ccna1 (ccna1,LOC107728895,LOC107686159)


Basic Information

Item Value
gene id ccna1
gene name ccna1,LOC107728895,LOC107686159
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13544044 ~ 13546323 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249960.1
AAAAGGTTTTAGCGAGACAATCAGTGTCAAAGCACTTTGATCCCCTCACCGAAATTTGATTGGTTCTTTTAAGAGTTTAAAGCAACAAGAGAATAAGATGGCGTCTCGTGGCTTCGCTCCTCTGTCCAGTCGTCAGGAGAACCTCGTGGGCCTGGGGAGAGCGGATGGCCTGCGCGCTCACAAGCCCGGCCAGAGGGTCGTGCTCGGTGTCTTGACCGAAAACGATCAGCATAATCGAGTATTTGGTCAGGTTTCGTCCAAATATGAGCCAGCTTTCCGTGATTCATCGAGCCGTGACGTCAGCGCTACGCTGAGTGGTCACGTGGTCGAGCCAGTCATCGCGCAGACAACCAAACAATCCCCCTCCTGTTTGCTGCCCTGTGAACTTCTGTTAGTAGATGATGCTGTCCAAGATCTTGATTCAGgGTCTTGTATGGATTCTTCCATGCAATCACTGCTGGAGGAAGAGGCCGCTGCTTCTGCGGATGTCCTGTGTGTTCCAGAATATGCTGAGGACATCCACAGATACCTGCGTGAATGTGAAGTTAAGTACAGGCCGAAGCCTGGCTATATGAGAAAGCAGCCTGACATTACCAACTGTATGAGGGTCATCCTTGTCGACTGGCTGGTCGAGGTTGGCGAGGAATACAAGCTGTGCTCGGAGACGCTCTACTTGGCTGTCAACTACCTGGACCGCTTCCTTTCGTGCATGTCTGTCCTGAGAGGAAAATTGCAGCTTGTGGGAACAGCTGCCGTACTCCTGGCTGCGAAATACGAGGAGGTGTATCCTCCGGAAGTGGATGAGTTTGTGTACATCACGGATGACACCTACACAAAGAAACAGCTGCTTCGGATGGAGCAGCACCTGCTCCGAGTGCTGGCTTTCGACATGACCGCACCCACAGCTCGCCAGTTTTTAATGCAGTACACGCTGGAGGAGCATATCTGTGCCAGGACCGTAAACCTTGCTTTGTATCTTTCAGAGTTGAGCCTGCTTGAGGTGGATCCCTTTGTGCTGTATCTGCCTTCCAAGACTGCTGCAGCTGCATATTGTCTGGCAAATTACACTCTAAATGGGGTTTTGTGGCCTGAGAACCTGTATGCCTTTACTGGTTACTCGCTGGCAGTGATCAGCCCATGTCTCAAGGAGCTTCACAAACTCCATCTAGGTGCTGCAGGTCGCCCCCAACAGGCTATCCAGGAGAAGTACAAGAGCTTAAAATACTGTAGCGTGTCCCTGCTCGAGCCTGTGGAGTCTCTACCTCTCCCTTGATGTTCGTGACCTACACCGGTTGAGGCCAACAAGTGAACTGCAGCGCTTAAGTCTACTGTAAATAATGATTGAACCTTTTTTAAATGTggcttttaaatttttaatgtgatttttatcatAGTTTGCTTAAGACAAAAGTAAACGCGTGACTTGTTTCTCTGTAAATCCAACATGCTGTTGGTCTGAAGGCTATTATCTCCCCTCAGTATGAAATGAACAAATGGTTTTGTAACACTTTGTCTTTTCCTTAGGGTTTCTTTCTGGTATaccatgtgttttatttgtaaactaCATGCATTATCACGTACTTGCTGAATTTCAATAAATGAAACGAGTTACA
>XM_043249961.1
AGCGAGACAATCAGTGTCAAAGCACTTTGATCCCCTCACCGAAATTTGATTGGTTCTTTTAAGAGTTTAAAGCAACAAGAGCAGAATAAGATGGCGTCTCGTGGCTTCGCTCCTCTGTCCAGTCGTCAGGAGAACCTCGTGGGCCTGGGGAGAGCGGATGGCCTGCGCGCTCACAAGCCCGGCCAGAGGGTCGTGCTCGGTGTCTTGACCGAAAACGATCAGCATAATCGAGTATTTGGTCAGGTTTCGTCCAAATATGAGCCAGCTTTCCGTGATTCATCGAGCCGTGACGTCAGCGCTACGCTGAGTGGTCACGTGGTCGAGCCAGTCATCGCGCAGACAACCAAACAATCCCCCTCCTGTTTGCTGCCCTGTGAACTTCTGTTAGTAGATGATGCTGTCCAAGATCTTGATTCAGgGTCTTGTATGGATTCTTCCATGCAATCACTGCTGGAGGAAGAGGCCGCTGCTTCTGCGGATGTCCTGTGTGTTCCAGAATATGCTGAGGACATCCACAGATACCTGCGTGAATGTGAAGTTAAGTACAGGCCGAAGCCTGGCTATATGAGAAAGCAGCCTGACATTACCAACTGTATGAGGGTCATCCTTGTCGACTGGCTGGTCGAGGTTGGCGAGGAATACAAGCTGTGCTCGGAGACGCTCTACTTGGCTGTCAACTACCTGGACCGCTTCCTTTCGTGCATGTCTGTCCTGAGAGGAAAATTGCAGCTTGTGGGAACAGCTGCCGTACTCCTGGCTGCGAAATACGAGGAGGTGTATCCTCCGGAAGTGGATGAGTTTGTGTACATCACGGATGACACCTACACAAAGAAACAGCTGCTTCGGATGGAGCAGCACCTGCTCCGAGTGCTGGCTTTCGACATGACCGCACCCACAGCTCGCCAGTTTTTAATGCAGTACACGCTGGAGGAGCATATCTGTGCCAGGACCGTAAACCTTGCTTTGTATCTTTCAGAGTTGAGCCTGCTTGAGGTGGATCCCTTTGTGCTGTATCTGCCTTCCAAGACTGCTGCAGCTGCATATTGTCTGGCAAATTACACTCTAAATGGGGTTTTGTGGCCTGAGAACCTGTATGCCTTTACTGGTTACTCGCTGGCAGTGATCAGCCCATGTCTCAAGGAGCTTCACAAACTCCATCTAGGTGCTGCAGGTCGCCCCCAACAGGCTATCCAGGAGAAGTACAAGAGCTTAAAATACTGTAGCGTGTCCCTGCTCGAGCCTGTGGAGTCTCTACCTCTCCCTTGATGTTCGTGACCTACACCGGTTGAGGCCAACAAGTGAACTGCAGCGCTTAAGTCTACTGTAAATAATGATTGAACCTTTTTTAAATGTggcttttaaatttttaatgtgatttttatcatAGTTTGCTTAAGACAAAAGTAAACGCGTGACTTGTTTCTCTGTAAATCCAACATGCTGTTGGTCTGAAGGCTATTATCTCCCCTCAGTATGAAATGAACAAATGGTTTTGTAACACTTTGTCTTTTCCTTAGGGTTTCTTTCTGGTATaccatgtgttttatttgtaaactaCATGCATTATCACGTACTTGCTGAATTTCAATAAATGAAACGAGTTACA

