sub1a (sub1,LOC107686443,LOC107562553,LOC107685153,LOC107713349,LOC107571107,LOC107552599)


Basic Information

Item Value
gene id sub1a
gene name sub1,LOC107686443,LOC107562553,LOC107685153,LOC107713349,LOC107571107,LOC107552599
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 504360 ~ 506120 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043249978.1
ACACTTCCCATCATGCAGTTCTTCAAGGGCGCTTCCGCAAGCGCGCGCTCTGCACAGGTTTCGCAGAAACGGATGTTCGCGCGCATCGAATGAGCTTCTGACTTAACTCTATTATACCCCACGTTTACCTTAAGACATCACtgcaTTGCCGTCGTTTTCAGAATGCCAAAGTCAAAGGAAGTGTTGTCTTCTACTTCAGACAGCGACTCTGACAGTGAAGTTGAGACGAAGGCTAAGAGAAAGAAGCAAGCGGCACCAGAAAAGccatcaaagaaacaaaaaagtggAGAAACCTCAAAAGTGTCATCTGCCTCTAAAAGCAGTAGcagtaaaaatgacaacatgTTCCAGaTAGGAAAGATGAGGTATGTGAGTGTTCGGGATTTCAAGGGAAAAGTGCTGATTGATATCCGGGAGTACTGGATGGACCAAGAAGGTGAAATGAAACCAGGCCGGAAAGGTATTTCACTGAACCCAGAGCAGTGGAACCAGCTCAAAGAGCAGATGGGTGAGATCGACGACGCCGTCAGGAGAATATAACACCTGCCTGCTTTTTTAACAGATTCTTGCTCTGCCGTTCTGCTTCTGTCGCCCTCCAAACCTTCTCTGAATCCTCCCGAGACACGTCACGGTCCACGAGACCTGGCTTCATTTTGACTAATGTGTAATTGCTAAGTTTTTGTCTTTGTAGAGCACCACGCTTTCAAAGCCAATGTGGTTACCGGGACactttgtatgtatattttagacTAGGTTTTATTGAAGTAGTTGTTCGTTGTACgtgtctttttatatttgagaTTTTCATGGTTGTGGGTTTTAAAGGGGTTGGCTAGAGAGAGTGAGTTTGTGCCCTTCGTTTTTAATAAAGATGGTAGACAAAA

Function

symbol description
sub1 Enables identical protein binding activity; single-stranded DNA binding activity; and transcription coactivator activity. Involved in negative regulation of DNA metabolic process and regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. Part of transcription regulator complex.

NR:

description
PREDICTED: activated RNA polymerase II transcriptional coactivator p15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043249978.1 True 884 mRNA 0.45 5 504360 506120

Neighbor

gene id symbol gene type direction distance location
aldh7a1 aldh7a1 coding upstream 83906 412893 ~ 420454 (+)
LOC122353112 LOC107726979,LOC107669787,LOC568883,LOC107568003 coding upstream 267054 227167 ~ 237306 (+)
LOC122353215 NA coding upstream 410156 93311 ~ 94204 (+)
pstpip2 pstpip2,LOC107744171,LOC107685173 coding downstream 1484 507604 ~ 515636 (+)
mtrex skiv2l2,LOC107744101,LOC107571110,LOC107713350,LOC107686493 coding downstream 30288 536408 ~ 564154 (+)
hvcn1 LOC107686438,LOC107744097,LOC107562590,LOC107685148,LOC107575472 coding downstream 107754 613874 ~ 616743 (+)
pptc7b pptc7b,LOC107744096,LOC107713343,LOC107685147,LOC106563180,LOC105909313 coding downstream 117152 623272 ~ 633992 (+)
tbc1d10ab tbc1d10a,LOC105895496,LOC106579927 coding downstream 131550 637670 ~ 649638 (+)
G73560 NA non-coding upstream 75090 428856 ~ 429270 (+)
G73559 apbb1,LOC107750985,LOC107673752,LOC107565841 non-coding upstream 76845 424953 ~ 427515 (+)
G73519 NA non-coding upstream 107259 349033 ~ 397101 (+)
G73523 NA non-coding upstream 156453 347548 ~ 347907 (+)
G73465 NA non-coding upstream 212093 287869 ~ 292267 (+)
G73589 NA non-coding downstream 146424 652544 ~ 653003 (+)
G73588 NA non-coding downstream 147494 653614 ~ 673309 (+)
G73656 NA non-coding downstream 289215 795335 ~ 795689 (+)
G73710 NA non-coding downstream 299250 805370 ~ 805665 (+)
G73711 NA non-coding downstream 301498 807618 ~ 807846 (+)
c10h5orf63 LOC107715565,LOC107657471,LOC107576909 other upstream 105501 396440 ~ 398859 (+)
LOC122352377 fbn2,LOC107705843,LOC107575594,LOC107565844,LOC562634 other upstream 218120 242243 ~ 286240 (+)
pmaip1 NA other downstream 176986 683106 ~ 774374 (+)
isl1b NA other downstream 186004 692124 ~ 695923 (+)
fstb fstb,LOC107685190,LOC107713293,LOC107686430,LOC107744087,LOC107597631,LOC107595577 other downstream 289891 796011 ~ 801923 (+)
rbm18 rbm18,LOC107597621,LOC107595545,LOC107685132,LOC107686423 other downstream 427949 934069 ~ 945860 (+)
LOC122352734 LOC107744074,LOC107597614,LOC107686419,LOC107685127,LOC101884949,LOC107713324,LOC107595548 other downstream 571576 1077696 ~ 1084039 (+)

Expression


Co-expression Network