATGTCCAGTCGAGGAGAGCAGGGTGGAAAGAATGAGATCTTTGTGGATGTGATAGAAAGGCTGTCTGTTGTTATTGGCTCCAAGGGAGTTTTAATGAAAGCAGATATTCAGGGAGAGATacgaataaaatgttttctcccGACCTGTTCAGAGATGCGGATTGGACTGAATGAAGAGCTCAGTATTGGAAAGTCCCAGCTGAAAGGCTATAGTTCAGCTGTGCGTGTGGATGAATGCAGATTCCATCAAGCTGTCAAATTGGATGAATTTGATACTTTCAGAATTTTGAAAGTTTGTCCGAGTCAAGGAGAGCAAACAGTGATGCAGTATCAGCTGTGTGATGAGCTGCCGTGTGCGCCACCATTTCAGTTATTCCCCTCTGTAGAGAAAGACTATGTAAACAGGGTGTTGATTTTTCTTAAACTTAGATGTGATCTTCCTCCTAAAAGtacGGCTCTTAATGTTTCCATCACTGTTCCTGTGCCAAAAGGCTCTATAAGTATGTCTCAGGAGCTCAGTAGTCCTGACCAGACCGCTGAACTTCAGCCGAAGAACAAAGCCCTGCTCTGGGAGATCCCACGTTTCCCAGGAGGAGCGCAGCTGTCAGCATTGTTTAAGGTGGATGTTCCTGGTCTAAGCTCCGCCTCTTTGCTGGAGGTCGGCCCTGTCAGCATGTCATTCGAACTGCCCAAACAAACCTGCACCGGCCTTCAGATCCGCTTCCTCCGGCTCTCTCCAACTCAGACAGGACTATCACAACGCTGGGTTCGATATGTCACTCATTCTGACTCCTACACCATACGGATCTGACCTAACCAGACGGAAAGAACAGTGATCAAACTGCTGTGTGCCTCTTCCAGCcacaatttcagttttatttttatattttattttgttgggaCGTCTGTAATAATCTATGCATATGAACAAATTTGCAGTTTTgctcctttcatttttttttatttgaaatatactgaATCCAGAGATTTTTGgagatataaaaatattgtgtcaAGTATGACTGTCAAAATagtgtttctttatttaaaataaaataagcccaGAGgtgtataaatattg
>XM_043249932.1
acacacacacacacacacacagagctatGGCTGCGAGACCTGTACAATGTTTTACCATTAGACCTTAAACAGACTTTGGCTTTATACATTAAAGTTTCACTCACGGTAATAAAACACAGGTAGTGTTAATACCAATACAAAATCTCTTTTCTACATTTACGACGAGCACTTTAACAACACGGTAAAGAAAACATACCATAAGAACAATAAGTTGTCACAAACGTCTTTTTTCCACGTACtgatatgaataaaaagtgcatggtgtcacacacaaatacagacatcatcataaaagcataaaacgTAACTTAAGATAAAAGTTATAAGACGACATGatctattttacttttaataacgCAGGCTAgctttaaatgtacatttaacagTAACAGTTAGATCTCAATAGATATATAGTTTTTCCCTGAATTAACAGTGGcctacagtatttttttttttttttaactatagcatgttttttacagttaaataacCATTCCCCCTTTAGTGCAGTCCTTCAGCTATGACCAATGTTTGTTAAAGGCAAGCAGAGTTGTCAGAGATTTCAGTTCATGCCTCAGGCATGTGTTTCATGTTTTACCTCAGAATGCTTCATCCACCTATGCTTGGCGTCCTTCTCCACCTAGACTTGTTATTACTTCTGCATGAATAAGTACAGTTATATACGTTTCTTTTGTATAAAAGATTTGCACATGTTAAAtcataatgaaaaaattaatgtGTATAATGTTTTGAGAGTCGCTTTGCCCGTCGTCGTCGCTAAGCGGCCGTTCGTATTCCAGCTCAGTAGATGGCGGTAAACGTGACGGTTGATGCCTGAGTGCTCGCGAAGAAGAACAAACCGGCTGTTTACAGTCATGACAGTAACAGTAATGAAACATTTGAGCAGCTAAACGGGTTAACGTCGTTCACACGGAAGAATACAAATGACGGCGGATAAAGAAGCggattgatttttaatattatgaaaaagaATCGTGTGTGCTGAGCAAAATGATCAGTCAAATTTTCATCCTGTCATCAAAGGGAGATCACCTCATATATAAAGACTTCCGAGGAGAGGAGAGCAAAGACTCCATCAATGTCTTCTACGAGATGGTCACAGCTCTTAGTGGAGATCAGCCTCCGGTCGTCATGGCAGGGCGGGCTTTACTGGGTGGCGTCCACCAAAACAAACCCATCCCCCTTCACCATCGTTGAGTTCCTCAACAGGTTAGCAGCTCTCACGAAGGACTACTGTGGCAGTTTGTCAGAGAAATCTGTGCGAATGAATTTCGCTCTAATTTATGAGCTGCTGGATGAGATGGTGGACTTTGGTTATATACAGACGACCTCAACCGACATCCTGAAAAACTTCATTCAGACAGAAGCTGTTTCATCCAAACCTTTCAGTCTTTTTGACCTAAGTAATGTTGGTTTGtTTGGAGCTGAGACACAGCAGAGCAAAGTGGCCCCTAGTGTTGCAGCCAGCCGTCCTATAATGTCCAGTCGAGGAGAGCAGGGTGGAAAGAATGAGATCTTTGTGGATGTGATAGAAAGGCTGTCTGTTGTTATTGGCTCCAAGGGAGTTTTAATGAAAGCAGATATTCAGGGAGAGATacgaataaaatgttttctcccGACCTGTTCAGAGATGCGGATTGGACTGAATGAAGAGCTCAGTATTGGAAAGTCCCAGCTGAAAGGCTATAGTTCAGCTGTGCGTGTGGATGAATGCAGATTCCATCAAGCTGTCAAATTGGATGAATTTGATACTTTCAGAATTTTGAAAGTTTGTCCGAGTCAAGGAGAGCAAACAGTGATGCAGTATCAGCTGTGTGATGAGCTGCCGTGTGCGCCACCATTTCAGTTATTCCCCTCTGTAGAGAAAGACTATGTAAACAGGGTGTTGATTTTTCTTAAACTTAGATGTGATCTTCCTCCTAAAAGtacGGCTCTTAATGTTTCCATCACTGTTCCTGTGCCAAAAGGCTCTATAAGTATGTCTCAGGAGCTCAGTAGTCCTGACCAGACCGCTGAACTTCAGCCGAAGAACAAAGCCCTGCTCTGGGAGATCCCACGTTTCCCAGGAGGAGCGCAGCTGTCAGCATTGTTTAAGGTGGATGTTCCTGGTCTAAGCTCCGCCTCTTTGCTGGAGGTCGGCCCTGTCAGCATGTCATTCGAACTGCCCAAACAAACCTGCACCGGCCTTCAGATCCGCTTCCTCCGGCTCTCTCCAACTCAGACAGGACTATCACAACGCTGGGTTCGATATGTCACTCATTCTGACTCCTACACCATACGGATCTGACCTAACCAGACGGAAAGAACAGTGATCAAACTGCTGTGTGCCTCTTCCAGCcacaatttcagttttatttttatattttattttgttgggaCGTCTGTAATAATCTATGCATATGAACAAATTTGCAGTTTTgctcctttcatttttttttatttgaaatatactgaATCCAGAGATTTTTGgagatataaaaatattgtgtcaAGTATGACTGTCAAAATagtgtttctttatttaaaataaaataagcccaGAGgtgtataaatattg

