tbc1d10ab (tbc1d10a,LOC105895496,LOC106579927)


Basic Information

Item Value
gene id tbc1d10ab
gene name tbc1d10a,LOC105895496,LOC106579927
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 637670 ~ 649638 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249975.1
CCCCCTCGAGCGCGCGGCGGGGTGTTTAGCGCGCGCGCGCCTCCTCGGTCTCACACGCAAAACGCTCGTAAACACAGATTACgtgaaataagattaaaaacGATCGCGTCAGAAACATGACAGAAGTGCTGACTTCACAACACAGCGAGTCTGAGTTTTCTTCGTTCGCTCGGAGGGTGTTCCTGCCGCGCTTTTCACGGCGGGTTAGCGCGTTAGCTTAGAACTCTTCCAGTTCTGATTTGTTTGACAGAATCTGGCAGAAGACGGACGAGAAGAGTTTCCTTCAGTTCGGTCGACGAGAAATGACCGGCGAGCCGCTAGCCGTCCTCCAGGTGGAGGGCTATCATCACTTGGCTAAGCTAAGCTAAGTTCATGCAGTCGTTTATATCATGTGTTTCTAAGCGCGTCTTCTGTCAGACTCTCGCTGGTAAATGTAGCTAGTAAACATCCACCATGACCTGCCAGGGTCATCCAAACCGTTAGTGAGGCTCGAGCTCGGCGTGTTTGAGGAAACCCACTGTCTGTGTGTCGAAACACGCGTTTATTCAAGCGAGTGAATCTCGTGCTCGGCATGGAGAAAGCCCCGGCGGCGAACGGAGTGCAGCGGGGCGCGGCGGAGCGTCCGGCCGAGCAAGAGCGCTCTTCTCCGGGCTTCGACTCGGAGCTCAACGGCGTCCAGACCGACAGATACGGGTTCATAGGAGGAGCTCAGCAGAGCCCGGGAGACGAGGCTGATGTTCCTCCAGAAGTGCTCCGGCTGAGAGAAGCTAAATGGCTGGACATGCTCAACAGCTGGGATAAGTGGATGGCCAAAAAACACAAGAAGGTGAAGCTGCGCTGTCAGAAAGGAGTTCCTCCGTCGCTCAGAGGCCGAGCGTGGCTTTATCTCTCCGGTGGGAAAGTCAAGAAAGAGCAGAATCTGGGAAGATTTAAGGAGTTGGACCGTCAGCCCGGAGATCCTAAATGGCTGGATGTGATCGAGAAAGACCTCCACAGACAGTTTCCCTTCCACGAGATGTTCGTAGCTCGAGGAGGCCACGGGCAGCAGGACCTGTTCCGTGTGCTGAAGGCGTACACCCTGCACAGACCCGAGGAGGGGTACTGTCAGGCTCAAGCCCCGATCGCTGCGGTGCTGCTCATGCACATGCCCGCCGAGGATGCGTTCTGGGGTCTGGTCCAGATCTGTGAGAAGTACCTGCCTGGATACTACAGCGCTGGCCTGGAGGCCATCCAGTTAGACGGAGAGATCCTGTTCGCTCTGCTCAAGCGTGTGTGTCCCGCGGCCCACCGGCACCTGAAGAAACACAAGATTGACCCCATCCTGTACATGACCGAGTGGTTCATGTGTGCCTTCTCCAGGACGCTGCCCTGGGCGTCTGTGCTGCGCGTCTGGGACATGTTCTTCTGTGAGGGAGTGAAGATCATCTTCCGCGTGGGTCTGGTGCTGCTGAAGTGCATGCTGGGATCTCAGGAGAAGCTGAAAGCGTGTCAGGGCCAGTATGAGACCATGGAGCTGCTCAGGTCTATTGAGCCTCGATACATGCAGGAGGCTTTCCTCGTTCAAGagGTCCTAGAGCTGGCCGTGTCTGAGCGAGACATAGAGAAGGAGCATCTGTCTCAGCTCCGGCGCTGGAAGGAGACCCACGGAGAGCTGCACTGTAAATCCCCTCCCAGAATGCACGGCGCCAAAGCCATCATGGCCGCCGAGCCGCCCAGTCGCCAGGACCTCAGACAAAACCCCACGATCATCGTCGAAGTGACGGAGACGGGGAAATCTACTAAAAAGACCAAAGGCACGAAAACAAGCTCGCCGCCTCCTAACCCGTACCCGCTGCCCAGCCAATCACAGCCCCTGCAGAAAGACACGCCCCTGCGGGCGTCCAATCAGAGTCTGAGTAGCGAGCACGACACCTACCTGTAAAGAGCTGA

Function

symbol description
tbc1d10a Enables PDZ domain binding activity. Involved in activation of cysteine-type endopeptidase activity and retrograde transport, endosome to Golgi. Located in plasma membrane.

