LOC122352515 (ddx56,LOC107733287,LOC107751685)


Basic Information

Item Value
gene id LOC122352515
gene name ddx56,LOC107733287,LOC107751685
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 11081639 ~ 11138691 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249947.1
TACTCCTCCGGTGCGGCGGGGGGAGCTGAGGCGCAGCGGGGATTTATGTCTTGCTCGTTTGTGCGCGCGGACGCACACGTGTGAAAATGGAGGACGATACGCTGCAGTTTCACGAGATGGGCTTAGACGATCGGCTGTTAAAGGCTCTGGCTGATTTAGGCTGGTCTCAACCCACCCTGATCCAGGAGAAAGCCATCCCGCTGGCCCTCGAGGGCAAAGATCTGCTGGCGCGGGCTCGAACCGGATCGGGAAAAACCGCAGCCTACGCGATCCCGCTCATCCAAAGAATCCTCGCGTCAAAACAGACCGTACGTGAGCAGGCCGTCAGAGCTCTAGTCCTGGTCCCGACCAAAGAGCTGGGCCAGCAGGTCCAGACCATGATCCGACAGCTCACTGCGTTCTGTGGCAGAGAAGTACGAGTGGCCAACATCTCCGGGAAAGCAGAAATATCGGCTCAGaagCCGATTTTAATGGAGAAGCCAGACATTGTTGTCAGCACGCCGTCCCGTGTTCAAGCCCACATCAACGCCCAAAACCTGCAGCTTCAGTCTTCGTTGGAGATGCTGGTCGTTGACGAGGCCGACCTCATCTTCTCGTTTGGGTTTGAGGCGGACTTGAAAAGCCTGCTGTGTCACTTGCCGAAGATCTACCAGGCGTTCCTCATGTCGGCGACTCTGAATGAAGACGTCCAGGCACTGAAGGAGCTGGTTCTTCACAatcctGTGACTCTGAAGCTCCAGGGCTCTCAGCTGCCTGACAGCTCTCAGCTCCAGCAGTACAGCATCCGGTGCGAGGAGGAGGACAAGTTCCTGATCATCTACACGCTCCTGAAGCTCGGCCTGGTTCGAGGGAAGTCGCTCGTGTTTGTCAGCGACGTGGACCGCTGTTACCGGCTCAAGCTGTTTCTGGAGCAGTTCAGCATCCCTGCGTGTGTCCTGAACTCGGAGCTGCCCGTTCACTCCAGGTGCCACATCATCACTCAGTTTAATCAAGGCTTCTACAATTACATAATCGCCACAGATGAGGAGGGACTGGAGAATCCTGCTGGACCTTCCCAGAAAACGAAGACCAGCGAAGACaagggaaagaagaaaaagaactCTGGGAAGAAAGGAAAAGACAAGGAATATGGCGTTTCCAGAGGAATCGACTTTCACAACGTGTCTAATGTGATCAACTTTGATTTTCCCACTTCAGTTGAGTCCTACATCCACCGTGTCGGCAGAACGGCTCGTGCGGATAATCCCGGGACGGCGCTCTCCTTCATATCACATACAGAAATTCCCACGCTCACACAGGTTGAAAACGCTCTTGCTGGAGaCAACACACATGACCATGTTTTGAAGCCGTACGGGTTCAAAATGGAGGAAATCGAGGGATTCAGATACAGGTGTCGGGATGCCATGAGATCGGTGACGAAGCAGGCGGTGAAGGAGGCCAGGCTGAAGGAGATCAAGCAGGAGCTGCTCAATTCAGAGAAACTCAAGACGTACTTTGAAGACAATCCCAGAGACCTGCAGCTGCTGCGACACGACAAGGAGCTTCATCCGGCCGTCATCAAACCTCACCTGAAAAACGTGCCCGATTACCTGGTCCCAGCAGCGCTGAAAAGTCTCGTCAATCCTCTTAAACAGCGCAAGAAGAAGTATAAAGCAGGCGGCGTGACGCTGACCAGCTTTAAAaaGAATTTCAGAGGTAAAAACCCACTGAAGAGCTTTCGCTTCACGAAGAAGTCGTCTGCAAAGAAAGCTGGGAAATCCTAAAGGCAGAAGAGCCTGTGAGACATTGGATGTTGAGGAAAATCCTGACATATAACTCTTCTTGGGGATAACTGTGACTGTCATCCTGAACGACACGCTTGAGATCAGAGTCCACCAGAATCAGAGACATCCTGTCTTAATGATTTTGTCGAATACTGAAagtttaatattgtatttttcattaatgcTAAGACTCTACTTCATAAAGTGTCTTGTGTTCTGATTTTGTTTATAAAGTTTTAGCGCTGAATAATCTTCAAAATaggcttatttttatttttcatttaaatctgaattttaaaaagttacttttcATTACTTGttctcatttttctttaaaagaaaatttaacTTGAAT

