plppr1 (plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600)


Basic Information

Item Value
gene id plppr1
gene name plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3167723 ~ 3216811 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249935.1
TTTTCGAATCTATGCCCAATGAACACTGATGGATTAATTCAGGAATAATATACATCCATCGCACGATCGCCAACTGTGGAACTTTGACTGAATCGATGCAAAATGGCTTCAGATAATACACACCGTAGTTACTCCATCATACCATGCTTCATATTTGTGGAGTTGGTGATAATGGCCGGGACGGTGCTGCTGGCGTACTACTTTGAATGCACAGACACGTTTGGGATCCACATCCAGGGTTTCTTCTGTAACGACGCTGACCTGATGAAGCCGTACCCCGGGGTGGAGGAGAGCAGCTTCATCCCTCCGCTCATCCTCTACTGTGTGGTGGCAGCTGCTCCCACAGCCATCATATTTGTCGGTGAGATCTCCATGTATATCATGAAGTCCACTAGAGAAGCTCTCCTAGCCCAGGAGAAAACCATTGTGACGGGCGAGTGCTGCTACCTAAACCCTCTCATCCGCAGAATCATTAGGTTTATTGGTGTCTTCGCGTTTGGCCTGTTCGCCACCGACATCTTTGTCAACTCCGGCCAGGTAGCGACGGGCAATTTGGCGCCGTATTTCCTGAGCGTCTGCAAGCCAAATTACACCGGGATGGATTGTCACTTCAACCACCAGTTCATCGCCAATGGAAACATCTGCACCGGGAACCAGGTGGTGGTGGAGAGAGCCAGGAGGTCCTTCCCATCCAAAGACGCTTCGCTCAGTGTCTACTCCGCCGTCTACGTTACTATGTACATCACGAGCACCATCAAGACGAAAAGCAGTCGTCTGGCCAAGCCTGTACTTTGTCTGGGAATCCTGTGCGCTGCTTTCCTGACTGGATTGAACCGTGTATCAGAATACCGCAATCACTGCTCAGACGTCATCGCTGGGTTCATATTAGGAAGCTCAATAGCTCTGTTTCTGGGAATCTGTGTAGTGAACAACTTCAAAGGGACTCACTCCACTCCTACCAAACAGAAGCAGGAGGATTACCGCGGCCTTCCCTTGATGACATTCCCCCGCGTGGAAAGCCCTCTCGAGACACTCAGCGCACAGAACCATTCGGCGTCCATGACTGAAGTCACATGACTAAGGGGGCAGCACCGGGTCACGTTCGCTTCACCTCAACACTTCTAGgcacaaaaagtttttttgtactgtggcatactgtaaaaaaaaaaaaaaaaagtaaaagaaaagaaaacgacGGTATTATGTTGTAACTAGTTGTACCTAGAAGCAgctgttttgtacattttgtataaGAGAGTGCTGTAGCTTTTCCTCATAACGTCGACACTGCTCAATTCATGTCCAGATTTCTGCCTTCGTCATGTTTTACatcacaaaaagtaaatatatacagtctatatataatgtaattcaaatatcGATGTTGTTATGTGGTATTTGTACaaagaatgattttatttagatttttttcctgtacatttttggacaaaagatcattttgtattctttttgtTATCTGTATAAAGCATTTTGATCAACTTTGCCTGCTGATTTTCCAGGAATGTTTTTGGTATACCTATTTTTTTGGTGTAAGATTTAAAGAAAACGTGTTGAATTGTTACGCGTCGTCGTATCGGGTTCTCCTCGGGCATCTTTGAATGGCCATGTGCTCAGCATGAAATACACAACACTGTTTGAATAACCTGTTATTCTCgacttgtgttttgttttttctttaaagtttgcatttcatttgaaatgctaaatatattttcctGAGTAGTCTGTCAAATAAATAGTCTGTAGCTGAGTCCAA

Function

symbol description
plppr1 Predicted to enable lipid phosphatase activity and phosphatidate phosphatase activity. Predicted to be involved in phospholipid dephosphorylation; phospholipid metabolic process; and signal transduction. Predicted to act upstream of or within nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system; neural tube; and somite. Orthologous to human PLPPR1 (phospholipid phosphatase related 1).

NR:

description
PREDICTED: lipid phosphate phosphatase-related protein type 1 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19581 LPPR1_2_5; lipid phosphate phosphatase-related protein type 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249935.1 True 1777 mRNA 0.44 8 3167723 3216811

Neighbor

gene id symbol gene type direction distance location
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding downstream 203290 2898351 ~ 2964433 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding downstream 316995 2829977 ~ 2850728 (-)
musk musk,LOC107653500 coding downstream 358737 2796845 ~ 2808986 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding downstream 371499 2789553 ~ 2796224 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding downstream 379946 2782151 ~ 2787777 (-)
LOC122352385 LOC101886557 coding upstream 42866 3259677 ~ 3260615 (-)
snx30 snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846 coding upstream 357485 3574296 ~ 3586506 (-)
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding upstream 373456 3590267 ~ 3594821 (-)
hnrnpdl hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490 coding upstream 391156 3607967 ~ 3612283 (-)
tmem150c tmem150c,LOC107558260 coding upstream 400704 3617515 ~ 3625783 (-)
G74459 NA non-coding downstream 118205 3049232 ~ 3049518 (-)
G74455 NA non-coding downstream 277775 2889445 ~ 2889948 (-)
G74436 NA non-coding downstream 386207 2780642 ~ 2781516 (-)
G74367 NA non-coding downstream 707571 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 712861 2453158 ~ 2454862 (-)
G74533 NA non-coding upstream 92976 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 233726 3450537 ~ 3454994 (-)
G74551 NA non-coding upstream 370624 3587435 ~ 3587894 (-)
G74574 NA non-coding upstream 482794 3699605 ~ 3700769 (-)
G74614 LOC107715880,LOC107702582,LOC107558262,LOC107560412,LOC107670041,LOC107737037 non-coding upstream 563248 3780059 ~ 3834370 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 400528 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 970294 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 1320821 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1679715 1483399 ~ 1488008 (-)
G74031 NA other downstream 1693845 1466751 ~ 1473878 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 120528 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 384801 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 688803 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 1802496 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3321311 6538122 ~ 6540973 (-)

Expression


Co-expression Network