NR:

description
PREDICTED: TBC1 domain family member 10A-like

GO:      GO:0005097,GO:0032313

KEGG:

id description
K19944 TBC1D10; TBC1 domain family member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249975.1 True 1929 mRNA 0.57 10 637670 649638

Neighbor

gene id symbol gene type direction distance location
pptc7b pptc7b,LOC107744096,LOC107713343,LOC107685147,LOC106563180,LOC105909313 coding upstream 3678 623272 ~ 633992 (+)
hvcn1 LOC107686438,LOC107744097,LOC107562590,LOC107685148,LOC107575472 coding upstream 20927 613874 ~ 616743 (+)
mtrex skiv2l2,LOC107744101,LOC107571110,LOC107713350,LOC107686493 coding upstream 73516 536408 ~ 564154 (+)
pstpip2 pstpip2,LOC107744171,LOC107685173 coding upstream 122034 507604 ~ 515636 (+)
sub1a sub1,LOC107686443,LOC107562553,LOC107685153,LOC107713349,LOC107571107,LOC107552599 coding upstream 131550 504360 ~ 506120 (+)
aplnrb aplnrb,LOC107713340,LOC107685146,LOC107686435,LOC107562592,LOC107744094 coding downstream 14313 663951 ~ 665777 (+)
LOC122353206 NA coding downstream 24970 674608 ~ 680564 (+)
itga1 itga1,LOC107686433,LOC107685143,LOC107595560,LOC107562550 coding downstream 59856 709494 ~ 748934 (+)
LOC122352656 itga2,LOC107713336,LOC107744146,LOC107686486 coding downstream 101842 751480 ~ 765669 (+)
itga2.2 itga2.2,LOC107686432,LOC107744091,LOC107685142,LOC107713338,LOC107597671 coding downstream 117054 766692 ~ 790635 (+)
G73560 NA non-coding upstream 208400 428856 ~ 429270 (+)
G73559 apbb1,LOC107750985,LOC107673752,LOC107565841 non-coding upstream 210155 424953 ~ 427515 (+)
G73519 NA non-coding upstream 240569 349033 ~ 397101 (+)
G73523 NA non-coding upstream 289763 347548 ~ 347907 (+)
G73465 NA non-coding upstream 345403 287869 ~ 292267 (+)
G73589 NA non-coding downstream 2906 652544 ~ 653003 (+)
G73588 NA non-coding downstream 3976 653614 ~ 673309 (+)
G73656 NA non-coding downstream 145697 795335 ~ 795689 (+)
G73710 NA non-coding downstream 155732 805370 ~ 805665 (+)
G73711 NA non-coding downstream 157980 807618 ~ 807846 (+)
c10h5orf63 LOC107715565,LOC107657471,LOC107576909 other upstream 238811 396440 ~ 398859 (+)
LOC122352377 fbn2,LOC107705843,LOC107575594,LOC107565844,LOC562634 other upstream 351430 242243 ~ 286240 (+)
pmaip1 NA other downstream 33468 683106 ~ 774374 (+)
isl1b NA other downstream 42486 692124 ~ 695923 (+)
fstb fstb,LOC107685190,LOC107713293,LOC107686430,LOC107744087,LOC107597631,LOC107595577 other downstream 146373 796011 ~ 801923 (+)
rbm18 rbm18,LOC107597621,LOC107595545,LOC107685132,LOC107686423 other downstream 284431 934069 ~ 945860 (+)
LOC122352734 LOC107744074,LOC107597614,LOC107686419,LOC107685127,LOC101884949,LOC107713324,LOC107595548 other downstream 428058 1077696 ~ 1084039 (+)

Expression


Co-expression Network