Function

symbol description
ddx56 Predicted to enable several functions, including ATP binding activity; RNA helicase activity; and nucleic acid binding activity. Predicted to be active in nucleolus. Orthologous to human DDX56 (DEAD-box helicase 56).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DDX56

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K14810 DDX56, DBP9; ATP-dependent RNA helicase DDX56/DBP9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249947.1 True 2118 mRNA 0.50 14 11081639 11138691

Neighbor

gene id symbol gene type direction distance location
cltca cltca,cltc,LOC107548879,LOC107744621 coding downstream 2221 11046407 ~ 11079418 (-)
med13a med13,LOC107693951,LOC107744626,LOC107699258,LOC107747042,LOC107548827 coding downstream 135924 10892793 ~ 10945715 (-)
ints2 ints2,LOC107744627,LOC107699256,LOC107747027,LOC107693886 coding downstream 189875 10873812 ~ 10891764 (-)
auts2a auts2,LOC107693947 coding downstream 318742 10481653 ~ 10762897 (-)
cnih2 cnih2,LOC100706298,LOC107718764,LOC107091387 coding downstream 683415 10390116 ~ 10398224 (-)
btg3 btg3,LOC107699262,LOC107744619,LOC107747057,LOC107693957,LOC107548882,LOC107578493 coding upstream 6694 11145385 ~ 11149832 (-)
LOC122352533 LOC107747056,LOC107693900,LOC107548843,LOC107548828 coding upstream 12420 11151111 ~ 11158734 (-)
LOC122352716 LOC107576779 coding upstream 29434 11168125 ~ 11172314 (-)
alcama alcama,LOC107548884,LOC107693963,LOC107576815,LOC107699268 coding upstream 152207 11290898 ~ 11350637 (-)
si:ch211-103f14.3 LOC107693965,LOC107747051,LOC107548846,LOC107699269,LOC107744635,LOC107576832 coding upstream 313932 11452623 ~ 11457502 (-)
LOC122352521 NA non-coding downstream 36786 11026069 ~ 11044853 (-)
LOC122352520 NA non-coding downstream 42839 11035692 ~ 11038800 (-)
G76632 NA non-coding downstream 87213 10994218 ~ 10994426 (-)
G76622 NA non-coding downstream 94404 10959936 ~ 10987235 (-)
LOC122353057 NA non-coding downstream 131172 10947032 ~ 10950467 (-)
G76657 NA non-coding upstream 79478 11218169 ~ 11290840 (-)
G76662 cblb,LOC107548831,LOC107699267,LOC107576804,LOC107693962,LOC107747038 non-coding upstream 95681 11234372 ~ 11235690 (-)
G76693 NA non-coding upstream 347215 11485906 ~ 11486428 (-)
G76755 hspa8,LOC100305036,LOC101075813,LOC105019107,LOC107662768,LOC107693988 non-coding upstream 563180 11701871 ~ 11766210 (-)
LOC122353234 NA non-coding upstream 1309851 12448542 ~ 12453651 (-)
G76625 NA other downstream 42908 11017110 ~ 11038731 (-)
rps6kb1a rps6kb1a,LOC107747022,LOC107548877,LOC107744622,LOC107699259,LOC107693887 other downstream 97901 10972881 ~ 10983738 (-)
G76498 NA other downstream 601450 10478059 ~ 10480189 (-)
G76438 NA other downstream 698330 10380096 ~ 10383309 (-)
fgf13b fgf13,fgf13b,LOC107555168,LOC107718748,LOC107720625,LOC107701151,LOC107548853,LOC107693932,LOC108444526 other downstream 797974 10267354 ~ 10283665 (-)
LOC122352715 LOC107693960,LOC107747020,LOC107744618,LOC107699265 other upstream 37878 11176569 ~ 11207252 (-)
ccdc83 NA other upstream 366619 11505310 ~ 11584960 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other upstream 1540299 12678990 ~ 12769417 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other upstream 1643662 12782353 ~ 12789095 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other upstream 2353582 13492273 ~ 13533064 (-)

Expression


Co-expression Network