Function

symbol description
ap4m1 Predicted to be involved in Golgi to lysosome transport and protein targeting. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in Golgi apparatus; early endosome; and membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle and trans-Golgi network. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 50. Orthologous to human AP4M1 (adaptor related protein complex 4 subunit mu 1).

NR:

description
AP-4 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12402 AP4M1; AP-4 complex subunit mu-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249931.1 True 2607 mRNA 0.41 15 7866338 7871448
XM_043249932.1 False 2578 mRNA 0.41 15 7866335 7871448

Neighbor

gene id symbol gene type direction distance location
LOC122353466 NA coding upstream 2423 7863779 ~ 7863912 (+)
tmem88a tmem88a,LOC107554311,LOC107720688,LOC107742406,LOC107586221,LOC107676001 coding upstream 48634 7812206 ~ 7817701 (+)
kdm6bb LOC107676007,LOC107742353,LOC107720684,LOC107586158,LOC107554308,LOC107678007 coding upstream 56252 7782188 ~ 7810083 (+)
efnb3a efnb3a,LOC107742355,LOC107720690,LOC107678015,LOC107586157,LOC107676033,LOC107554296 coding upstream 118939 7709173 ~ 7747396 (+)
gigyf1b gigyf1,LOC107554307,LOC107586156,LOC107676024,LOC107742356,LOC107678014 coding upstream 158115 7695316 ~ 7708220 (+)
med11 med11,LOC107720680,LOC107702800,LOC107676028 coding downstream 10437 7881885 ~ 7883525 (+)
c10h17orf49 zgc:103508,LOC107720679,LOC107742347,LOC107702799,LOC107675997,LOC107586165,LOC107554320,LOC105902403 coding downstream 14166 7885614 ~ 7889230 (+)
si:dkey-175g6.2 si:dkey-175g6.2,LOC107702794,LOC107720675,LOC107554299,LOC107586203,LOC107742340,LOC107676019 coding downstream 60635 7932083 ~ 7936387 (+)
slc25a1a slc25a1a,LOC107720673,LOC107554324,LOC107586170,LOC107708615,LOC108424536,LOC108276564 coding downstream 75858 7947306 ~ 7951626 (+)
ltn1 ltn1,si:dkey-175g6.5,LOC107720671,LOC107702790,LOC107708613,LOC107675987,LOC107554323 coding downstream 85386 7956834 ~ 7999036 (+)
G75591 LOC107720685,LOC107586160,LOC107676011 non-coding upstream 6623 7840598 ~ 7859712 (+)
G75593 LOC107678008 non-coding upstream 17099 7845219 ~ 7849236 (+)
G75583 NA non-coding upstream 31436 7806361 ~ 7834899 (+)
G75574 NA non-coding upstream 183895 7682154 ~ 7682440 (+)
G75502 NA non-coding upstream 377768 7487475 ~ 7488567 (+)
G75607 NA non-coding downstream 29775 7901223 ~ 7902731 (+)
G75629 NA non-coding downstream 164686 8036134 ~ 8069911 (+)
G75766 NA non-coding downstream 294000 8165448 ~ 8165704 (+)
G75774 NA non-coding downstream 413707 8285155 ~ 8285865 (+)
G75799 NA non-coding downstream 442113 8313561 ~ 8314122 (+)
trnat-agu_2 NA other upstream 4302 7861960 ~ 7862033 (+)
trnas-gcu_13 NA other upstream 4661 7861593 ~ 7861674 (+)
LOC122353465 NA other upstream 4956 7861246 ~ 7861379 (+)
si:ch211-237l4.6 NA other upstream 43817 7817810 ~ 7822518 (+)
G75496 LOC107720595,LOC107677995 other upstream 501004 7360984 ~ 7365331 (+)
arrb2a arrb2a,arrb2,LOC107742343,LOC107586162,LOC107676026 other downstream 1091 7872539 ~ 7880100 (+)
G75750 NA other downstream 230028 8101476 ~ 8102924 (+)
LOC122352912 fam136a,LOC107569401,LOC107562571,LOC107713366,LOC107744116,LOC107686460,LOC107688083 other downstream 708561 8580009 ~ 8581128 (+)
G75935 LOC107556871,LOC107718714,LOC107720665,LOC107592158 other downstream 841755 8713203 ~ 8716277 (+)
G75937 NA other downstream 862331 8733779 ~ 8734996 (+)

Expression


Co-expression Network