Function

symbol description
ccna1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin A2-CDK2 complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CCNA1 (cyclin A1).

NR:

description
cyclin-A1

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0005634 nucleus cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K06627 CCNA; cyclin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249960.1 True 1613 mRNA 0.48 9 13544044 13546323
XM_043249961.1 False 1606 mRNA 0.48 9 13544044 13546313

Neighbor

gene id symbol gene type direction distance location
ccdc169 LOC107686219,LOC107728839,LOC107589822 coding downstream 6076 13533751 ~ 13537968 (-)
rfc3 rfc3,LOC107589808,LOC107728889,LOC107577751,LOC107691679 coding downstream 220155 13319875 ~ 13323889 (-)
zar1l zar1l,LOC107686155,LOC107589787,LOC107728846,LOC107734432,LOC107691709,LOC107577757 coding downstream 232969 13309532 ~ 13311075 (-)
hunk hunk,LOC107686151,LOC107728887,LOC107734458,LOC107577711,LOC107691675,LOC107588971 coding downstream 357853 13178586 ~ 13186191 (-)
eva1c LOC107686146,LOC107588947,LOC107728854,LOC107734450,LOC107691670,LOC107577635 coding downstream 374829 13164709 ~ 13169215 (-)
smad9 smad9,LOC107728873 coding upstream 12155 13558478 ~ 13565616 (-)
alg5 alg5,LOC107728859,LOC107697411,LOC107589073,LOC107577823 coding upstream 20221 13566544 ~ 13571292 (-)
supt20 supt20h,supt20,LOC107728858,LOC107589048,LOC107697409 coding upstream 28108 13574431 ~ 13588126 (-)
c10h21orf91 zgc:110006,LOC107697414,LOC107734464,LOC107686165,LOC107589110,LOC107728860 coding upstream 42986 13589309 ~ 13608152 (-)
ripk4 ripk4,LOC107589146,LOC107577855,LOC107686166 coding upstream 65821 13612144 ~ 13622868 (-)
G77284 NA non-coding downstream 55211 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 215151 13328642 ~ 13328893 (-)
G77220 kl,LOC107577734,LOC107589796,LOC107728890 non-coding downstream 228470 13313194 ~ 13315574 (-)
G77208 NA non-coding downstream 333098 13210616 ~ 13210946 (-)
G77157 NA non-coding downstream 508459 13033741 ~ 13035585 (-)
LOC122352841 NA non-coding upstream 1931 13548254 ~ 13556657 (-)
G77294 NA non-coding upstream 9233 13555556 ~ 13556192 (-)
G77315 NA non-coding upstream 123649 13669972 ~ 13670446 (-)
G77349 NA non-coding upstream 244998 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 253690 13800013 ~ 13800912 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 429 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 10980 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 754949 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 774627 12678990 ~ 12769417 (-)
ccdc83 NA other downstream 1959084 11505310 ~ 11584960 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other upstream 96861 13643184 ~ 13654413 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 259781 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 655939 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 658093 14204416 ~ 14208006 (-)
G77443 NA other upstream 688183 14234506 ~ 14264322 (-)

Expression


Co-expression Network